Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 2.1e-109 399.1 203 100.0
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 3.4e-107 391.7 203 98.5
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 1.7e-95 352.8 205 90.7
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 9.2e-89 330.5 175 96.6
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 4.0e-84 315.1 174 93.1
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 2.0e-80 302.8 179 87.2
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 2.7e-80 302.4 160 93.1
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 1.3e-79 300.1 179 86.6
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 8.6e-79 297.4 159 93.1
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 4.7e-77 291.6 179 85.5
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 6.2e-77 291.2 173 86.1
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 4.9e-74 281.6 159 87.4
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 1.1e-73 280.4 181 80.7
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-72 276.9 160 88.1
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 4.3e-70 268.5 162 85.2
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 1.4e-68 263.5 179 78.8
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 2.3e-68 262.7 179 77.1
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 8.9e-68 260.8 160 82.5
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 1.3e-66 256.9 186 74.7
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 2.7e-64 249.2 163 79.1
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 2.5e-54 216.1 173 70.5
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.5e-48 195.7 200 58.5
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 7.1e-41 171.4 175 58.9
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 6.0e-40 168.3 181 58.6
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 2.1e-37 159.8 179 54.7
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 3.7e-37 159.1 175 54.9
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 6.2e-37 158.3 175 54.9
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 1.4e-36 157.1 175 54.3
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 9.0e-36 154.5 174 52.3
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 2.0e-35 153.3 176 50.0
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 4.5e-35 152.1 187 48.1
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 7.6e-35 151.4 174 51.7
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 1.0e-34 151.0 174 54.0
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 2.9e-34 149.4 174 53.4
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 6.5e-34 148.3 195 47.7
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 2.5e-33 146.4 182 48.4
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 4.2e-33 145.6 190 50.5
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 9.3e-33 144.4 186 48.4
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 2.1e-32 143.3 176 49.4
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 2.7e-32 142.9 181 48.1
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 4.6e-32 142.1 184 47.3
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 4.6e-32 142.1 186 47.8
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 1.0e-31 141.0 181 50.3
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.3e-31 140.6 187 47.1
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 1.3e-31 140.6 179 49.2
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 1.8e-31 140.2 190 47.9
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 1.8e-31 140.2 188 47.9
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 1.8e-31 140.2 181 49.2
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 3.0e-31 139.4 185 45.9
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 3.9e-31 139.0 184 48.9
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 5.1e-31 138.7 194 43.8
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.1e-31 138.7 187 46.5
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 5.1e-31 138.7 187 46.5
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 8.7e-31 137.9 186 46.2
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 8.7e-31 137.9 173 48.0
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 1.1e-30 137.5 182 46.7
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 1.1e-30 137.5 174 48.3
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 1.1e-30 137.5 185 45.4
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.9e-30 136.7 184 46.2
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 1.9e-30 136.7 163 49.7
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 2.5e-30 136.3 174 47.7
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.5e-30 136.3 177 46.9
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 2.5e-30 136.3 184 46.7
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 3.3e-30 136.0 188 47.9
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 3.3e-30 136.0 186 45.2
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 4.3e-30 135.6 191 44.5
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 4.3e-30 135.6 183 45.9
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.7e-30 135.2 179 48.6
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 7.4e-30 134.8 198 46.5
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 7.4e-30 134.8 176 46.0
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 9.6e-30 134.4 179 48.0
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 1.3e-29 134.0 186 45.7
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.3e-29 134.0 182 46.7
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.6e-29 133.7 201 47.3
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.1e-29 133.3 179 48.6
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 2.1e-29 133.3 187 43.9
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.8e-29 132.9 176 47.7
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.8e-29 132.9 182 46.2
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 3.7e-29 132.5 175 46.3
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 4.8e-29 132.1 196 40.8
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 4.8e-29 132.1 183 46.4
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 4.8e-29 132.1 187 46.0
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 6.3e-29 131.7 186 43.5
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 6.3e-29 131.7 198 45.5
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 8.2e-29 131.3 176 50.0
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 1.1e-28 131.0 214 42.1
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.1e-28 131.0 198 44.9
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.4e-28 130.6 198 42.4
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 1.4e-28 130.6 195 45.1
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.4e-28 130.6 195 45.1
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.4e-28 130.6 195 45.1
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 1.4e-28 130.6 185 44.9
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 2.4e-28 129.8 181 47.0
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 4.1e-28 129.0 176 46.6
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 6.9e-28 128.3 173 46.2
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 9.0e-28 127.9 170 47.1
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.2e-27 127.5 183 45.4
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.5e-27 127.1 161 48.4
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 1.5e-27 127.1 183 43.7
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 1.5e-27 127.1 185 45.9
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.5e-27 127.1 193 44.6
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 2.0e-27 126.7 204 42.2
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 2.0e-27 126.7 183 43.7
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 4.5e-27 125.6 201 43.8
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 5.9e-27 125.2 177 45.8
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 5.9e-27 125.2 196 45.4
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 5.9e-27 125.2 213 41.8
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 7.6e-27 124.8 185 44.9
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 7.6e-27 124.8 183 44.3
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 1.0e-26 124.4 210 41.4
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 1.0e-26 124.4 176 44.3
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 1.0e-26 124.4 173 49.7
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 1.0e-26 124.4 183 44.3
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 1.3e-26 124.0 178 46.6
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 2.9e-26 122.9 210 42.9
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 2.9e-26 122.9 180 43.9
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 3.8e-26 122.5 210 42.9
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 5.0e-26 122.1 173 45.1
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 5.0e-26 122.1 191 42.4
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 5.0e-26 122.1 118 56.8
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 6.5e-26 121.7 188 44.7
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 6.5e-26 121.7 189 42.3
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.4e-25 120.6 175 45.1
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.4e-25 120.6 175 45.1
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 2.5e-25 119.8 174 43.7
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.2e-25 119.4 121 57.0
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 4.2e-25 119.0 175 45.7
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 4.2e-25 119.0 190 43.2
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 5.5e-25 118.6 205 42.4
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 5.5e-25 118.6 178 44.4
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 7.2e-25 118.2 205 42.4
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 1.2e-24 117.5 178 42.7
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.6e-24 117.1 151 47.7
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 2.1e-24 116.7 180 44.4
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 2.1e-24 116.7 183 41.5
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 2.7e-24 116.3 187 39.0
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 7.9e-24 114.8 179 39.7
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 7.9e-24 114.8 195 41.5
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 1.8e-23 113.6 189 41.8
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 2.3e-23 113.2 171 43.3
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 3.0e-23 112.8 180 40.6
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 6.7e-23 111.7 188 40.4
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.1e-22 110.9 177 42.4
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 1.1e-22 110.9 195 41.0
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 1.1e-22 110.9 177 42.9
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 2.5e-22 109.8 167 43.7
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 2.5e-22 109.8 181 42.0
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 3.3e-22 109.4 213 41.3
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 3.3e-22 109.4 213 41.3
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 4.3e-22 109.0 145 44.8
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 4.3e-22 109.0 214 41.1
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 5.7e-22 108.6 186 40.3
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 9.7e-22 107.8 186 41.4
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 1.3e-21 107.5 198 36.9
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 2.2e-21 106.7 183 40.4
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 2.8e-21 106.3 197 40.1
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 3.7e-21 105.9 189 42.3
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 4.8e-21 105.5 185 40.5
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 8.2e-21 104.8 123 50.4
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.1e-20 104.4 146 43.8
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 2.4e-20 103.2 151 39.7
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 3.1e-20 102.8 200 38.5
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.5e-19 100.5 149 43.6
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 5.9e-19 98.6 175 43.4
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.3e-18 97.4 175 40.0
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 2.2e-18 96.7 144 39.6
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 3.8e-18 95.9 111 50.5
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 3.2e-17 92.8 170 38.8
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.8e-15 87.0 188 37.8
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 5.1e-15 85.5 136 38.2
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 8.8e-15 84.7 110 45.5
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 1.5e-14 84.0 158 36.1
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 2.5e-14 83.2 137 38.0
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 3.3e-14 82.8 103 46.6
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.4e-12 77.4 163 34.4
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 2.6e-11 73.2 181 34.8
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 5.9e-11 72.0 70 54.3
Carub.0004s2450 Capsella rubella HOM05D003703 ORTHO05D004278 1.0e-10 71.2 192 35.9
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 5.0e-10 68.9 66 56.1
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.4e-09 67.4 163 30.7
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.4e-09 67.4 81 48.1
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 7.9e-08 61.6 116 34.5
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 7.9e-08 61.6 67 50.7
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 6.7e-07 58.5 156 27.6


User provided reference genes

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