Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p35540 Brassica napus HOM05D006574 ORTHO05D008210 1.9e-173 612.5 318 100.0
BolC8t51146H Brassica oleracea HOM05D006574 ORTHO05D008210 4.4e-170 601.3 318 98.7
BraA09t40713Z Brassica rapa HOM05D006574 ORTHO05D008210 1.2e-159 566.6 320 94.4
A09p52810 Brassica napus HOM05D006574 ORTHO05D008210 1.6e-156 556.2 320 92.8
Sp5g02640 Schrenkiella parvula HOM05D006574 ORTHO05D008210 1.2e-146 523.5 324 84.3
Thhalv10006432m.g Eutrema salsugineum HOM05D006574 ORTHO05D008210 6.3e-145 517.7 328 83.2
BcaC02g10162 Brassica carinata HOM05D006574 ORTHO05D008210 4.1e-144 515.0 316 84.5
C04p32070 Brassica napus HOM05D006574 ORTHO05D008210 4.1e-144 515.0 316 84.5
BolC4t24760H Brassica oleracea HOM05D006574 ORTHO05D008210 4.1e-144 515.0 316 84.5
BcaB02g08163 Brassica carinata HOM05D006574 ORTHO05D008210 1.0e-142 510.4 323 83.9
BraA04t15877Z Brassica rapa HOM05D006574 ORTHO05D008210 1.0e-142 510.4 316 84.2
A04p01560 Brassica napus HOM05D006574 ORTHO05D008210 1.5e-141 506.5 317 83.9
Carub.0005s2733 Capsella rubella HOM05D006574 ORTHO05D008210 4.4e-138 495.0 332 78.9
AT3G60590 Arabidopsis thaliana HOM05D006574 ORTHO05D008210 9.8e-138 493.8 330 79.4
CARHR171000 Cardamine hirsuta HOM05D006574 ORTHO05D008210 1.6e-132 476.5 325 77.5
Aa31LG10G14870 Aethionema arabicum HOM05D006574 ORTHO05D008210 2.8e-124 449.1 328 74.1
THA.LOC104817218 Tarenaya hassleriana HOM05D006574 ORTHO05D008210 4.7e-116 421.8 344 67.2
Cpa.g.sc129.21 Carica papaya HOM05D006574 ORTHO05D008210 8.1e-100 367.9 328 60.4
QL04p038697 Quercus lobata HOM05D006574 ORTHO05D008210 6.9e-99 364.8 322 59.3
Sabra14G0044800 Salix brachista HOM05D006574 ORTHO05D008210 1.2e-98 364.0 335 57.6
MD07G1115500 Malus domestica HOM05D006574 ORTHO05D008210 1.2e-95 354.0 285 61.4
Potri.014G061000 Populus trichocarpa HOM05D006574 ORTHO05D008210 1.2e-95 354.0 283 62.9
Cfa011166 Carpinus fangiana HOM05D006574 ORTHO05D008210 2.7e-95 352.8 289 61.6
Thecc.01G382800 Theobroma cacao HOM05D006574 ORTHO05D008210 7.9e-95 351.3 335 57.0
Prupe.2G138000 Prunus persica HOM05D006574 ORTHO05D008210 1.3e-94 350.5 285 61.1
CANSAT56G0701 Cannabis sativa HOM05D006574 ORTHO05D008210 2.3e-94 349.7 323 58.5
CANSAT56G2026 Cannabis sativa HOM05D006574 ORTHO05D008210 3.0e-94 349.4 323 58.5
TPR.G4993 Trifolium pratense HOM05D006574 ORTHO05D008210 3.0e-94 349.4 288 59.4
Ciclev10021078m.g Citrus clementina HOM05D006574 ORTHO05D008210 6.7e-94 348.2 314 56.1
Lj3g0024356 Lotus japonicus HOM05D006574 ORTHO05D008210 6.7e-94 348.2 289 60.2
Glyma.03G032200 Glycine max HOM05D006574 ORTHO05D008210 8.7e-94 347.8 296 59.8
CSS0016139 Camellia sinensis var. sinensis HOM05D006574 ORTHO05D008210 1.9e-93 346.7 323 55.4
CSS0019673 Camellia sinensis var. sinensis HOM05D006574 ORTHO05D008210 1.9e-93 346.7 323 55.4
Manes.05G049100 Manihot esculenta HOM05D006574 ORTHO05D008210 1.9e-93 346.7 289 59.2
Ca_19840_v3 Cicer arietinum L. HOM05D006574 ORTHO05D008210 3.3e-93 345.9 281 60.5
ClCG00G005790 Citrullus lanatus HOM05D006574 ORTHO05D008210 5.6e-93 345.1 325 56.3
Sed0000081 Sechium edule HOM05D006574 ORTHO05D008210 7.4e-93 344.7 329 54.4
Dinv43672 Davidia involucrata HOM05D006574 ORTHO05D008210 9.6e-93 344.4 331 55.0
Medtr4g027070 Medicago truncatula HOM05D006574 ORTHO05D008210 1.6e-92 343.6 289 58.5
CiPaw.13G032400 Carya illinoinensis HOM05D006574 ORTHO05D008210 2.1e-92 343.2 290 61.0
Hma1.2p1_0386F.1_g141830 Hydrangea macrophylla HOM05D006574 ORTHO05D008210 2.1e-92 343.2 334 56.0
GSVIVG01027684001 Vitis vinifera HOM05D006574 ORTHO05D008210 4.8e-92 342.0 325 54.8
Glyma.01G135900 Glycine max HOM05D006574 ORTHO05D008210 8.1e-92 341.3 296 56.4
FAN03G3328 Fragaria x ananassa HOM05D006574 ORTHO05D008210 1.4e-91 340.5 335 54.6
RcHm_v2.0_Chr1g0349101 Rosa chinensis HOM05D006574 ORTHO05D008210 2.4e-91 339.7 318 57.9
FAN01G0938 Fragaria x ananassa HOM05D006574 ORTHO05D008210 3.1e-91 339.3 337 54.6
Lalb_Chr12g0207901 Lupinus albus HOM05D006574 ORTHO05D008210 3.1e-91 339.3 287 58.5
arahy.Tifrunner.gnm1.ann1.KNQ922 Arachis hypogaea HOM05D006574 ORTHO05D008210 5.3e-91 338.6 295 57.6
Duzib138G0195 Durio zibethinus HOM05D006574 ORTHO05D008210 5.3e-91 338.6 335 54.0
CsaV3_5G004680 Cucumis sativus L. HOM05D006574 ORTHO05D008210 2.0e-90 336.7 331 54.7
Lalb_Chr07g0190251 Lupinus albus HOM05D006574 ORTHO05D008210 2.0e-90 336.7 283 58.0
MELO3C005473.2 Cucumis melo HOM05D006574 ORTHO05D008210 2.6e-90 336.3 331 53.8
FAN10G1171 Fragaria x ananassa HOM05D006574 ORTHO05D008210 2.6e-90 336.3 335 53.7
Psat7g236040 Pisum sativum HOM05D006574 ORTHO05D008210 4.5e-90 335.5 328 52.1
FAN10G3734 Fragaria x ananassa HOM05D006574 ORTHO05D008210 9.9e-90 334.3 333 54.4
Gohir.A11G078700 Gossypium hirsutum HOM05D006574 ORTHO05D008210 9.9e-90 334.3 336 55.1
VMungo0331G0612 Vigna mungo HOM05D006574 ORTHO05D008210 9.9e-90 334.3 288 56.9
Gohir.D11G083300 Gossypium hirsutum HOM05D006574 ORTHO05D008210 2.9e-89 332.8 329 55.9
Gorai.007G088900 Gossypium raimondii HOM05D006574 ORTHO05D008210 1.4e-88 330.5 329 55.6
Phvul.010G072300 Phaseolus vulgaris HOM05D006574 ORTHO05D008210 1.4e-88 330.5 276 59.1
COL.COLO4_12488 Corchorus olitorius HOM05D006574 ORTHO05D008210 1.9e-88 330.1 339 54.3
EL10Ac1g00838 Beta vulgaris HOM05D006574 ORTHO05D008210 2.4e-88 329.7 278 59.4
TWI59G0788 Tripterygium wilfordii HOM05D006574 ORTHO05D008210 2.4e-88 329.7 323 55.4
AUR62004165 Chenopodium quinoa HOM05D006574 ORTHO05D008210 9.3e-88 327.8 309 55.0
Aqoxy5G03888 Aquilegia oxysepala HOM05D006574 ORTHO05D008210 1.6e-87 327.0 279 59.9
TAR374G0842 Trochodendron aralioides HOM05D006574 ORTHO05D008210 2.1e-87 326.6 279 58.1
FAN06G3094 Fragaria x ananassa HOM05D006574 ORTHO05D008210 4.6e-87 325.5 347 51.6
AUR62013662 Chenopodium quinoa HOM05D006574 ORTHO05D008210 1.0e-86 324.3 309 54.4
FAN06G2171 Fragaria x ananassa HOM05D006574 ORTHO05D008210 3.0e-86 322.8 347 51.0
CAN.G1872.8 Capsicum annuum HOM05D006574 ORTHO05D008210 6.7e-86 321.6 303 55.4
FvH4_7g11080 Fragaria vesca HOM05D006574 ORTHO05D008210 8.7e-86 321.2 347 51.0
DCAR_015883 Daucus carota HOM05D006574 ORTHO05D008210 2.5e-85 319.7 316 53.2
Peaxi162Scf00803g00013 Petunia axillaris HOM05D006574 ORTHO05D008210 7.4e-85 318.2 295 54.6
Sopen01g036640 Solanum pennellii HOM05D006574 ORTHO05D008210 2.8e-84 316.2 328 51.8
Rhsim07G0031300 Rhododendron simsii HOM05D006574 ORTHO05D008210 4.8e-84 315.5 286 56.6
Ah.05g173830 Amaranthus hybridus HOM05D006574 ORTHO05D008210 8.2e-84 314.7 312 53.2
Solyc01g090900.3 Solanum lycopersicum HOM05D006574 ORTHO05D008210 8.2e-84 314.7 323 52.9
PGSC0003DMG400026016 Solanum tuberosum HOM05D006574 ORTHO05D008210 1.1e-83 314.3 328 52.4
Nitab4.5_0000859g0210 Nicotiana tabacum HOM05D006574 ORTHO05D008210 1.4e-83 313.9 281 56.2
PSO063G4205 Papaver somniferum HOM05D006574 ORTHO05D008210 1.4e-83 313.9 301 54.5
PGR004G2311 Punica granatum HOM05D006574 ORTHO05D008210 1.4e-83 313.9 319 54.2
vmacro13444 Vaccinium macrocarpon HOM05D006574 ORTHO05D008210 1.4e-83 313.9 286 54.9
vmacro22438 Vaccinium macrocarpon HOM05D006574 ORTHO05D008210 1.4e-83 313.9 286 54.9
Nitab4.5_0008963g0020 Nicotiana tabacum HOM05D006574 ORTHO05D008210 2.4e-83 313.2 306 53.3
PSO782G0696 Papaver somniferum HOM05D006574 ORTHO05D008210 3.1e-83 312.8 301 54.5
Lj7P535T34 Lonicera japonica HOM05D006574 ORTHO05D008210 5.3e-83 312.0 282 57.8
Oeu000020.1 Olea europaea HOM05D006574 ORTHO05D008210 4.5e-82 308.9 333 51.4
Eucgr.D02492 Eucalyptus grandis HOM05D006574 ORTHO05D008210 1.0e-81 307.8 278 58.3
Cc02_g24430 Coffea canephora HOM05D006574 ORTHO05D008210 1.3e-81 307.4 301 53.2
Gorai.004G163900 Gossypium raimondii HOM05D006574 ORTHO05D008210 1.1e-80 304.3 341 51.0
HanXRQChr03g0093261 Helianthus annuus HOM05D006574 ORTHO05D008210 1.4e-80 303.9 272 54.8
ECA240G1589 Erigeron canadensis HOM05D006574 ORTHO05D008210 4.2e-80 302.4 285 52.6
Nn6g33974 Nelumbo nucifera HOM05D006574 ORTHO05D008210 4.2e-80 302.4 267 57.3
MSTRG.4912 Avicennia marina HOM05D006574 ORTHO05D008210 2.5e-77 293.1 297 53.2
HanXRQChr13g0423061 Helianthus annuus HOM05D006574 ORTHO05D008210 6.9e-75 285.0 322 49.1
Gohir.D08G157700 Gossypium hirsutum HOM05D006574 ORTHO05D008210 7.7e-74 281.6 324 49.4
Migut.L01604 Erythranthe guttata HOM05D006574 ORTHO05D008210 6.5e-73 278.5 287 53.7
Lsat_1_v5_gn_3_129181 Lactuca sativa HOM05D006574 ORTHO05D008210 7.2e-72 275.0 316 45.6
Migut.N01615 Erythranthe guttata HOM05D006574 ORTHO05D008210 1.2e-71 274.2 213 63.8
Gohir.A08G136900 Gossypium hirsutum HOM05D006574 ORTHO05D008210 1.4e-70 270.8 219 61.6
Actinidia22763 Actinidia chinensis HOM05D006574 ORTHO05D008210 5.1e-70 268.9 274 51.8
Os04g0534500 Oryza sativa ssp. japonica HOM05D006574 ORTHO05D008210 5.1e-70 268.9 284 51.8
ATR0317G043 Amborella trichopoda HOM05D006574 ORTHO05D008210 8.8e-70 268.1 272 51.1
unitig_8.g3385 Utricularia gibba HOM05D006574 ORTHO05D008210 2.0e-69 266.9 273 51.6
Sc02g0002790 Simmondsia chinensis HOM05D006574 ORTHO05D008210 1.7e-68 263.8 193 66.3
HanXRQChr13g0422971 Helianthus annuus HOM05D006574 ORTHO05D008210 8.5e-65 251.5 301 46.5
HPP92_027018 Vanilla planifolia HOM05D006574 ORTHO05D008210 7.4e-61 238.4 200 60.5
SGA_v2.0_scaffold43G16514 Striga asiatica HOM05D006574 ORTHO05D008210 2.2e-60 236.9 194 61.9
CDE12G0059 Ceratophyllum demersum HOM05D006574 ORTHO05D008210 1.1e-59 234.6 207 56.0
SEGI_22327 Sequoiadendron giganteum HOM05D006574 ORTHO05D008210 8.0e-55 218.4 214 52.3
AagrBONN_evm.TU.Sc2ySwM_117.2636 Anthoceros agrestis HOM05D006574 ORTHO05D008210 3.2e-48 196.4 220 46.4
TAR374G1600 Trochodendron aralioides HOM05D006574 ORTHO05D008210 1.2e-42 177.9 162 55.6
Mapoly0010s0201 Marchantia polymorpha HOM05D006574 ORTHO05D008210 2.7e-39 166.8 210 45.2
Actinidia22819 Actinidia chinensis HOM05D006574 ORTHO05D008210 8.0e-39 165.2 150 52.0
HanXRQChr13g0422981 Helianthus annuus HOM05D006574 ORTHO05D008210 6.6e-33 145.6 206 44.7
HPP92_027026 Vanilla planifolia HOM05D006574 ORTHO05D008210 4.9e-20 102.8 80 62.5
Zm00001eb427440 Zea mays HOM05D006574 ORTHO05D008210 6.0e-18 95.9 133 43.6
vmacro22439 Vaccinium macrocarpon HOM05D006574 ORTHO05D008210 4.7e-15 86.3 60 66.7
Atru.chr5.248 Acer truncatum HOM05D006574 ORTHO05D008210 1.4e-14 84.7 60 65.0
TAR374G0556 Trochodendron aralioides HOM05D006574 ORTHO05D008210 9.2e-11 72.0 90 38.9
AagrBONN_evm.TU.Sc2ySwM_344.2339 Anthoceros agrestis HOM05D025526 ORTHO05D023512 1.2e-10 71.6 207 28.0
CAN.G22.19 Capsicum annuum HOM05D003072 ORTHO05D008464 1.3e-09 68.2 192 28.1
PGSC0003DMG400005293 Solanum tuberosum HOM05D003072 ORTHO05D008464 1.3e-09 68.2 192 27.6
Lsat_1_v5_gn_1_28241 Lactuca sativa HOM05D003072 ORTHO05D008464 1.7e-09 67.8 199 29.6
SalBow5G5496 Salvia bowleyana HOM05D003072 ORTHO05D008464 3.0e-09 67.0 170 31.2
AagrBONN_evm.TU.Sc2ySwM_228.2830 Anthoceros agrestis HOM05D025526 ORTHO05D023512 3.9e-09 66.6 206 28.2
Cc04_g12330 Coffea canephora HOM05D003072 ORTHO05D008464 3.9e-09 66.6 170 30.6
Hma1.2p1_0386F.1_g141840 Hydrangea macrophylla HOM05D006574 ORTHO05D008210 5.1e-09 66.2 135 37.0
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 6.6e-09 65.9 191 28.8
ECA247G2325 Erigeron canadensis HOM05D003072 ORTHO05D008464 8.6e-09 65.5 190 29.5
SGA_v2.0_scaffold25G10826 Striga asiatica HOM05D003072 ORTHO05D008464 8.6e-09 65.5 187 31.0
Prupe.5G170600 Prunus persica HOM05D003072 ORTHO05D008464 1.1e-08 65.1 171 31.0
Nitab4.5_0000025g0470 Nicotiana tabacum HOM05D003072 ORTHO05D008464 1.5e-08 64.7 176 27.8
Nitab4.5_0014195g0010 Nicotiana tabacum HOM05D003072 ORTHO05D008464 1.5e-08 64.7 176 27.8
COL.COLO4_30098 Corchorus olitorius HOM05D003072 ORTHO05D008464 3.3e-08 63.5 170 30.0
Potri.012G088700 Populus trichocarpa HOM05D003072 ORTHO05D008464 3.3e-08 63.5 189 29.6
Thecc.03G018600 Theobroma cacao HOM05D003072 ORTHO05D008464 4.3e-08 63.2 186 29.0
CANSAT80G0622 Cannabis sativa HOM05D003072 ORTHO05D008464 5.6e-08 62.8 171 28.7
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 5.6e-08 62.8 172 29.1
TAR371G0662 Trochodendron aralioides HOM05D003072 ORTHO05D008464 7.3e-08 62.4 171 29.8
GSVIVG01007705001 Vitis vinifera HOM05D003072 ORTHO05D008464 7.3e-08 62.4 173 30.6
Sabra12G0063900 Salix brachista HOM05D003072 ORTHO05D008464 1.2e-07 61.6 173 29.5
Cfa019166 Carpinus fangiana HOM05D003072 ORTHO05D008464 2.8e-07 60.5 197 27.9
HanXRQChr02g0035971 Helianthus annuus HOM05D003072 ORTHO05D008464 2.8e-07 60.5 190 28.4
Pp3c21_4590 Physcomitrium patens HOM05D003072 ORTHO05D008464 2.8e-07 60.5 177 29.4
ATR1152G060 Amborella trichopoda HOM05D003072 ORTHO05D008464 3.6e-07 60.1 172 30.2
Aqoxy3G02847 Aquilegia oxysepala HOM05D003072 ORTHO05D008464 3.6e-07 60.1 173 28.9
MD06G1171000 Malus domestica HOM05D003072 ORTHO05D008464 3.6e-07 60.1 171 28.7
Mapoly0088s0089 Marchantia polymorpha HOM05D025526 ORTHO05D023512 3.6e-07 60.1 267 25.8
Lalb_Chr23g0273311 Lupinus albus HOM05D003072 ORTHO05D008464 6.2e-07 59.3 232 27.6
TWI23G0250 Tripterygium wilfordii HOM05D003072 ORTHO05D008464 6.2e-07 59.3 191 28.3
QL10p010881 Quercus lobata HOM05D003072 ORTHO05D008464 8.1e-07 58.9 173 28.3
vmacro16626 Vaccinium macrocarpon HOM05D003072 ORTHO05D008464 8.1e-07 58.9 170 28.8
Actinidia19109 Actinidia chinensis HOM05D003072 ORTHO05D008464 1.1e-06 58.5 171 28.1
ClCG06G017110 Citrullus lanatus HOM05D003072 ORTHO05D008464 1.1e-06 58.5 202 28.2
Gohir.A09G172700 Gossypium hirsutum HOM05D003072 ORTHO05D008464 1.1e-06 58.5 187 28.3
Duzib068G0599 Durio zibethinus HOM05D003072 ORTHO05D008464 1.4e-06 58.2 170 28.8
Migut.O00122 Erythranthe guttata HOM05D003072 ORTHO05D008464 1.4e-06 58.2 193 28.5
Atru.chr9.2517 Acer truncatum HOM05D003072 ORTHO05D008464 2.3e-06 57.4 191 28.3
AagrBONN_evm.TU.Sc2ySwM_344.2078 Anthoceros agrestis HOM05D003072 ORTHO05D008464 2.3e-06 57.4 179 30.2
Ciclev10020708m.g Citrus clementina HOM05D003072 ORTHO05D008464 2.3e-06 57.4 173 29.5
Eucgr.K02823 Eucalyptus grandis HOM05D003072 ORTHO05D008464 2.3e-06 57.4 171 31.0
Gohir.D09G168400 Gossypium hirsutum HOM05D003072 ORTHO05D008464 2.3e-06 57.4 187 28.3
Gorai.006G190000 Gossypium raimondii HOM05D003072 ORTHO05D008464 2.3e-06 57.4 187 28.3
MD14G1176700 Malus domestica HOM05D003072 ORTHO05D008464 2.3e-06 57.4 171 28.7
Manes.06G107000 Manihot esculenta HOM05D003072 ORTHO05D008464 2.3e-06 57.4 172 29.1
Sed0027860 Sechium edule HOM05D003072 ORTHO05D008464 2.3e-06 57.4 173 28.9
FAN04G2540 Fragaria x ananassa HOM05D003072 ORTHO05D008464 5.2e-06 56.2 171 26.9
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 5.2e-06 56.2 171 26.9
FAN18G3341 Fragaria x ananassa HOM05D003072 ORTHO05D008464 5.2e-06 56.2 171 26.9
Rhsim12G0166200 Rhododendron simsii HOM05D003072 ORTHO05D008464 5.2e-06 56.2 196 27.0
RcHm_v2.0_Chr7g0193191 Rosa chinensis HOM05D003072 ORTHO05D008464 6.8e-06 55.8 171 26.9
CDE06G1157 Ceratophyllum demersum HOM05D003072 ORTHO05D008464 8.9e-06 55.5 172 30.8


User provided reference genes

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