Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 2.2e-120 435.6 216 100.0
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 8.2e-120 433.7 216 99.5
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 1.2e-118 429.9 216 98.1
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 5.0e-117 424.5 216 96.8
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 2.4e-111 405.6 216 93.5
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 3.4e-110 401.7 217 92.6
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 2.7e-107 392.1 216 90.3
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 1.5e-105 386.3 216 89.8
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 1.3e-104 383.3 216 88.4
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 2.8e-104 382.1 218 88.5
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 1.3e-101 373.2 214 87.4
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 4.8e-96 354.8 219 84.5
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 8.2e-96 354.0 216 81.5
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 2.2e-88 329.3 219 75.8
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 1.3e-77 293.5 223 71.3
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 5.0e-77 291.6 219 70.3
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 6.6e-77 291.2 220 70.0
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 6.6e-77 291.2 227 68.3
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 8.6e-77 290.8 219 70.3
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 2.5e-76 289.3 222 68.9
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 3.3e-76 288.9 220 68.6
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 7.3e-76 287.7 224 67.9
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 1.6e-75 286.6 219 69.9
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 2.1e-75 286.2 229 68.6
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 6.1e-75 284.6 220 67.7
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 6.1e-75 284.6 225 68.4
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 8.0e-75 284.3 223 67.7
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 3.0e-74 282.3 193 74.1
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 4.0e-74 282.0 229 66.4
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 5.2e-74 281.6 186 75.8
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 8.9e-74 280.8 193 73.6
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 1.5e-73 280.0 221 67.4
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 2.0e-73 279.6 219 67.1
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 2.6e-73 279.3 223 67.7
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 5.7e-73 278.1 193 71.0
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 7.5e-73 277.7 218 68.3
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 7.5e-73 277.7 184 75.5
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 2.9e-72 275.8 222 65.8
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 4.9e-72 275.0 218 65.6
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 6.4e-72 274.6 228 63.6
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 1.1e-71 273.9 220 65.5
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 1.4e-71 273.5 226 65.9
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 1.8e-71 273.1 223 67.7
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 2.4e-71 272.7 224 63.8
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 3.2e-71 272.3 195 70.8
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 3.2e-71 272.3 221 64.7
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 3.5e-70 268.9 223 65.0
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 7.8e-70 267.7 224 63.4
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 7.8e-70 267.7 228 62.7
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 7.8e-70 267.7 173 76.9
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 1.0e-69 267.3 228 62.7
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 1.3e-69 266.9 222 64.4
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 1.7e-69 266.5 223 64.1
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 1.7e-69 266.5 224 64.7
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 3.0e-69 265.8 186 70.4
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 5.0e-69 265.0 178 75.3
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 6.6e-69 264.6 201 67.2
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 8.6e-69 264.2 218 64.2
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 8.6e-69 264.2 230 64.8
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 1.1e-68 263.8 186 70.4
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 1.9e-68 263.1 208 67.8
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 3.3e-68 262.3 181 73.5
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 4.3e-68 261.9 222 63.5
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 7.3e-68 261.2 227 62.6
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 1.2e-67 260.4 204 67.6
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 2.8e-67 259.2 179 70.4
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 2.8e-67 259.2 202 64.9
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 4.7e-67 258.5 176 73.3
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 4.7e-67 258.5 176 73.3
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 8.0e-67 257.7 174 74.1
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 1.4e-66 256.9 187 70.6
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 1.4e-66 256.9 190 70.0
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 1.8e-66 256.5 178 73.6
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 8.9e-66 254.2 184 70.1
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 1.5e-65 253.4 168 75.6
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 1.5e-65 253.4 234 59.4
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 1.5e-65 253.4 204 65.2
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 2.6e-65 252.7 177 72.9
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 5.8e-65 251.5 173 72.3
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 7.5e-65 251.1 152 80.3
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 2.9e-64 249.2 207 65.2
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 9.2e-63 244.2 165 75.8
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 9.2e-63 244.2 165 75.8
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.2e-62 243.8 151 79.5
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 6.6e-61 238.0 179 64.8
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 5.6e-60 235.0 203 63.1
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 9.5e-60 234.2 173 67.1
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 1.6e-59 233.4 177 64.4
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 2.1e-59 233.0 196 62.2
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 1.1e-58 230.7 155 74.8
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 6.8e-58 228.0 174 66.7
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 6.8e-58 228.0 152 77.6
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 2.6e-57 226.1 151 72.8
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 9.8e-57 224.2 153 72.5
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 8.3e-56 221.1 181 66.9
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 1.2e-54 217.2 173 63.6
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 2.3e-53 213.0 169 63.9
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 2.3e-53 213.0 172 60.5
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 9.5e-52 207.6 182 62.1
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 8.9e-50 201.1 151 65.6
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 1.3e-48 197.2 188 56.9
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 3.8e-48 195.7 167 61.7
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 6.4e-48 194.9 174 61.5
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 1.9e-47 193.4 180 59.4
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 1.2e-46 190.7 210 53.3
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 2.3e-45 186.4 220 50.5
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 2.8e-43 179.5 174 51.7
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 1.9e-39 166.8 105 78.1
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 5.4e-39 165.2 231 45.9
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 4.6e-38 162.2 110 74.5
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 5.1e-37 158.7 165 53.3
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 8.1e-35 151.4 108 69.4
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.1e-34 151.0 95 80.0
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 2.4e-34 149.8 135 60.0
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 1.2e-33 147.5 124 63.7
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 7.1e-31 138.3 137 55.5
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 2.5e-28 129.8 95 67.4
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 5.6e-28 128.6 76 81.6
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 2.1e-27 126.7 159 43.4
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 2.8e-27 126.3 96 62.5
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 1.5e-25 120.6 83 69.9
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 9.9e-25 117.9 112 57.1
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 1.3e-24 117.5 142 48.6
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 4.2e-23 112.5 92 68.5
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 6.0e-22 108.6 92 66.3
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 2.0e-17 93.6 80 60.0
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 3.4e-17 92.8 79 60.8
Gorai.004G161600 Gossypium raimondii HOM05D006036 ORTHO05D007736 1.6e-14 84.0 72 65.3
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 7.9e-14 81.6 53 73.6
arahy.Tifrunner.gnm1.ann1.WD24C8 Arachis hypogaea HOM05D006036 ORTHO05D007736 2.5e-12 76.6 71 53.5
Mapoly0030s0012 Marchantia polymorpha HOM05D020894 ORTHO05D021334 2.6e-09 66.6 136 33.8
arahy.Tifrunner.gnm1.ann1.BW32E7 Arachis hypogaea HOM05D006036 ORTHO05D000587 7.6e-09 65.1 58 55.2


User provided reference genes

Program Settings