Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p33690 Brassica napus HOM05D000162 ORTHO05D003288 4.9e-102 375.6 397 100.0
A09p62690 Brassica napus HOM05D000162 ORTHO05D000090 3.2e-21 107.1 139 49.6
BolC8t49189H Brassica oleracea HOM05D000032 ORTHO05D007907 1.3e-17 95.1 143 42.0
BcaC07g40274 Brassica carinata HOM05D000162 ORTHO05D003288 1.7e-17 94.7 47 93.6
BcaC07g41679 Brassica carinata HOM05D000162 ORTHO05D003288 2.8e-17 94.0 46 93.5
C08p15620 Brassica napus HOM05D000032 ORTHO05D007907 3.7e-17 93.6 143 41.3
AL1G23630 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 8.2e-17 92.4 146 56.8
BcaC07g40273 Brassica carinata HOM05D000162 ORTHO05D003288 2.9e-14 84.0 192 89.1
BolC8t52279H Brassica oleracea HOM05D000162 ORTHO05D000090 1.9e-13 81.3 89 73.0
C05p43270 Brassica napus HOM05D000162 ORTHO05D003288 5.5e-13 79.7 51 70.6
BcaC05g28279 Brassica carinata HOM05D000162 ORTHO05D003288 2.1e-12 77.8 51 68.6
BcaB03g13171 Brassica carinata HOM05D000162 ORTHO05D003288 1.4e-11 75.1 42 85.7
Eucgr.H04186 Eucalyptus grandis HOM05D000162 ORTHO05D000090 5.2e-11 73.2 145 31.7
AL1G24070 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 8.8e-11 72.4 41 78.0
BcaB08g34390 Brassica carinata HOM05D027743 ORTHO05D011376 1.5e-10 71.6 47 76.6
CARHR012890 Cardamine hirsuta HOM05D000162 ORTHO05D003288 1.5e-10 71.6 43 74.4
C08p15550 Brassica napus HOM05D000162 ORTHO05D000090 1.3e-09 68.6 46 76.1
BolC8t49183H Brassica oleracea HOM05D000162 ORTHO05D000090 1.3e-09 68.6 46 76.1
BcaB08g37453 Brassica carinata HOM05D000162 ORTHO05D003288 1.7e-09 68.2 47 72.3
A08p32720 Brassica napus HOM05D000162 ORTHO05D000090 1.7e-09 68.2 46 76.1
BraA08t35195Z Brassica rapa HOM05D000162 ORTHO05D000090 1.7e-09 68.2 46 76.1
Cc00_g04080 Coffea canephora HOM05D009346 ORTHO05D020421 1.7e-09 68.2 76 46.1
EL10Ac6g14755 Beta vulgaris HOM05D000249 ORTHO05D000206 2.8e-09 67.4 164 28.0
BcaB08g34277 Brassica carinata HOM05D000162 ORTHO05D003288 2.8e-09 67.4 47 72.3
ECA240G1124 Erigeron canadensis HOM05D005398 ORTHO05D000476 4.8e-09 66.6 91 39.6
A09p63620 Brassica napus HOM05D000162 ORTHO05D000090 6.3e-09 66.2 37 91.9
C08p45770 Brassica napus HOM05D003784 ORTHO05D004345 8.2e-09 65.9 35 88.6
BolC8t52131H Brassica oleracea HOM05D003784 ORTHO05D004345 8.2e-09 65.9 35 88.6
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 1.1e-08 65.5 41 73.2
ECA240G1752 Erigeron canadensis HOM05D000162 ORTHO05D000090 1.4e-08 65.1 90 37.8
Haze_03424 Corylus avellana HOM05D000027 ORTHO05D000500 1.8e-08 64.7 165 29.1
Nitab4.5_0000556g0140 Nicotiana tabacum HOM05D000162 ORTHO05D000090 1.8e-08 64.7 166 28.3
BolC8t52228H Brassica oleracea HOM05D000162 ORTHO05D000090 2.4e-08 64.3 41 73.2
BcaB08g34329 Brassica carinata HOM05D000162 ORTHO05D000090 3.1e-08 63.9 37 89.2
BcaB08g34233 Brassica carinata HOM05D000162 ORTHO05D000090 4.1e-08 63.5 46 71.7
BolC8t52305H Brassica oleracea HOM05D001827 ORTHO05D001790 5.3e-08 63.2 59 57.6
SalBow1G4634 Salvia bowleyana HOM05D042251 ORTHO05D002854 5.3e-08 63.2 90 35.6
ECA240G0604 Erigeron canadensis HOM05D000162 ORTHO05D000090 7.0e-08 62.8 92 34.8
BolC1t03937H Brassica oleracea HOM05D000162 ORTHO05D003288 9.1e-08 62.4 41 70.7
Ciclev10030383m.g Citrus clementina HOM05D000855 ORTHO05D000003 1.2e-07 62.0 175 25.7
BcaB08g34250 Brassica carinata HOM05D000162 ORTHO05D003288 2.6e-07 60.8 34 91.2
CDE06G1344 Ceratophyllum demersum HOM05D000175 ORTHO05D010751 2.6e-07 60.8 164 25.0
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 2.6e-07 60.8 163 25.2
Sc04g0002590 Simmondsia chinensis HOM05D002453 ORTHO05D002107 2.6e-07 60.8 91 39.6
Cc07_g18990 Coffea canephora HOM05D000162 ORTHO05D000090 3.5e-07 60.5 139 33.8
CDE04G3334 Ceratophyllum demersum HOM05D002453 ORTHO05D008746 4.5e-07 60.1 134 46.3
Lj2C43T6 Lonicera japonica HOM05D017878 ORTHO05D018225 4.5e-07 60.1 75 38.7
AL1G23620 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 5.9e-07 59.7 33 81.8
A09p63670 Brassica napus HOM05D000162 ORTHO05D000090 5.9e-07 59.7 35 80.0
C08p47160 Brassica napus HOM05D000162 ORTHO05D000090 5.9e-07 59.7 35 80.0
BolC8t52250H Brassica oleracea HOM05D000162 ORTHO05D000090 5.9e-07 59.7 35 85.7
Sp3g20240 Schrenkiella parvula HOM05D000162 ORTHO05D000090 5.9e-07 59.7 33 81.8
C09p56060 Brassica napus HOM05D000162 ORTHO05D003288 7.7e-07 59.3 37 75.7
BolC9t58473H Brassica oleracea HOM05D000162 ORTHO05D003288 7.7e-07 59.3 37 75.7
PSO017G7225 Papaver somniferum HOM05D000002 ORTHO05D000001 7.7e-07 59.3 169 39.1
ECA240G4803 Erigeron canadensis HOM05D000017 ORTHO05D000013 1.0e-06 58.9 82 40.2
BraA09t41715Z Brassica rapa HOM05D000162 ORTHO05D000090 1.3e-06 58.5 35 77.1
Manes.08G003100 Manihot esculenta HOM05D000855 ORTHO05D008530 1.3e-06 58.5 163 25.2
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 1.3e-06 58.5 163 25.2
BcaC07g41685 Brassica carinata HOM05D000162 ORTHO05D000090 1.7e-06 58.2 46 67.4
BolC8t52255H Brassica oleracea HOM05D000162 ORTHO05D000090 1.7e-06 58.2 46 67.4
Lj4g0021408 Lotus japonicus HOM05D003900 ORTHO05D015804 1.7e-06 58.2 184 23.4
arahy.Tifrunner.gnm1.ann1.3K1SXW Arachis hypogaea HOM05D000162 ORTHO05D000090 2.2e-06 57.8 158 24.7
Migut.F00914 Erythranthe guttata HOM05D000162 ORTHO05D000090 2.2e-06 57.8 148 26.4
HanXRQChr04g0104281 Helianthus annuus HOM05D016049 ORTHO05D019812 2.2e-06 57.8 48 50.0
Potri.019G062332 Populus trichocarpa HOM05D024593 ORTHO05D010307 2.2e-06 57.8 49 51.0
Rhsim13G0031600 Rhododendron simsii HOM05D001376 ORTHO05D003384 2.2e-06 57.8 136 31.6
Migut.G00831 Erythranthe guttata HOM05D000162 ORTHO05D000090 2.9e-06 57.4 170 26.5
FvH4_4g05081 Fragaria vesca HOM05D061794 ORTHO05D045457 2.9e-06 57.4 73 35.6
SalBow2G2477 Salvia bowleyana HOM05D000162 ORTHO05D000090 2.9e-06 57.4 117 29.1
Zm00001eb240730 Zea mays HOM05D039873 ORTHO05D037228 2.9e-06 57.4 42 50.0
ECA240G0231 Erigeron canadensis HOM05D000162 ORTHO05D000090 3.8e-06 57.0 94 34.0
ECA240G3374 Erigeron canadensis HOM05D000102 ORTHO05D000090 3.8e-06 57.0 87 36.8
FvH4_3g42580 Fragaria vesca HOM05D000002 ORTHO05D000001 3.8e-06 57.0 141 27.0
Hund21891 Selenicereus undatus HOM05D008994 ORTHO05D010954 3.8e-06 57.0 125 29.6
A09p63660 Brassica napus HOM05D000162 ORTHO05D000090 5.0e-06 56.6 32 87.5
BraA09t41634Z Brassica rapa HOM05D000162 ORTHO05D000090 5.0e-06 56.6 36 77.8
ECA240G4052 Erigeron canadensis HOM05D000162 ORTHO05D000090 5.0e-06 56.6 79 35.4
FAN11G0418 Fragaria x ananassa HOM05D003757 ORTHO05D000090 5.0e-06 56.6 140 27.1
PSO017G1665 Papaver somniferum HOM05D015807 ORTHO05D011376 5.0e-06 56.6 164 25.0
BcaC04g19405 Brassica carinata HOM05D000162 ORTHO05D003288 6.5e-06 56.2 40 67.5
C09p17650 Brassica napus HOM05D000162 ORTHO05D000090 6.5e-06 56.2 157 40.1
BolC9t54658H Brassica oleracea HOM05D000162 ORTHO05D024264 6.5e-06 56.2 157 40.1
CSS0040738 Camellia sinensis var. sinensis HOM05D000891 ORTHO05D000761 6.5e-06 56.2 148 28.4
CARHR050170 Cardamine hirsuta HOM05D015660 ORTHO05D000090 6.5e-06 56.2 148 27.0
Nitab4.5_0001998g0170 Nicotiana tabacum HOM05D000162 ORTHO05D000090 6.5e-06 56.2 151 28.5
vmacro08429 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 6.5e-06 56.2 146 26.7
AL1G24180 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 8.5e-06 55.8 31 77.4
BcaNung02971 Brassica carinata HOM05D000162 ORTHO05D011797 8.5e-06 55.8 90 32.2
BolC8t52230H Brassica oleracea HOM05D000162 ORTHO05D003288 8.5e-06 55.8 37 78.4
ECA247G2160 Erigeron canadensis HOM05D002453 ORTHO05D002107 8.5e-06 55.8 88 36.4
SGA_v2.0_scaffold52G19095 Striga asiatica HOM05D000162 ORTHO05D000090 8.5e-06 55.8 155 26.5


User provided reference genes

Program Settings