Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 1.6e-130 469.5 263 100.0
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 1.6e-130 469.5 263 100.0
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 1.6e-130 469.5 263 100.0
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 2.0e-128 462.6 263 99.6
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 2.0e-128 462.6 263 99.6
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 1.3e-127 459.9 263 98.9
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 1.7e-127 459.5 263 98.9
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 1.7e-127 459.5 263 98.9
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 1.7e-127 459.5 263 98.9
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 2.2e-127 459.1 263 98.5
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 2.9e-127 458.8 263 98.9
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 2.9e-127 458.8 263 98.9
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 2.9e-127 458.8 263 98.9
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 2.9e-127 458.8 263 98.9
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 3.8e-127 458.4 263 98.5
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 4.9e-127 458.0 263 98.5
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 8.4e-127 457.2 264 95.5
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 7.1e-126 454.1 263 97.3
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 1.2e-125 453.4 263 97.3
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 7.9e-125 450.7 263 97.0
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 3.9e-124 448.4 263 96.2
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 1.9e-123 446.0 263 92.4
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 4.3e-123 444.9 263 95.4
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 4.8e-114 414.8 263 84.8
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 9.0e-113 410.6 263 84.0
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 9.3e-110 400.6 263 80.2
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 1.2e-109 400.2 263 81.0
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 2.7e-109 399.1 263 79.8
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 1.0e-108 397.1 263 79.5
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 1.0e-108 397.1 263 80.6
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 1.0e-108 397.1 263 79.5
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 1.3e-108 396.7 263 79.8
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 1.8e-108 396.4 263 79.8
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.8e-108 396.4 263 79.1
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.8e-108 396.4 263 79.1
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.8e-108 396.4 263 79.1
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 2.3e-108 396.0 263 78.3
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 3.0e-108 395.6 263 79.8
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 3.0e-108 395.6 264 79.9
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 3.0e-108 395.6 263 79.8
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 6.7e-108 394.4 263 78.7
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 8.7e-108 394.0 263 79.5
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.5e-107 393.3 263 79.5
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.5e-107 393.3 263 79.5
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.9e-107 392.9 263 78.3
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 2.5e-107 392.5 263 78.3
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 2.5e-107 392.5 263 78.3
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 3.3e-107 392.1 263 79.8
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 3.3e-107 392.1 263 78.7
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 3.3e-107 392.1 263 79.1
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 3.3e-107 392.1 263 78.7
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 3.3e-107 392.1 263 79.8
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 3.3e-107 392.1 263 78.7
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 4.3e-107 391.7 263 77.9
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 4.3e-107 391.7 263 77.9
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 4.3e-107 391.7 263 79.1
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 5.7e-107 391.3 263 77.6
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 5.7e-107 391.3 263 78.3
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 7.4e-107 391.0 263 79.5
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 7.4e-107 391.0 263 79.5
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 7.4e-107 391.0 263 79.5
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 9.7e-107 390.6 263 78.3
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 9.7e-107 390.6 263 77.6
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 9.7e-107 390.6 263 78.7
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.3e-106 390.2 263 77.9
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 1.6e-106 389.8 263 78.7
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 1.6e-106 389.8 263 79.1
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 1.6e-106 389.8 263 77.9
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 1.6e-106 389.8 263 78.3
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 2.2e-106 389.4 263 77.6
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 3.7e-106 388.7 263 78.7
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 3.7e-106 388.7 262 78.2
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 4.8e-106 388.3 263 78.3
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 4.8e-106 388.3 264 78.8
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 6.3e-106 387.9 263 77.9
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 6.3e-106 387.9 263 77.9
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 6.3e-106 387.9 263 78.3
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 8.2e-106 387.5 263 78.3
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 8.2e-106 387.5 263 79.1
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 1.8e-105 386.3 263 78.3
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.4e-105 386.0 263 77.9
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 3.1e-105 385.6 263 78.7
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 3.1e-105 385.6 263 77.2
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 4.1e-105 385.2 264 77.7
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 4.1e-105 385.2 264 77.7
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 5.3e-105 384.8 263 77.9
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 5.3e-105 384.8 263 76.4
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 5.3e-105 384.8 263 77.2
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 6.9e-105 384.4 263 78.3
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 6.9e-105 384.4 263 76.8
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 6.9e-105 384.4 263 77.2
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.2e-104 383.6 251 78.9
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 2.0e-104 382.9 263 76.8
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 2.6e-104 382.5 263 76.8
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 2.6e-104 382.5 263 76.4
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 3.4e-104 382.1 263 77.9
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 5.9e-104 381.3 264 77.3
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 5.9e-104 381.3 260 77.3
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 7.7e-104 380.9 263 76.4
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 7.7e-104 380.9 263 77.2
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 7.7e-104 380.9 263 77.9
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 1.0e-103 380.6 263 76.4
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 1.3e-103 380.2 264 76.5
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 1.3e-103 380.2 263 76.0
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 1.7e-103 379.8 263 77.6
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 2.2e-103 379.4 263 76.4
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 2.9e-103 379.0 263 76.0
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 6.5e-103 377.9 263 74.9
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.1e-102 377.1 263 77.2
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 2.5e-102 375.9 263 76.8
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 3.2e-102 375.6 263 75.3
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 7.2e-102 374.4 263 74.5
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 1.6e-101 373.2 263 76.4
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.6e-101 373.2 265 76.2
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 1.4e-100 370.2 248 79.4
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 3.9e-100 368.6 239 80.3
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 5.1e-100 368.2 264 75.4
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 1.5e-99 366.7 248 78.6
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 2.6e-99 365.9 263 74.5
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 2.6e-99 365.9 271 74.9
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 3.3e-99 365.5 246 78.5
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 1.7e-98 363.2 271 73.1
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 1.4e-97 360.1 264 74.2
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 1.8e-97 359.8 264 73.9
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 9.1e-97 357.5 263 73.4
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 1.2e-96 357.1 264 73.9
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 2.6e-96 355.9 264 73.9
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 7.7e-96 354.4 264 74.2
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 4.7e-93 345.1 249 74.7
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 5.7e-91 338.2 263 71.5
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 1.3e-90 337.0 264 70.5
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 4.8e-90 335.1 214 86.4
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 6.3e-90 334.7 250 71.2
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 8.2e-90 334.3 263 69.6
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 1.8e-89 333.2 218 80.3
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 3.1e-89 332.4 265 69.1
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.0e-87 327.4 238 70.2
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.0e-87 327.4 235 72.8
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 2.2e-87 326.2 241 73.4
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 2.5e-86 322.8 210 80.0
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 9.4e-86 320.9 226 73.0
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 1.2e-85 320.5 263 72.2
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.8e-84 316.6 250 66.0
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 1.8e-84 316.6 223 72.6
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 1.5e-83 313.5 265 64.2
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 2.0e-80 303.1 263 65.8
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 2.6e-75 286.2 268 59.3
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 4.1e-73 278.9 232 60.3
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 9.1e-73 277.7 220 64.1
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 1.7e-71 273.5 250 62.4
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.9e-70 270.0 250 61.6
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 2.1e-69 266.5 205 70.7
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 6.1e-69 265.0 208 67.3
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 2.4e-65 253.1 264 54.9
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 9.2e-65 251.1 263 58.6
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 2.7e-64 249.6 248 57.7
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 5.9e-64 248.4 138 97.1
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 2.8e-61 239.6 209 60.3
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 5.8e-51 205.3 235 54.5
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 1.1e-49 201.1 245 45.7
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 9.2e-49 198.0 247 48.2
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.5e-46 190.7 130 73.1
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 1.2e-43 181.0 120 76.7
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 3.5e-40 169.5 179 54.7
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 1.0e-39 167.9 119 76.5
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 7.1e-33 145.2 191 46.6
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 4.4e-27 125.9 127 55.9
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 1.6e-24 117.5 97 63.9
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 1.3e-18 97.8 57 86.0


User provided reference genes

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