Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p33280 Brassica napus HOM05D001718 ORTHO05D021731 2.6e-56 221.9 114 100.0
BraA09t40514Z Brassica rapa HOM05D001718 ORTHO05D021731 7.3e-51 203.8 117 92.3
A09p50660 Brassica napus HOM05D001718 ORTHO05D021731 7.0e-46 187.2 119 86.6
BcaC07g40350 Brassica carinata HOM05D001718 ORTHO05D021731 5.0e-44 181.0 106 92.5
BcaC07g40353 Brassica carinata HOM05D001718 ORTHO05D007949 2.1e-42 175.6 117 82.1
A09p50530 Brassica napus HOM05D001718 ORTHO05D007949 2.1e-42 175.6 117 82.1
C08p33260 Brassica napus HOM05D001718 ORTHO05D007949 2.1e-42 175.6 117 82.1
BolC8t50928H Brassica oleracea HOM05D001718 ORTHO05D007949 2.1e-42 175.6 117 82.1
BraA09t40507Z Brassica rapa HOM05D001718 ORTHO05D007949 1.4e-41 172.9 117 80.3
BcaC07g40148 Brassica carinata HOM05D001718 ORTHO05D007949 3.1e-41 171.8 117 79.5
Thhalv10005897m.g Eutrema salsugineum HOM05D001718 ORTHO05D007949 7.5e-40 167.2 117 76.9
Carub.0005s2451 Capsella rubella HOM05D001718 ORTHO05D007949 1.4e-38 162.9 116 76.7
AL5G39300 Arabidopsis lyrata HOM05D001718 ORTHO05D007949 2.4e-38 162.2 116 75.9
CARHR167880 Cardamine hirsuta HOM05D001718 ORTHO05D007949 3.2e-38 161.8 116 74.1
AT3G57680 Arabidopsis thaliana HOM05D001718 ORTHO05D007949 9.2e-38 160.2 116 73.3
Sp5g04950 Schrenkiella parvula HOM05D001718 ORTHO05D007949 7.3e-35 150.6 119 71.4
THA.LOC104819007 Tarenaya hassleriana HOM05D001718 ORTHO05D007949 1.8e-33 146.0 114 71.9
TAR633G2084 Trochodendron aralioides HOM05D001718 ORTHO05D007949 1.3e-31 139.8 114 65.8
Manes.09G029500 Manihot esculenta HOM05D001718 ORTHO05D007949 1.7e-31 139.4 114 67.5
Cfa016868 Carpinus fangiana HOM05D001718 ORTHO05D007949 2.2e-31 139.0 114 66.7
Haze_19914 Corylus avellana HOM05D001718 ORTHO05D007949 2.2e-31 139.0 114 66.7
CiPaw.09G034600 Carya illinoinensis HOM05D001718 ORTHO05D007949 2.9e-31 138.7 114 66.7
ClCG04G000670 Citrullus lanatus HOM05D001718 ORTHO05D007949 1.9e-30 136.0 114 64.9
Atru.chr1.1027 Acer truncatum HOM05D001718 ORTHO05D007949 2.4e-30 135.6 114 64.9
Nn2g15432 Nelumbo nucifera HOM05D001718 ORTHO05D007949 2.4e-30 135.6 114 64.9
MBI01_g27617_MAGBIO Magnolia biondii HOM05D001718 ORTHO05D007949 3.2e-30 135.2 113 65.5
vmacro07869 Vaccinium macrocarpon HOM05D001718 ORTHO05D007949 3.2e-30 135.2 115 64.3
Actinidia09361 Actinidia chinensis HOM05D001718 ORTHO05D007949 5.4e-30 134.4 101 69.3
Rhsim03G0012100 Rhododendron simsii HOM05D001718 ORTHO05D007949 1.6e-29 132.9 114 65.8
QL07p021843 Quercus lobata HOM05D001718 ORTHO05D007949 2.1e-29 132.5 114 63.2
MELO3C009027.2 Cucumis melo HOM05D001718 ORTHO05D007949 3.5e-29 131.7 112 64.3
Lsat_1_v5_gn_8_80041 Lactuca sativa HOM05D001718 ORTHO05D007949 3.5e-29 131.7 115 63.5
Lj2A378G22 Lonicera japonica HOM05D001718 ORTHO05D007949 3.5e-29 131.7 113 65.5
Duzib093G0858 Durio zibethinus HOM05D001718 ORTHO05D007949 4.6e-29 131.3 114 63.2
Gohir.A01G196000 Gossypium hirsutum HOM05D001718 ORTHO05D007949 4.6e-29 131.3 103 68.0
Gohir.D01G186400 Gossypium hirsutum HOM05D001718 ORTHO05D007949 4.6e-29 131.3 103 68.0
Gorai.002G229800 Gossypium raimondii HOM05D001718 ORTHO05D007949 4.6e-29 131.3 103 68.0
Prupe.7G068000 Prunus persica HOM05D001718 ORTHO05D007949 4.6e-29 131.3 114 65.8
SalBow6G4514 Salvia bowleyana HOM05D001718 ORTHO05D007949 4.6e-29 131.3 117 60.7
GSVIVG01033332001 Vitis vinifera HOM05D001718 ORTHO05D007949 4.6e-29 131.3 95 70.5
Dinv24121 Davidia involucrata HOM05D001718 ORTHO05D007949 6.0e-29 131.0 114 63.2
Cpa.g.sc85.132 Carica papaya HOM05D001718 ORTHO05D007949 1.3e-28 129.8 114 63.2
Duzib106G1478 Durio zibethinus HOM05D001718 ORTHO05D007949 1.7e-28 129.4 103 67.0
Migut.J01789 Erythranthe guttata HOM05D001718 ORTHO05D007949 1.7e-28 129.4 113 64.6
HanXRQChr05g0132201 Helianthus annuus HOM05D001718 ORTHO05D007949 1.7e-28 129.4 115 61.7
CSS0042564 Camellia sinensis var. sinensis HOM05D001718 ORTHO05D007949 2.3e-28 129.0 116 63.8
CsaV3_4G031400 Cucumis sativus L. HOM05D001718 ORTHO05D007949 2.3e-28 129.0 119 60.5
Sabra06G0039300 Salix brachista HOM05D001718 ORTHO05D007949 5.1e-28 127.9 114 62.3
FvH4_6g23140 Fragaria vesca HOM05D001718 ORTHO05D007949 6.6e-28 127.5 106 66.0
MD14G1066000 Malus domestica HOM05D001718 ORTHO05D007949 6.6e-28 127.5 113 62.8
Potri.006G055400 Populus trichocarpa HOM05D001718 ORTHO05D007949 6.6e-28 127.5 114 62.3
COL.COLO4_28683 Corchorus olitorius HOM05D001718 ORTHO05D007949 8.6e-28 127.1 103 67.0
FAN14G2301 Fragaria x ananassa HOM05D001718 ORTHO05D007949 8.6e-28 127.1 106 66.0
FAN02G1268 Fragaria x ananassa HOM05D001718 ORTHO05D007949 1.1e-27 126.7 106 66.0
MSTRG.6454 Avicennia marina HOM05D001718 ORTHO05D007949 1.5e-27 126.3 113 63.7
Ciclev10004757m.g Citrus clementina HOM05D001718 ORTHO05D007949 1.5e-27 126.3 114 62.3
Nitab4.5_0000452g0010 Nicotiana tabacum HOM05D001718 ORTHO05D007949 1.9e-27 125.9 113 60.2
Thecc.05G163200 Theobroma cacao HOM05D001718 ORTHO05D007949 1.9e-27 125.9 106 64.2
TWI74G0848 Tripterygium wilfordii HOM05D001718 ORTHO05D007949 1.9e-27 125.9 114 63.2
RcHm_v2.0_Chr3g0480991 Rosa chinensis HOM05D001718 ORTHO05D007949 2.5e-27 125.6 106 65.1
DCAR_013578 Daucus carota HOM05D001718 ORTHO05D007949 3.3e-27 125.2 113 61.9
Nitab4.5_0002861g0040 Nicotiana tabacum HOM05D001718 ORTHO05D007949 4.3e-27 124.8 113 59.3
Aqoxy1G00219 Aquilegia oxysepala HOM05D001718 ORTHO05D007949 5.6e-27 124.4 114 59.6
Cc06_g16540 Coffea canephora HOM05D001718 ORTHO05D007949 7.3e-27 124.0 100 67.0
Eucgr.A02402 Eucalyptus grandis HOM05D001718 ORTHO05D007949 9.6e-27 123.6 114 63.2
MD12G1066100 Malus domestica HOM05D001718 ORTHO05D007949 9.6e-27 123.6 114 60.5
arahy.Tifrunner.gnm1.ann1.5NB5PV Arachis hypogaea HOM05D001718 ORTHO05D007949 2.1e-26 122.5 96 70.8
arahy.Tifrunner.gnm1.ann1.Q9AIC8 Arachis hypogaea HOM05D001718 ORTHO05D007949 2.1e-26 122.5 96 70.8
PSO384G3132 Papaver somniferum HOM05D001718 ORTHO05D007949 2.1e-26 122.5 114 61.4
Hund24747 Selenicereus undatus HOM05D001718 ORTHO05D007949 2.1e-26 122.5 116 56.9
SGA_v2.0_scaffold105G30454 Striga asiatica HOM05D001718 ORTHO05D007949 2.1e-26 122.5 106 62.3
CANSAT78G0973 Cannabis sativa HOM05D001718 ORTHO05D007949 2.8e-26 122.1 111 61.3
PGR004G2457 Punica granatum HOM05D001718 ORTHO05D007949 4.7e-26 121.3 114 62.3
Glyma.10G094900 Glycine max HOM05D001718 ORTHO05D007949 6.2e-26 120.9 115 60.9
EL10Ac3g07007 Beta vulgaris HOM05D001718 ORTHO05D007949 2.4e-25 119.0 117 54.7
CAN.G115.8 Capsicum annuum HOM05D001718 ORTHO05D007949 2.4e-25 119.0 113 58.4
Phvul.007G255600 Phaseolus vulgaris HOM05D001718 ORTHO05D007949 4.0e-25 118.2 115 60.9
HPP92_022797 Vanilla planifolia HOM05D001718 ORTHO05D007949 4.0e-25 118.2 106 59.4
TPR.G22782 Trifolium pratense HOM05D001718 ORTHO05D007949 5.2e-25 117.9 100 67.0
VMungo0720G1950 Vigna mungo HOM05D001718 ORTHO05D007949 8.9e-25 117.1 115 60.9
Zm00001eb381590 Zea mays HOM05D001718 ORTHO05D007949 8.9e-25 117.1 118 57.6
Medtr1g052135 Medicago truncatula HOM05D001718 ORTHO05D007949 1.5e-24 116.3 100 66.0
Sc13g0001990 Simmondsia chinensis HOM05D001718 ORTHO05D007949 1.5e-24 116.3 115 55.7
Os06g0318600 Oryza sativa ssp. japonica HOM05D001718 ORTHO05D007949 2.0e-24 115.9 89 68.5
PGSC0003DMG400033928 Solanum tuberosum HOM05D001718 ORTHO05D007949 2.0e-24 115.9 113 56.6
Lsat_1_v5_gn_9_49740 Lactuca sativa HOM05D001718 ORTHO05D007949 2.6e-24 115.5 115 57.4
Solyc03g059260.4 Solanum lycopersicum HOM05D001718 ORTHO05D007949 3.4e-24 115.2 113 55.8
Sopen03g013610 Solanum pennellii HOM05D001718 ORTHO05D007949 3.4e-24 115.2 113 55.8
Sed0001386 Sechium edule HOM05D001718 ORTHO05D007949 4.4e-24 114.8 104 62.5
ATR0605G274 Amborella trichopoda HOM05D001718 ORTHO05D007949 5.8e-24 114.4 111 58.6
AUR62024389 Chenopodium quinoa HOM05D001718 ORTHO05D007949 5.8e-24 114.4 117 53.0
AUR62025984 Chenopodium quinoa HOM05D001718 ORTHO05D007949 5.8e-24 114.4 113 55.8
Ca_10140_v3 Cicer arietinum L. HOM05D001718 ORTHO05D007949 5.8e-24 114.4 100 66.0
Lj5g0011485 Lotus japonicus HOM05D001718 ORTHO05D007949 7.6e-24 114.0 116 56.9
Psat6g123600 Pisum sativum HOM05D001718 ORTHO05D007949 7.6e-24 114.0 117 58.1
Lsat_1_v5_gn_3_116660 Lactuca sativa HOM05D001718 ORTHO05D007949 1.3e-23 113.2 101 64.4
Migut.K01152 Erythranthe guttata HOM05D001718 ORTHO05D007949 2.2e-23 112.5 124 54.8
Lsat_1_v5_gn_3_85020 Lactuca sativa HOM05D001718 ORTHO05D007949 8.4e-23 110.5 106 59.4
SEGI_38104 Sequoiadendron giganteum HOM05D001718 ORTHO05D007949 1.3e-20 103.2 107 55.1
Pp3c12_26230 Physcomitrium patens HOM05D001718 ORTHO05D007949 1.6e-18 96.3 114 46.5
Peaxi162Scf00189g00041 Petunia axillaris HOM05D001718 ORTHO05D007949 2.1e-18 95.9 98 54.1
Oeu004009.1 Olea europaea HOM05D001718 ORTHO05D021731 4.8e-18 94.7 81 59.3
Migut.B01592 Erythranthe guttata HOM05D001718 ORTHO05D007949 3.1e-17 92.0 69 69.6
Mapoly0039s0084 Marchantia polymorpha HOM05D001718 ORTHO05D007949 4.5e-16 88.2 120 45.8
Lsat_1_v5_gn_2_4801 Lactuca sativa HOM05D001718 ORTHO05D007949 9.3e-14 80.5 77 57.1
SMO200G0188 Selaginella moellendorffii HOM05D001718 ORTHO05D007949 2.8e-10 68.9 72 44.4
Cre10.g453807 Chlamydomonas reinhardtii HOM05D001718 ORTHO05D007949 8.1e-10 67.4 120 36.7
Cre10.g426050 Chlamydomonas reinhardtii HOM05D001718 ORTHO05D007949 2.2e-07 59.3 80 38.8
A09p21500 Brassica napus HOM05D001317 ORTHO05D001164 6.4e-07 57.8 38 73.7
BraA09t37749Z Brassica rapa HOM05D001317 ORTHO05D001164 6.4e-07 57.8 38 73.7
AagrBONN_evm.TU.Sc2ySwM_344.2287 Anthoceros agrestis HOM05D001718 ORTHO05D007949 8.4e-07 57.4 149 32.2
C06p15110 Brassica napus HOM05D001718 ORTHO05D007949 1.1e-06 57.0 49 59.2


User provided reference genes

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