Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p35370 Brassica napus HOM05D004531 ORTHO05D005484 3.2e-122 441.8 229 100.0
BolC8t51130H Brassica oleracea HOM05D004531 ORTHO05D005484 9.3e-122 440.3 229 99.6
BraA09t40693Z Brassica rapa HOM05D004531 ORTHO05D005484 6.0e-121 437.6 229 98.7
A09p52640 Brassica napus HOM05D004531 ORTHO05D005484 1.7e-120 436.0 229 98.3
BcaC02g10151 Brassica carinata HOM05D004531 ORTHO05D005484 7.3e-119 430.6 229 96.1
C04p32210 Brassica napus HOM05D004531 ORTHO05D005484 2.8e-118 428.7 229 95.6
BcaB02g08172 Brassica carinata HOM05D004531 ORTHO05D005484 3.1e-117 425.2 229 95.2
BcaC07g42771 Brassica carinata HOM05D004531 ORTHO05D005484 5.3e-117 424.5 229 95.6
A04p01660 Brassica napus HOM05D004531 ORTHO05D005484 9.0e-117 423.7 229 94.3
Sp5g02860 Schrenkiella parvula HOM05D004531 ORTHO05D005484 2.9e-115 418.7 229 94.8
SpUn0080_0040 Schrenkiella parvula HOM05D004531 ORTHO05D005484 2.9e-115 418.7 229 94.8
Thhalv10006222m.g Eutrema salsugineum HOM05D004531 ORTHO05D005484 5.3e-109 397.9 229 90.0
Carub.0005s2711 Capsella rubella HOM05D004531 ORTHO05D005484 2.0e-108 396.0 229 89.1
AL5G42600 Arabidopsis lyrata HOM05D004531 ORTHO05D005484 8.4e-107 390.6 229 87.3
AT3G60360 Arabidopsis thaliana HOM05D004531 ORTHO05D005484 6.0e-105 384.4 229 85.6
CARHR170680 Cardamine hirsuta HOM05D004531 ORTHO05D005484 3.3e-103 378.6 229 84.3
Aa31LG3G11700 Aethionema arabicum HOM05D004531 ORTHO05D005484 5.1e-88 328.2 231 72.3
THA.LOC104820245 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 3.8e-83 312.0 232 70.3
CSS0023033 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 2.1e-81 306.2 230 68.3
CAN.G641.37 Capsicum annuum HOM05D004531 ORTHO05D005484 6.1e-81 304.7 230 67.0
Lalb_Chr13g0291551 Lupinus albus HOM05D004531 ORTHO05D005484 1.4e-80 303.5 230 67.4
Manes.11G057800 Manihot esculenta HOM05D004531 ORTHO05D005484 1.8e-80 303.1 230 67.0
Atru.chr2.471 Acer truncatum HOM05D004531 ORTHO05D005484 2.3e-80 302.8 230 67.4
PGR042G0151 Punica granatum HOM05D004531 ORTHO05D005484 3.9e-80 302.0 230 68.3
Glyma.08G077300 Glycine max HOM05D004531 ORTHO05D005484 5.1e-80 301.6 230 67.4
Eucgr.A02172 Eucalyptus grandis HOM05D004531 ORTHO05D005484 8.8e-80 300.8 229 66.4
Nitab4.5_0010736g0010 Nicotiana tabacum HOM05D004531 ORTHO05D005484 1.5e-79 300.1 230 65.7
Potri.016G024300 Populus trichocarpa HOM05D004531 ORTHO05D005484 2.6e-79 299.3 230 65.7
Cc06_g18540 Coffea canephora HOM05D004531 ORTHO05D005484 3.3e-79 298.9 230 66.1
MELO3C008757.2 Cucumis melo HOM05D004531 ORTHO05D005484 4.4e-79 298.5 229 65.1
Thecc.05G127100 Theobroma cacao HOM05D004531 ORTHO05D005484 4.4e-79 298.5 230 64.3
Nitab4.5_0000646g0260 Nicotiana tabacum HOM05D004531 ORTHO05D005484 7.4e-79 297.7 230 64.8
Medtr4g094380 Medicago truncatula HOM05D004531 ORTHO05D005484 9.7e-79 297.4 230 65.2
Sed0018245 Sechium edule HOM05D004531 ORTHO05D005484 1.3e-78 297.0 230 64.8
PGSC0003DMG400008162 Solanum tuberosum HOM05D004531 ORTHO05D005484 1.3e-78 297.0 230 64.8
GSVIVG01029836001 Vitis vinifera HOM05D004531 ORTHO05D005484 1.7e-78 296.6 230 65.2
CsaV3_2G009570 Cucumis sativus L. HOM05D004531 ORTHO05D005484 2.2e-78 296.2 229 65.1
Prupe.4G200900 Prunus persica HOM05D004531 ORTHO05D005484 2.2e-78 296.2 229 65.5
Ciclev10012657m.g Citrus clementina HOM05D004531 ORTHO05D005484 3.7e-78 295.4 230 67.4
Nitab4.5_0000082g0350 Nicotiana tabacum HOM05D004531 ORTHO05D005484 3.7e-78 295.4 230 64.8
Prupe.8G106900 Prunus persica HOM05D004531 ORTHO05D005484 6.3e-78 294.7 229 64.6
Sabra16G0021800 Salix brachista HOM05D004531 ORTHO05D005484 6.3e-78 294.7 230 65.7
ClCG11G010890 Citrullus lanatus HOM05D004531 ORTHO05D005484 1.4e-77 293.5 229 63.8
Gohir.D10G227700 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.8e-77 293.1 230 64.8
VMungo0251G1523 Vigna mungo HOM05D004531 ORTHO05D005484 2.4e-77 292.7 230 64.3
vmacro07599 Vaccinium macrocarpon HOM05D004531 ORTHO05D005484 3.1e-77 292.4 230 65.2
Hma1.2p1_0341F.1_g130530 Hydrangea macrophylla HOM05D004531 ORTHO05D005484 4.1e-77 292.0 230 64.3
Lj7A661T48 Lonicera japonica HOM05D004531 ORTHO05D005484 4.1e-77 292.0 230 66.5
RcHm_v2.0_Chr5g0037141 Rosa chinensis HOM05D004531 ORTHO05D005484 4.1e-77 292.0 230 65.2
Duzib248G1029 Durio zibethinus HOM05D004531 ORTHO05D005484 5.3e-77 291.6 230 64.3
Migut.J01686 Erythranthe guttata HOM05D004531 ORTHO05D005484 5.3e-77 291.6 232 65.1
SalBow6G4182 Salvia bowleyana HOM05D004531 ORTHO05D005484 5.3e-77 291.6 230 66.5
Solyc10g079430.2 Solanum lycopersicum HOM05D004531 ORTHO05D005484 5.3e-77 291.6 230 63.5
Dinv37065 Davidia involucrata HOM05D004531 ORTHO05D005484 9.1e-77 290.8 230 65.2
Glyma.05G122300 Glycine max HOM05D004531 ORTHO05D005484 9.1e-77 290.8 230 66.1
DCAR_020613 Daucus carota HOM05D004531 ORTHO05D005484 2.6e-76 289.3 229 64.6
Gorai.011G260100 Gossypium raimondii HOM05D004531 ORTHO05D005484 3.5e-76 288.9 230 63.9
Phvul.002G203400 Phaseolus vulgaris HOM05D004531 ORTHO05D005484 4.5e-76 288.5 230 65.7
Gohir.A06G180300 Gossypium hirsutum HOM05D004531 ORTHO05D005484 7.7e-76 287.7 230 64.3
TPR.G23804 Trifolium pratense HOM05D004531 ORTHO05D005484 1.0e-75 287.3 231 66.2
TWI77G0822 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 1.0e-75 287.3 230 62.6
Ciclev10010418m.g Citrus clementina HOM05D004531 ORTHO05D005484 1.3e-75 287.0 230 63.9
MSTRG.6389 Avicennia marina HOM05D004531 ORTHO05D005484 2.2e-75 286.2 230 63.0
CANSAT56G3883 Cannabis sativa HOM05D004531 ORTHO05D005484 3.8e-75 285.4 230 63.0
COL.COLO4_07074 Corchorus olitorius HOM05D004531 ORTHO05D005484 6.5e-75 284.6 230 62.2
Nn5g28465 Nelumbo nucifera HOM05D004531 ORTHO05D005484 8.5e-75 284.3 230 61.7
Psat7g095600 Pisum sativum HOM05D004531 ORTHO05D005484 8.5e-75 284.3 230 63.9
arahy.Tifrunner.gnm1.ann1.8UG22X Arachis hypogaea HOM05D004531 ORTHO05D005484 1.1e-74 283.9 232 62.1
arahy.Tifrunner.gnm1.ann1.35U2WI Arachis hypogaea HOM05D004531 ORTHO05D005484 1.9e-74 283.1 232 61.6
Ca_18320_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 5.5e-74 281.6 230 63.5
Lj6g0006960 Lotus japonicus HOM05D004531 ORTHO05D005484 5.5e-74 281.6 230 62.6
ECA238G4589 Erigeron canadensis HOM05D004531 ORTHO05D005484 9.4e-74 280.8 229 62.0
MD11G1228700 Malus domestica HOM05D004531 ORTHO05D005484 9.4e-74 280.8 228 63.6
PSO210G4508 Papaver somniferum HOM05D004531 ORTHO05D005484 2.1e-73 279.6 229 62.9
MD15G1425000 Malus domestica HOM05D004531 ORTHO05D005484 2.7e-73 279.3 229 63.3
Os01g0810000 Oryza sativa ssp. japonica HOM05D004531 ORTHO05D005484 4.7e-73 278.5 230 61.7
RhsimUnG0021500 Rhododendron simsii HOM05D004531 ORTHO05D005484 4.7e-73 278.5 254 59.1
SGA_v2.0_scaffold69G23138 Striga asiatica HOM05D004531 ORTHO05D005484 4.7e-73 278.5 232 62.9
FvH4_3g21660 Fragaria vesca HOM05D004531 ORTHO05D005484 6.1e-73 278.1 230 61.7
Sabra16G0030200 Salix brachista HOM05D004531 ORTHO05D005484 6.1e-73 278.1 220 65.0
Sc15g0002670 Simmondsia chinensis HOM05D004531 ORTHO05D005484 1.4e-72 276.9 230 61.7
CiPaw.08G117500 Carya illinoinensis HOM05D004531 ORTHO05D005484 3.9e-72 275.4 230 60.4
MBI13_g30229_MAGBIO Magnolia biondii HOM05D004531 ORTHO05D005484 3.9e-72 275.4 238 60.5
HanXRQChr14g0437741 Helianthus annuus HOM05D004531 ORTHO05D005484 8.8e-72 274.2 230 60.9
PSO210G2223 Papaver somniferum HOM05D004531 ORTHO05D005484 1.5e-71 273.5 229 61.6
Peaxi162Scf00002g10416 Petunia axillaris HOM05D004531 ORTHO05D005484 3.3e-71 272.3 263 56.3
arahy.Tifrunner.gnm1.ann1.JM9XLQ Arachis hypogaea HOM05D004531 ORTHO05D005484 5.7e-71 271.6 232 60.8
TAR374G0360 Trochodendron aralioides HOM05D004531 ORTHO05D005484 5.7e-71 271.6 229 60.3
unitig_746.g26802 Utricularia gibba HOM05D004531 ORTHO05D005484 5.7e-71 271.6 230 61.3
HPP92_027481 Vanilla planifolia HOM05D004531 ORTHO05D005484 5.7e-71 271.6 230 62.2
AUR62022353 Chenopodium quinoa HOM05D004531 ORTHO05D005484 1.3e-70 270.4 230 58.7
AUR62034356 Chenopodium quinoa HOM05D004531 ORTHO05D005484 2.8e-70 269.2 230 59.6
Aqoxy2G03324 Aquilegia oxysepala HOM05D004531 ORTHO05D005484 6.3e-70 268.1 230 61.3
EL10Ac9g22646 Beta vulgaris HOM05D004531 ORTHO05D005484 8.2e-70 267.7 230 58.7
FAN11G1137 Fragaria x ananassa HOM05D004531 ORTHO05D005484 8.2e-70 267.7 252 56.7
MD11G1228500 Malus domestica HOM05D004531 ORTHO05D005484 8.2e-70 267.7 249 57.8
EL10Ac1g01672 Beta vulgaris HOM05D004531 ORTHO05D005484 2.4e-69 266.2 230 58.7
Lsat_1_v5_gn_2_52561 Lactuca sativa HOM05D004531 ORTHO05D005484 2.4e-69 266.2 220 62.7
Cpa.g.sc115.24 Carica papaya HOM05D004531 ORTHO05D005484 1.3e-67 260.4 233 58.4
BraA04t15890Z Brassica rapa HOM05D004531 ORTHO05D005484 9.4e-66 254.2 138 94.2
MELO3C023654.2 Cucumis melo HOM05D004531 ORTHO05D005484 9.4e-66 254.2 236 56.8
ClCG09G010350 Citrullus lanatus HOM05D004531 ORTHO05D005484 1.6e-65 253.4 220 60.0
Carub.0007s2695 Capsella rubella HOM05D004531 ORTHO05D005484 1.0e-64 250.8 175 76.6
Gohir.A08G129500 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.0e-64 250.8 230 58.7
RhsimUnG0117400 Rhododendron simsii HOM05D004531 ORTHO05D005484 4.8e-62 241.9 318 46.5
Haze_23723 Corylus avellana HOM05D004531 ORTHO05D005484 8.3e-62 241.1 307 46.9
SGA_v2.0_scaffold105G30334 Striga asiatica HOM05D004531 ORTHO05D005484 1.8e-61 240.0 199 60.8
Zm00001eb369240 Zea mays HOM05D004531 ORTHO05D005484 2.7e-60 236.1 214 57.5
QL09p051267 Quercus lobata HOM05D004531 ORTHO05D005484 1.0e-59 234.2 360 40.6
CsaV3_7G024290 Cucumis sativus L. HOM05D004531 ORTHO05D005484 2.7e-57 226.1 230 53.0
Mapoly0074s0052 Marchantia polymorpha HOM05D004531 ORTHO05D005484 7.0e-53 211.5 229 52.4
CDE07G2032 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 1.6e-52 210.3 180 62.8
SMO367G0994 Selaginella moellendorffii HOM05D004531 ORTHO05D005484 1.6e-52 210.3 230 47.8
TAR636G0629 Trochodendron aralioides HOM05D004531 ORTHO05D005484 1.6e-52 210.3 181 59.7
AagrBONN_evm.TU.Sc2ySwM_228.1021 Anthoceros agrestis HOM05D004531 ORTHO05D005484 3.5e-52 209.1 232 50.0
Duzib052G0496 Durio zibethinus HOM05D004531 ORTHO05D005484 1.2e-49 200.7 166 59.6
Nitab4.5_0002805g0150 Nicotiana tabacum HOM05D004531 ORTHO05D005484 1.6e-49 200.3 164 61.6
Sopen10g030070 Solanum pennellii HOM05D004531 ORTHO05D005484 5.2e-48 195.3 164 60.4
Ah.13g077510 Amaranthus hybridus HOM05D004531 ORTHO05D005484 2.6e-47 193.0 228 50.0
FAN16G0044 Fragaria x ananassa HOM05D004531 ORTHO05D005484 1.2e-44 184.1 164 58.5
Pp3c3_27620 Physcomitrium patens HOM05D004531 ORTHO05D005484 3.5e-44 182.6 234 45.3
Hund15691 Selenicereus undatus HOM05D004531 ORTHO05D005484 4.5e-44 182.2 141 63.1
Cfa002196 Carpinus fangiana HOM05D004531 ORTHO05D005484 1.0e-43 181.0 140 63.6
Hund22289 Selenicereus undatus HOM05D004531 ORTHO05D005484 8.6e-43 177.9 282 38.7
ATR1096G053 Amborella trichopoda HOM05D004531 ORTHO05D005484 1.9e-42 176.8 138 63.0
Dinv14546 Davidia involucrata HOM05D004531 ORTHO05D005484 5.2e-40 168.7 117 69.2
FAN21G3808 Fragaria x ananassa HOM05D004531 ORTHO05D005484 8.9e-40 167.9 149 57.7
Oeu020249.1 Olea europaea HOM05D004531 ORTHO05D005484 1.5e-39 167.2 110 72.7
MCO16G699 Micromonas commoda HOM05D004531 ORTHO05D005484 3.7e-38 162.5 241 44.0
CBR_g26482 Chara braunii HOM05D004531 ORTHO05D005484 1.2e-36 157.5 243 41.6
CDE07G0548 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 6.2e-33 145.2 140 55.7
PRCOL_00003072 Prasinoderma coloniale HOM05D004531 ORTHO05D005484 9.8e-31 137.9 266 36.8
Pp3s222_10 Physcomitrium patens HOM05D004531 ORTHO05D005484 1.4e-29 134.0 156 47.4
Ca_08745_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 3.2e-29 132.9 216 38.9
Cre13.g573050 Chlamydomonas reinhardtii HOM05D004531 ORTHO05D005484 2.7e-28 129.8 292 33.9
FAN25G0149 Fragaria x ananassa HOM05D004531 ORTHO05D005484 9.5e-26 121.3 137 48.9
Potri.006G026002 Populus trichocarpa HOM05D004531 ORTHO05D005484 4.0e-24 115.9 90 62.2
Psat3g051800 Pisum sativum HOM05D004531 ORTHO05D005484 8.3e-22 108.2 83 61.4
MD11G1228400 Malus domestica HOM05D004531 ORTHO05D005484 1.9e-21 107.1 125 49.6
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 2.1e-20 103.6 71 69.0
CSS0027948 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 9.6e-18 94.7 102 52.9
PSO210G0815 Papaver somniferum HOM05D004531 ORTHO05D005484 5.2e-16 89.0 80 62.5
Zm00001eb262530 Zea mays HOM05D000031 ORTHO05D445172 5.2e-16 89.0 71 56.3
Zm00001eb180730 Zea mays HOM05D004531 ORTHO05D005484 2.0e-15 87.0 63 61.9
CDE07G1261 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 1.3e-14 84.3 66 59.1
TWI38G0613 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 1.2e-12 77.8 105 47.6
SalBow8G3341 Salvia bowleyana HOM05D004531 ORTHO05D005484 2.7e-12 76.6 87 52.9
ATR1096G046 Amborella trichopoda HOM05D004531 ORTHO05D005484 3.5e-12 76.3 65 55.4
CARHR037650 Cardamine hirsuta HOM05D004531 ORTHO05D005484 3.5e-12 76.3 53 73.6
Cfa023089 Carpinus fangiana HOM05D004531 ORTHO05D005484 3.5e-12 76.3 137 36.5
Haze_26248 Corylus avellana HOM05D004531 ORTHO05D005484 1.7e-11 73.9 97 44.3
Gohir.A06G180400 Gossypium hirsutum HOM05D004531 ORTHO05D005484 3.0e-11 73.2 54 63.0
ECA238G1549 Erigeron canadensis HOM05D004531 ORTHO05D005484 4.3e-10 69.3 58 55.2
Oeu059360.1 Olea europaea HOM05D004531 ORTHO05D005484 4.4e-07 59.3 91 37.4
Oeu059364.1 Olea europaea HOM05D004531 ORTHO05D290784 3.8e-06 56.2 61 44.3
BcaB01g06120 Brassica carinata HOM05D006996 ORTHO05D008961 4.9e-06 55.8 58 55.2


User provided reference genes

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