Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p35470 Brassica napus HOM05D006948 ORTHO05D008703 8.9e-69 263.5 132 100.0
BcaC07g40567 Brassica carinata HOM05D006948 ORTHO05D008703 6.2e-54 214.2 110 96.4
A09p52730 Brassica napus HOM05D006948 ORTHO05D008703 1.6e-49 199.5 139 77.7
BcaC07g40569 Brassica carinata HOM05D006948 ORTHO05D008703 7.9e-49 197.2 110 90.9
Sp5g02740 Schrenkiella parvula HOM05D006948 ORTHO05D008703 6.7e-48 194.1 123 79.7
Carub.0005s2721 Capsella rubella HOM05D006948 ORTHO05D008703 3.2e-42 175.3 112 76.8
AL5G42750 Arabidopsis lyrata HOM05D006948 ORTHO05D008703 9.3e-42 173.7 110 77.3
CARHR170860 Cardamine hirsuta HOM05D006948 ORTHO05D008703 9.3e-42 173.7 112 75.9
AT3G60480 Arabidopsis thaliana HOM05D006948 ORTHO05D008703 4.6e-41 171.4 110 75.5
BolC8t51138H Brassica oleracea HOM05D006948 ORTHO05D008703 1.1e-39 166.8 114 79.8
Aa31LG10G14620 Aethionema arabicum HOM05D006948 ORTHO05D008703 3.7e-38 161.8 111 69.4
BcaC07g42775 Brassica carinata HOM05D006948 ORTHO05D008703 5.3e-37 157.9 82 96.3
Ciclev10023020m.g Citrus clementina HOM05D006948 ORTHO05D008703 4.4e-23 111.7 84 59.5
THA.LOC104817199 Tarenaya hassleriana HOM05D006948 ORTHO05D008703 2.2e-22 109.4 78 69.2
CiPaw.13G028600 Carya illinoinensis HOM05D006948 ORTHO05D008703 3.7e-22 108.6 84 59.5
Gohir.A08G029800 Gossypium hirsutum HOM05D006948 ORTHO05D008703 8.2e-22 107.5 95 53.7
Gorai.004G039500 Gossypium raimondii HOM05D006948 ORTHO05D008703 8.2e-22 107.5 95 54.7
Duzib138G1111 Durio zibethinus HOM05D006948 ORTHO05D008703 1.4e-21 106.7 97 55.7
COL.COLO4_12436 Corchorus olitorius HOM05D006948 ORTHO05D008703 2.4e-21 105.9 99 53.5
Gohir.D08G040600 Gossypium hirsutum HOM05D006948 ORTHO05D008703 4.1e-21 105.1 95 53.7
Nitab4.5_0001818g0020 Nicotiana tabacum HOM05D006948 ORTHO05D008703 5.3e-21 104.8 99 55.6
AUR62023432 Chenopodium quinoa HOM05D006948 ORTHO05D008703 9.1e-21 104.0 104 48.1
Peaxi162Scf00392g00125 Petunia axillaris HOM05D006948 ORTHO05D008703 9.1e-21 104.0 86 60.5
Thecc.01G389700 Theobroma cacao HOM05D006948 ORTHO05D008703 9.1e-21 104.0 95 53.7
Thecc.01G390200 Theobroma cacao HOM05D006948 ORTHO05D008703 1.5e-20 103.2 95 53.7
TWI59G0066 Tripterygium wilfordii HOM05D006948 ORTHO05D008703 2.0e-20 102.8 84 56.0
Cc00_g20460 Coffea canephora HOM05D006948 ORTHO05D008703 3.4e-20 102.1 107 47.7
CsaV3_3G007550 Cucumis sativus L. HOM05D006948 ORTHO05D008703 4.5e-20 101.7 100 48.0
Atru.chr4.2323 Acer truncatum HOM05D006948 ORTHO05D008703 1.0e-19 100.5 78 60.3
Manes.05G052600 Manihot esculenta HOM05D006948 ORTHO05D008703 1.0e-19 100.5 78 59.0
EL10Ac1g00789 Beta vulgaris HOM05D006948 ORTHO05D008703 1.3e-19 100.1 110 47.3
Cfa012992 Carpinus fangiana HOM05D006948 ORTHO05D008703 1.3e-19 100.1 81 56.8
Sabra14G0040200 Salix brachista HOM05D006948 ORTHO05D008703 3.8e-19 98.6 77 61.0
Cpa.g.sc5.223 Carica papaya HOM05D006948 ORTHO05D008703 1.1e-18 97.1 88 46.6
PGR042G1623 Punica granatum HOM05D006948 ORTHO05D008703 1.1e-18 97.1 81 58.0
Potri.014G054300 Populus trichocarpa HOM05D006948 ORTHO05D008703 1.9e-18 96.3 77 58.4
Hund17076 Selenicereus undatus HOM05D006948 ORTHO05D008703 1.9e-18 96.3 81 58.0
AUR62018049 Chenopodium quinoa HOM05D006948 ORTHO05D008703 2.5e-18 95.9 94 48.9
HanXRQChr06g0168761 Helianthus annuus HOM05D006948 ORTHO05D008703 4.2e-18 95.1 70 62.9
Lsat_1_v5_gn_7_10441 Lactuca sativa HOM05D006948 ORTHO05D008703 4.2e-18 95.1 70 61.4
Sopen01g036290 Solanum pennellii HOM05D006948 ORTHO05D008703 7.2e-18 94.4 88 52.3
ECA236G1236 Erigeron canadensis HOM05D006948 ORTHO05D008703 9.4e-18 94.0 70 58.6
Solyc01g090500.4 Solanum lycopersicum HOM05D006948 ORTHO05D008703 1.6e-17 93.2 98 48.0
Prupe.2G124300 Prunus persica HOM05D006948 ORTHO05D008703 2.7e-17 92.4 107 47.7
CANSAT21G1424 Cannabis sativa HOM05D006948 ORTHO05D008703 3.6e-17 92.0 95 46.3
Eucgr.E01580 Eucalyptus grandis HOM05D006948 ORTHO05D008703 3.6e-17 92.0 80 57.5
arahy.Tifrunner.gnm1.ann1.96FU63 Arachis hypogaea HOM05D006948 ORTHO05D008703 4.7e-17 91.7 85 48.2
arahy.Tifrunner.gnm1.ann1.9NP6XU Arachis hypogaea HOM05D006948 ORTHO05D008703 4.7e-17 91.7 85 48.2
Medtr7g446140 Medicago truncatula HOM05D006948 ORTHO05D008703 1.4e-16 90.1 83 51.8
MD00G1058900 Malus domestica HOM05D006948 ORTHO05D008703 2.3e-16 89.4 100 46.0
PSO732G0264 Papaver somniferum HOM05D006948 ORTHO05D008703 2.3e-16 89.4 107 42.1
Lalb_Chr19g0126621 Lupinus albus HOM05D006948 ORTHO05D008703 3.0e-16 89.0 90 42.2
Nitab4.5_0002874g0090 Nicotiana tabacum HOM05D006948 ORTHO05D008703 3.0e-16 89.0 106 47.2
MSTRG.28159 Avicennia marina HOM05D006948 ORTHO05D008703 3.9e-16 88.6 95 47.4
Dinv43640 Davidia involucrata HOM05D006948 ORTHO05D008703 3.9e-16 88.6 94 51.1
Hma1.2p1_1740F.1_g300040 Hydrangea macrophylla HOM05D006948 ORTHO05D008703 5.2e-16 88.2 75 60.0
Rhsim01G0137500 Rhododendron simsii HOM05D006948 ORTHO05D008703 5.2e-16 88.2 77 55.8
TPR.G39099 Trifolium pratense HOM05D006948 ORTHO05D008703 8.8e-16 87.4 109 45.0
SGA_v2.0_scaffold43G16525 Striga asiatica HOM05D006948 ORTHO05D008703 1.1e-15 87.0 92 46.7
Glyma.01G074400 Glycine max HOM05D006948 ORTHO05D008703 1.5e-15 86.7 98 44.9
CSS0003978 Camellia sinensis var. sinensis HOM05D006948 ORTHO05D008703 3.3e-15 85.5 77 53.2
VMungo1383G1377 Vigna mungo HOM05D006948 ORTHO05D008703 3.3e-15 85.5 108 41.7
Ca_27396_v3 Cicer arietinum L. HOM05D006948 ORTHO05D008703 7.4e-15 84.3 83 49.4
Actinidia12660 Actinidia chinensis HOM05D006948 ORTHO05D008703 9.7e-15 84.0 80 52.5
Haze_02785 Corylus avellana HOM05D006948 ORTHO05D008703 9.7e-15 84.0 63 61.9
Haze_02790 Corylus avellana HOM05D006948 ORTHO05D008703 1.3e-14 83.6 63 61.9
AUR62013722 Chenopodium quinoa HOM05D006948 ORTHO05D008703 2.2e-14 82.8 79 49.4
ClCG05G000390 Citrullus lanatus HOM05D006948 ORTHO05D008703 4.8e-14 81.6 77 50.6
MELO3C005977.2 Cucumis melo HOM05D006948 ORTHO05D008703 8.2e-14 80.9 98 41.8
PGSC0003DMG401026039 Solanum tuberosum HOM05D006948 ORTHO05D008703 2.4e-13 79.3 82 46.3
Oeu035671.1 Olea europaea HOM05D006948 ORTHO05D008703 3.1e-13 79.0 82 51.2
Phvul.008G140300 Phaseolus vulgaris HOM05D006948 ORTHO05D008703 4.1e-13 78.6 96 40.6
RcHm_v2.0_Chr1g0346581 Rosa chinensis HOM05D006948 ORTHO05D008703 4.1e-13 78.6 108 42.6
Sed0014312 Sechium edule HOM05D006948 ORTHO05D008703 4.1e-13 78.6 100 42.0
QL04p033368 Quercus lobata HOM05D006948 ORTHO05D008703 7.0e-13 77.8 77 49.4
Migut.N01755 Erythranthe guttata HOM05D006948 ORTHO05D008703 1.2e-12 77.0 80 45.0
QL04p032282 Quercus lobata HOM05D006948 ORTHO05D008703 1.2e-12 77.0 68 51.5
Aqoxy7G00836 Aquilegia oxysepala HOM05D006948 ORTHO05D008703 1.6e-12 76.6 99 42.4
Migut.O00539 Erythranthe guttata HOM05D006948 ORTHO05D008703 1.6e-12 76.6 80 43.8
QL04p031942 Quercus lobata HOM05D006948 ORTHO05D008703 1.6e-12 76.6 76 48.7
FAN03G2439 Fragaria x ananassa HOM05D006948 ORTHO05D008703 2.0e-12 76.3 109 41.3
FAN10G3172 Fragaria x ananassa HOM05D006948 ORTHO05D008703 4.5e-12 75.1 96 43.8
FAN10G3965 Fragaria x ananassa HOM05D006948 ORTHO05D008703 4.5e-12 75.1 96 43.8
FAN01G0218 Fragaria x ananassa HOM05D006948 ORTHO05D008703 5.9e-12 74.7 96 43.8
Nn1g00906 Nelumbo nucifera HOM05D006948 ORTHO05D008703 5.9e-12 74.7 76 51.3
QL04p032169 Quercus lobata HOM05D006948 ORTHO05D008703 5.9e-12 74.7 62 53.2
QL04p033225 Quercus lobata HOM05D006948 ORTHO05D008703 5.9e-12 74.7 62 53.2
Haze_24986 Corylus avellana HOM05D006948 ORTHO05D008703 7.7e-12 74.3 63 57.1
FAN06G4415 Fragaria x ananassa HOM05D006948 ORTHO05D008703 7.7e-12 74.3 109 41.3
TAR629G0288 Trochodendron aralioides HOM05D006948 ORTHO05D000005 7.7e-12 74.3 55 65.5
Lj1g0016170 Lotus japonicus HOM05D006948 ORTHO05D008703 1.0e-11 73.9 94 41.5
FvH4_7g09680 Fragaria vesca HOM05D006948 ORTHO05D008703 2.2e-11 72.8 96 43.8
FAN06G1163 Fragaria x ananassa HOM05D006948 ORTHO05D008703 2.2e-11 72.8 96 43.8
CDE11G0572 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 3.8e-11 72.0 82 50.0
Psat3g154680 Pisum sativum HOM05D006948 ORTHO05D008703 3.8e-11 72.0 62 51.6
PSO675G6563 Papaver somniferum HOM05D006948 ORTHO05D008703 5.0e-11 71.6 105 38.1
unitig_0.g2760 Utricularia gibba HOM05D006948 ORTHO05D008703 8.5e-11 70.9 77 46.8
SalBow5G2465 Salvia bowleyana HOM05D006948 ORTHO05D008703 1.9e-10 69.7 62 51.6
SalBow5G5528 Salvia bowleyana HOM05D006948 ORTHO05D008703 1.9e-10 69.7 62 51.6
ATR0057G003 Amborella trichopoda HOM05D006948 ORTHO05D008703 4.2e-10 68.6 79 50.6
CDE02G3860 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 5.5e-10 68.2 81 49.4
Os04g0549400 Oryza sativa ssp. japonica HOM05D006948 ORTHO05D008703 7.2e-10 67.8 97 44.3
Zm00001eb429840 Zea mays HOM05D006948 ORTHO05D008703 9.4e-10 67.4 95 44.2
Sc23g0003950 Simmondsia chinensis HOM05D006948 ORTHO05D008703 4.7e-09 65.1 55 58.2
Thecc.01G390600 Theobroma cacao HOM05D006948 ORTHO05D008703 1.4e-08 63.5 50 64.0
MD07G1101200 Malus domestica HOM05D006948 ORTHO05D008703 1.5e-07 60.1 68 44.1
SEGI_25204 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 1.7e-06 56.6 74 48.6
SEGI_39218 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 1.7e-06 56.6 74 48.6
SHI13603 Sapria himalayana HOM05D006948 ORTHO05D008703 2.2e-06 56.2 57 49.1


User provided reference genes

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