Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p36050 Brassica napus HOM05D009342 ORTHO05D009997 6.1e-51 203.8 95 100.0
BolC8t51185H Brassica oleracea HOM05D009342 ORTHO05D009997 6.1e-51 203.8 95 100.0
BcaC07g40621 Brassica carinata HOM05D009342 ORTHO05D009997 1.0e-37 159.8 75 97.3
A09p53240 Brassica napus HOM05D009342 ORTHO05D009997 6.5e-37 157.1 75 96.0
Sp5g02203 Schrenkiella parvula HOM05D009342 ORTHO05D009997 6.7e-34 147.1 112 67.0
AT3G61172 Arabidopsis thaliana HOM05D009342 ORTHO05D009997 6.5e-29 130.6 75 74.7
Carub.0005s2783 Capsella rubella HOM05D009342 ORTHO05D009997 2.3e-26 122.1 75 72.0
CARHR286760 Cardamine hirsuta HOM05D009342 ORTHO05D009997 2.2e-24 115.5 72 72.2
Aa31LG10G15250 Aethionema arabicum HOM05D009342 ORTHO05D009997 4.1e-23 111.3 72 68.1
AL5G43410 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 5.7e-17 90.9 55 74.5
AT5G47077 Arabidopsis thaliana HOM05D009342 ORTHO05D012604 1.5e-12 76.3 73 47.9
AT3G61175 Arabidopsis thaliana HOM05D007747 ORTHO05D009997 2.5e-12 75.5 78 55.1
AT3G61177 Arabidopsis thaliana HOM05D007747 ORTHO05D009997 2.5e-12 75.5 77 49.4
Thhalv10006351m.g Eutrema salsugineum HOM05D007747 ORTHO05D009997 3.2e-12 75.1 74 51.4
Carub.0004s1016 Capsella rubella HOM05D009342 ORTHO05D009997 5.5e-12 74.3 79 48.1
AL5G43420 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 7.2e-12 73.9 77 51.9
BcaB07g30795 Brassica carinata HOM05D009342 ORTHO05D012604 9.5e-12 73.6 78 46.2
THA.LOC109116624 Tarenaya hassleriana HOM05D013401 ORTHO05D009997 1.2e-11 73.2 68 41.2
CARHR096880 Cardamine hirsuta HOM05D007747 ORTHO05D009997 2.1e-11 72.4 76 48.7
AL8G11140 Arabidopsis lyrata HOM05D009342 ORTHO05D012604 2.8e-11 72.0 64 48.4
A07p30900 Brassica napus HOM05D007747 ORTHO05D009997 8.0e-11 70.5 74 41.9
BcaC08g45800 Brassica carinata HOM05D007747 ORTHO05D009997 1.0e-10 70.1 74 41.9
C06p35890 Brassica napus HOM05D007747 ORTHO05D009997 1.0e-10 70.1 74 41.9
BraA07t30726Z Brassica rapa HOM05D007747 ORTHO05D009997 1.0e-10 70.1 74 41.9
Carub.0004s1017 Capsella rubella HOM05D009342 ORTHO05D009997 1.4e-10 69.7 74 45.9
AT5G47075 Arabidopsis thaliana HOM05D009342 ORTHO05D012604 1.8e-10 69.3 73 43.8
BcaB03g15568 Brassica carinata HOM05D007747 ORTHO05D009997 1.8e-10 69.3 74 45.9
CARHR101820 Cardamine hirsuta HOM05D007747 ORTHO05D009997 1.8e-10 69.3 76 46.1
Carub.0008s0074 Capsella rubella HOM05D009342 ORTHO05D012604 6.8e-10 67.4 76 44.7
Carub.0230s0002 Capsella rubella HOM05D007747 ORTHO05D009997 6.8e-10 67.4 77 46.8
C02p48340 Brassica napus HOM05D009342 ORTHO05D012604 1.2e-09 66.6 77 41.6
THA.LOC104815826 Tarenaya hassleriana HOM05D013401 ORTHO05D009997 2.6e-09 65.5 80 35.0
AL807U10010 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 3.4e-09 65.1 71 45.1
A02p30830 Brassica napus HOM05D009342 ORTHO05D012604 3.4e-09 65.1 77 40.3
BraA02t08092Z Brassica rapa HOM05D009342 ORTHO05D012604 3.4e-09 65.1 77 40.3
BraA02t08097Z Brassica rapa HOM05D009342 ORTHO05D012604 3.4e-09 65.1 77 40.3
C09p29340 Brassica napus HOM05D009342 ORTHO05D012604 7.5e-09 63.9 64 42.2
AT3G20993 Arabidopsis thaliana HOM05D007747 ORTHO05D009997 9.8e-09 63.5 74 44.6
A02p30770 Brassica napus HOM05D009342 ORTHO05D012604 9.8e-09 63.5 77 39.0
A09p22830 Brassica napus HOM05D009342 ORTHO05D012604 1.3e-08 63.2 64 42.2
BraA09t37885Z Brassica rapa HOM05D009342 ORTHO05D012604 1.3e-08 63.2 64 42.2
Carub.0001s1284 Capsella rubella HOM05D007747 ORTHO05D009997 1.3e-08 63.2 79 50.6
AT3G61182 Arabidopsis thaliana HOM05D007747 ORTHO05D014853 1.7e-08 62.8 79 48.1
CARHR121310 Cardamine hirsuta HOM05D007747 ORTHO05D009997 1.7e-08 62.8 77 42.9
C02p48330 Brassica napus HOM05D009342 ORTHO05D012604 2.8e-08 62.0 75 42.7
BolC2t10865H Brassica oleracea HOM05D009342 ORTHO05D012604 2.8e-08 62.0 75 42.7
Sp5g02207 Schrenkiella parvula HOM05D007747 ORTHO05D009997 2.8e-08 62.0 80 42.5
A09p53230 Brassica napus HOM05D007747 ORTHO05D009997 6.3e-08 60.8 75 46.7
Thhalv10029330m.g Eutrema salsugineum HOM05D007747 ORTHO05D009997 6.3e-08 60.8 77 44.2
AT3G20997 Arabidopsis thaliana HOM05D007747 ORTHO05D009997 1.1e-07 60.1 73 41.1
BcaB06g28203 Brassica carinata HOM05D007747 ORTHO05D024130 1.1e-07 60.1 80 45.0
AL5G43440 Arabidopsis lyrata HOM05D007747 ORTHO05D014853 3.1e-07 58.5 76 46.1
AT5G47175 Arabidopsis thaliana HOM05D009342 ORTHO05D012604 4.1e-07 58.2 79 41.8
A04p01260 Brassica napus HOM05D007747 ORTHO05D028248 4.1e-07 58.2 81 44.4
BraA04t15845Z Brassica rapa HOM05D007747 ORTHO05D028248 4.1e-07 58.2 81 44.4
A02p30760 Brassica napus HOM05D009342 ORTHO05D012604 5.4e-07 57.8 75 40.0
C08p36030 Brassica napus HOM05D007747 ORTHO05D009997 5.4e-07 57.8 75 45.3
BraA02t08091Z Brassica rapa HOM05D009342 ORTHO05D012604 5.4e-07 57.8 75 40.0
AL5G21440 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 9.2e-07 57.0 76 44.7
BcaC07g40620 Brassica carinata HOM05D007747 ORTHO05D009997 1.6e-06 56.2 75 44.0
Carub.0005s2785 Capsella rubella HOM05D007747 ORTHO05D014853 2.0e-06 55.8 74 41.9
AL5G21430 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 2.7e-06 55.5 75 42.7
BcaC08g45110 Brassica carinata HOM05D007747 ORTHO05D009997 4.5e-06 54.7 77 41.6
C06p27200 Brassica napus HOM05D007747 ORTHO05D009997 4.5e-06 54.7 77 41.6


User provided reference genes

Program Settings