Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 9.0e-136 486.9 238 100.0
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 5.9e-111 404.4 258 77.5
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 7.6e-111 404.1 224 89.3
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 1.3e-110 403.3 259 76.1
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 1.4e-109 399.8 263 76.8
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 1.6e-108 396.4 249 77.5
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 7.9e-108 394.0 258 75.2
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 1.4e-107 393.3 259 77.2
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 3.0e-107 392.1 259 73.0
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 1.1e-106 390.2 249 76.7
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 1.1e-106 390.2 262 73.3
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 3.7e-105 385.2 257 73.9
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 5.9e-103 377.9 281 67.3
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 1.9e-101 372.9 297 64.3
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 2.1e-100 369.4 244 75.0
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 5.1e-99 364.8 247 72.5
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 5.7e-90 334.7 226 78.3
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 7.4e-90 334.3 257 66.1
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 1.7e-86 323.2 301 56.1
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 3.2e-85 318.9 182 87.9
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 3.3e-82 308.9 257 58.4
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 3.1e-80 302.4 257 58.0
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 9.1e-80 300.8 258 57.8
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.6e-79 300.1 258 57.4
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 2.7e-79 299.3 256 56.2
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 2.7e-79 299.3 257 57.6
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 1.0e-78 297.4 257 57.2
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 1.0e-78 297.4 257 58.0
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 1.0e-78 297.4 258 59.3
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 3.8e-78 295.4 255 56.9
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 5.0e-78 295.0 255 57.6
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 2.5e-77 292.7 253 57.7
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 2.5e-77 292.7 255 57.3
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 4.2e-77 292.0 255 57.6
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 9.4e-77 290.8 259 54.1
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 2.1e-76 289.7 254 56.7
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 2.1e-76 289.7 260 55.8
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 3.6e-76 288.9 257 56.0
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 8.0e-76 287.7 259 54.1
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 2.3e-75 286.2 260 53.5
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 3.0e-75 285.8 255 56.9
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 3.0e-75 285.8 255 56.9
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 3.0e-75 285.8 263 55.1
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 4.4e-74 282.0 258 54.7
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 7.5e-74 281.2 259 54.1
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 1.7e-73 280.0 257 53.7
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 1.7e-73 280.0 217 60.8
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 2.2e-73 279.6 257 53.7
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 6.3e-73 278.1 260 53.5
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 1.1e-72 277.3 259 51.7
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 4.1e-72 275.4 260 52.7
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.1e-72 275.4 260 52.7
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 4.1e-72 275.4 258 52.3
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 5.4e-72 275.0 258 54.3
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 5.4e-72 275.0 257 52.5
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 7.0e-72 274.6 256 53.5
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 9.1e-72 274.2 251 53.8
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 1.2e-71 273.9 298 48.7
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 1.6e-71 273.5 258 53.1
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.0e-71 273.1 207 61.4
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.0e-71 273.1 207 61.4
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 2.7e-71 272.7 258 53.1
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 2.7e-71 272.7 260 54.6
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 5.9e-71 271.6 220 57.3
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 7.7e-71 271.2 258 52.3
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.7e-70 270.0 259 52.9
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 2.3e-70 269.6 260 52.3
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.3e-70 269.6 251 53.8
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.3e-70 269.6 253 53.4
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 2.3e-70 269.6 257 53.7
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 2.9e-70 269.2 257 52.5
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 3.8e-70 268.9 263 54.0
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 3.8e-70 268.9 257 51.0
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 6.6e-70 268.1 257 52.9
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 1.5e-69 266.9 259 52.9
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 3.3e-69 265.8 258 50.0
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 4.2e-69 265.4 257 50.6
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 7.2e-69 264.6 260 52.7
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 1.2e-68 263.8 227 56.4
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 2.1e-68 263.1 279 49.1
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 2.8e-68 262.7 289 49.1
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 4.7e-68 261.9 257 49.0
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 1.8e-67 260.0 216 55.1
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 4.0e-67 258.8 237 54.0
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.2e-67 258.5 271 49.1
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 6.8e-67 258.1 142 83.8
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 8.3e-65 251.1 223 62.8
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.4e-64 250.4 241 53.1
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.8e-64 250.0 237 51.9
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 5.4e-64 248.4 259 48.3
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 9.2e-64 247.7 238 51.7
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 2.0e-63 246.5 325 42.2
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 5.9e-63 245.0 237 50.6
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 1.9e-61 240.0 200 57.5
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 3.3e-61 239.2 235 50.2
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.6e-60 236.9 212 53.8
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 3.6e-60 235.7 259 46.3
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 3.6e-60 235.7 234 50.4
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 2.3e-59 233.0 230 52.6
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 2.3e-59 233.0 278 43.2
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 4.0e-59 232.3 258 46.1
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 5.8e-58 228.4 269 44.6
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 4.1e-56 222.2 182 59.3
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.4e-56 221.9 200 55.0
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 2.0e-55 219.9 220 50.5
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 1.1e-53 214.2 167 58.1
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 4.7e-52 208.8 205 49.3
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.1e-48 197.6 171 55.0
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 1.4e-48 197.2 261 44.1
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 4.6e-47 192.2 214 46.3
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 2.5e-45 186.4 143 57.3
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 5.6e-45 185.3 211 44.5
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 1.2e-42 177.6 186 49.5
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 2.0e-42 176.8 225 43.1
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 1.3e-41 174.1 165 53.3
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 1.4e-40 170.6 217 41.0
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 4.1e-40 169.1 174 49.4
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 1.2e-39 167.5 190 43.7
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 7.8e-39 164.9 195 43.1
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 1.7e-38 163.7 126 65.1
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 3.9e-38 162.5 185 43.8
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 4.7e-36 155.6 130 57.7
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 2.4e-35 153.3 149 53.7
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 2.6e-34 149.8 204 40.2
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 1.9e-32 143.7 167 47.9
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 3.2e-32 142.9 187 40.1
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 3.0e-30 136.3 111 58.6
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 1.1e-27 127.9 214 36.4
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.8e-27 127.1 151 45.0
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.7e-25 120.6 89 61.8
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 2.9e-25 119.8 149 45.0
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.1e-24 117.9 103 55.3
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.4e-24 117.5 103 55.3
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.4e-24 117.5 106 52.8
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 1.7e-22 110.5 130 44.6
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 2.3e-22 110.2 351 25.6
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.9e-22 109.4 97 53.6
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 5.1e-22 109.0 223 29.6
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 6.6e-22 108.6 113 47.8
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 7.3e-21 105.1 96 54.2
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.4e-19 100.1 227 33.0
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.3e-19 99.0 66 59.1
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 6.9e-19 98.6 66 62.1
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.8e-18 95.5 66 59.1
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.7e-17 94.0 65 69.2
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 2.9e-17 93.2 256 27.0
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 1.2e-15 87.8 76 59.2
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.2e-15 87.8 71 57.7
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 1.3e-14 84.3 86 47.7
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 5.1e-14 82.4 51 68.6
SHI05852 Sapria himalayana HOM05D000002 ORTHO05D000001 1.1e-11 74.7 91 42.9
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 6.9e-11 72.0 82 48.8
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 6.9e-11 72.0 80 47.5
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 5.8e-10 68.9 82 47.6
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 5.8e-10 68.9 59 50.8
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 7.1e-08 62.0 44 61.4
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 1.2e-07 61.2 61 44.3
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 3.9e-06 56.2 40 57.5


User provided reference genes

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