Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 1.4e-162 576.2 305 100.0
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 1.0e-123 447.2 257 95.3
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 8.9e-112 407.5 254 87.8
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 3.0e-99 365.9 256 80.9
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 1.4e-96 357.1 254 78.0
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 1.7e-86 323.6 265 69.4
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 1.0e-83 314.3 269 69.5
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 2.8e-81 306.2 261 69.7
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.7e-78 297.0 254 66.5
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 1.9e-77 293.5 262 66.0
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 1.0e-75 287.7 255 65.5
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 2.1e-68 263.5 268 60.4
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 4.3e-66 255.8 265 60.0
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 2.1e-65 253.4 267 59.2
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 2.4e-64 250.0 257 59.1
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 3.1e-64 249.6 256 61.3
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 7.6e-63 245.0 268 57.5
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 9.9e-63 244.6 267 57.3
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 7.1e-61 238.4 270 55.2
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 2.1e-60 236.9 258 59.3
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 5.6e-58 228.8 262 56.9
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 7.6e-55 218.4 254 53.9
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 7.6e-55 218.4 254 53.9
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 3.2e-53 213.0 255 53.3
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 3.9e-51 206.1 255 53.7
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 3.9e-51 206.1 255 53.7
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 1.8e-43 180.6 266 49.2
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 1.5e-42 177.6 158 65.2
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 9.7e-42 174.9 255 49.4
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 9.1e-40 168.3 268 44.8
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 1.5e-39 167.5 259 45.9
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 2.0e-39 167.2 264 45.1
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 2.6e-39 166.8 262 46.2
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 5.9e-39 165.6 265 44.5
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 7.7e-39 165.2 265 47.5
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 2.9e-38 163.3 261 45.6
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 3.8e-38 162.9 269 45.0
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 6.5e-38 162.2 270 43.0
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 6.5e-38 162.2 267 43.8
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 8.5e-38 161.8 270 44.4
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 1.1e-37 161.4 267 43.4
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 1.1e-37 161.4 261 44.4
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 1.9e-37 160.6 273 42.9
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 1.9e-37 160.6 255 45.5
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 2.5e-37 160.2 264 44.7
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 2.5e-37 160.2 257 44.4
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 3.2e-37 159.8 283 43.1
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 3.2e-37 159.8 257 45.1
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 1.2e-36 157.9 269 42.4
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 1.2e-36 157.9 268 45.1
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 1.2e-36 157.9 260 43.8
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 3.6e-36 156.4 267 40.8
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 3.6e-36 156.4 263 43.7
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 6.1e-36 155.6 267 40.8
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 6.1e-36 155.6 265 43.4
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 1.0e-35 154.8 261 45.6
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.0e-35 154.8 261 45.6
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 1.0e-35 154.8 262 44.3
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.8e-35 154.1 260 45.4
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.3e-35 153.7 263 44.1
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.3e-35 153.7 263 44.1
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 3.0e-35 153.3 264 44.3
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 3.9e-35 152.9 267 42.7
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 3.9e-35 152.9 264 43.9
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.9e-35 152.9 258 44.2
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.9e-35 152.9 305 41.3
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.9e-35 152.9 262 44.7
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 5.1e-35 152.5 260 44.6
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 6.7e-35 152.1 261 45.2
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 8.8e-35 151.8 267 42.7
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 1.1e-34 151.4 266 43.2
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.1e-34 151.4 287 40.8
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 1.5e-34 151.0 261 40.2
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 2.0e-34 150.6 267 44.2
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 2.6e-34 150.2 205 47.8
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 2.6e-34 150.2 265 44.2
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 3.3e-34 149.8 269 43.1
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 4.4e-34 149.4 288 41.7
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 4.4e-34 149.4 258 42.6
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 5.7e-34 149.1 268 44.4
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 7.4e-34 148.7 264 40.5
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 9.7e-34 148.3 270 42.6
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 2.2e-33 147.1 297 40.1
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 2.8e-33 146.7 270 44.1
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 3.7e-33 146.4 266 42.1
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 4.8e-33 146.0 266 42.9
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 8.2e-33 145.2 297 40.1
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 1.1e-32 144.8 264 43.6
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 1.1e-32 144.8 260 42.7
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 1.8e-32 144.1 264 40.5
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 3.1e-32 143.3 266 42.9
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 4.1e-32 142.9 311 37.0
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 6.9e-32 142.1 312 39.1
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 4.5e-31 139.4 273 40.7
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 5.9e-31 139.0 265 40.0
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 5.9e-31 139.0 272 40.8
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 7.7e-31 138.7 258 42.2
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.7e-30 137.5 270 41.9
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 1.7e-30 137.5 264 41.3
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 2.9e-30 136.7 267 40.4
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 5.0e-30 136.0 258 41.9
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 8.5e-30 135.2 160 53.1
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 8.5e-30 135.2 248 41.5
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.1e-29 134.8 262 40.8
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.9e-29 134.0 178 49.4
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 4.2e-29 132.9 275 41.5
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 1.6e-28 131.0 176 46.6
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.6e-28 131.0 270 40.7
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 2.7e-28 130.2 259 41.7
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 2.7e-28 130.2 264 41.3
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 3.6e-28 129.8 256 40.2
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 6.1e-28 129.0 170 51.8
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 8.0e-28 128.6 256 39.1
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 8.0e-28 128.6 262 42.0
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 1.0e-27 128.3 125 62.4
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 1.0e-27 128.3 245 41.2
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.4e-27 127.9 254 40.6
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 1.4e-27 127.9 262 40.5
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 1.4e-27 127.9 264 40.9
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 1.4e-27 127.9 253 40.7
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 1.8e-27 127.5 262 40.8
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 2.3e-27 127.1 262 41.6
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 3.0e-27 126.7 269 38.7
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 3.9e-27 126.3 256 39.8
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 1.1e-26 124.8 280 39.6
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 1.1e-26 124.8 260 39.6
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 1.1e-26 124.8 266 38.3
C03p27190 Brassica napus HOM05D003503 ORTHO05D003885 2.0e-26 124.0 221 41.2
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 5.7e-26 122.5 254 37.8
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 5.7e-26 122.5 260 39.6
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 2.2e-25 120.6 261 40.2
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 1.1e-24 118.2 164 47.6
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.1e-24 118.2 268 38.8
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.4e-24 117.9 264 39.0
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 1.4e-24 117.9 270 38.1
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 1.8e-24 117.5 171 42.1
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 2.4e-24 117.1 189 45.5
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 3.1e-24 116.7 197 44.7
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 5.3e-24 115.9 257 37.7
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.2e-23 114.8 259 37.1
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 4.5e-23 112.8 181 45.3
BolC7t41959H Brassica oleracea HOM05D003503 ORTHO05D003885 7.7e-23 112.1 127 58.3
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 1.0e-22 111.7 254 41.3
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 1.3e-22 111.3 197 42.6
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 1.7e-22 110.9 175 45.1
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 2.2e-22 110.5 252 36.5
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 2.9e-22 110.2 178 46.6
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 1.9e-21 107.5 258 37.2
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 1.9e-21 107.5 265 38.1
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 2.5e-21 107.1 254 36.2
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 2.5e-21 107.1 153 46.4
C04p28750 Brassica napus HOM05D003503 ORTHO05D003885 1.2e-20 104.8 97 64.9
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.2e-20 104.8 244 35.2
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 3.6e-20 103.2 255 36.1
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 8.0e-20 102.1 149 49.0
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 1.2e-18 98.2 83 68.7
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 1.2e-18 98.2 256 35.9
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.5e-18 97.8 255 36.1
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 3.3e-18 96.7 176 42.0
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 4.4e-18 96.3 256 35.2
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 7.5e-18 95.5 177 41.2
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.7e-17 94.4 254 31.9
C03p27180 Brassica napus HOM05D003503 ORTHO05D003885 2.2e-17 94.0 77 71.4
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 1.1e-16 91.7 202 38.1
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 4.1e-16 89.7 258 31.0
C04p28740 Brassica napus HOM05D003503 ORTHO05D003885 5.3e-16 89.4 100 57.0
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 9.1e-16 88.6 254 34.3
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 2.9e-14 83.6 255 31.0
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 3.8e-14 83.2 256 34.8
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 5.2e-11 72.8 360 26.4
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 1.2e-10 71.6 75 56.0
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 1.2e-10 71.6 130 41.5
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 2.8e-09 67.0 136 37.5
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 6.3e-09 65.9 53 60.4
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 6.3e-09 65.9 66 57.6
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 2.4e-08 63.9 203 31.5
MBI01_g36437_MAGBIO Magnolia biondii HOM05D003503 ORTHO05D003885 5.4e-08 62.8 236 30.1
Os04g0472700 Oryza sativa ssp. japonica HOM05D003503 ORTHO05D003885 5.4e-08 62.8 188 30.3
BraA07t28705Z Brassica rapa HOM05D003503 ORTHO05D003885 7.0e-08 62.4 74 54.1
RcHm_v2.0_Chr7g0219161 Rosa chinensis HOM05D003503 ORTHO05D003885 2.0e-07 60.8 124 37.1
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 2.7e-07 60.5 265 28.7
Os02g0591500 Oryza sativa ssp. japonica HOM05D020767 ORTHO05D003885 5.9e-07 59.3 201 30.8
Zm00001eb079910 Zea mays HOM05D003503 ORTHO05D003885 1.7e-06 57.8 182 33.0
unitig_26.g8909 Utricularia gibba HOM05D003503 ORTHO05D003885 8.6e-06 55.5 146 34.9


User provided reference genes

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