Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40352 Brassica carinata HOM05D005524 ORTHO05D005392 2.3e-22 108.2 62 100.0
C08p33270 Brassica napus HOM05D005524 ORTHO05D005392 2.3e-22 108.2 62 100.0
BolC8t50929H Brassica oleracea HOM05D005524 ORTHO05D005392 2.3e-22 108.2 62 100.0
A09p50540 Brassica napus HOM05D005524 ORTHO05D005392 5.0e-22 107.1 62 96.8
BcaC02g09954 Brassica carinata HOM05D005524 ORTHO05D005392 1.1e-21 105.9 62 95.2
A04p02980 Brassica napus HOM05D005524 ORTHO05D005392 1.1e-21 105.9 62 95.2
C04p34740 Brassica napus HOM05D005524 ORTHO05D005392 1.1e-21 105.9 62 95.2
BolC4t25028H Brassica oleracea HOM05D005524 ORTHO05D005392 1.1e-21 105.9 62 95.2
BraA04t16021Z Brassica rapa HOM05D005524 ORTHO05D005392 1.1e-21 105.9 62 95.2
BcaB02g08300 Brassica carinata HOM05D005524 ORTHO05D005392 2.5e-21 104.8 62 95.2
BcaB02g08302 Brassica carinata HOM05D005524 ORTHO05D005392 2.5e-21 104.8 62 95.2
BcaC08g44863 Brassica carinata HOM05D005524 ORTHO05D005392 2.5e-21 104.8 62 93.5
BolC6t37629H Brassica oleracea HOM05D005524 ORTHO05D005392 2.5e-21 104.8 62 93.5
AT3G57690 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 5.6e-21 103.6 62 93.5
BcaB02g07583 Brassica carinata HOM05D005524 ORTHO05D005392 5.6e-21 103.6 62 93.5
A07p23640 Brassica napus HOM05D005524 ORTHO05D005392 7.3e-21 103.2 62 91.9
C06p24770 Brassica napus HOM05D005524 ORTHO05D005392 7.3e-21 103.2 62 91.9
BraA07t30018Z Brassica rapa HOM05D005524 ORTHO05D005392 7.3e-21 103.2 62 91.9
BraA09t40508Z Brassica rapa HOM05D005524 ORTHO05D005392 7.3e-21 103.2 62 93.5
BcaC07g40149 Brassica carinata HOM05D005524 ORTHO05D005392 1.2e-20 102.4 62 95.2
CARHR167870 Cardamine hirsuta HOM05D005524 ORTHO05D005392 1.2e-20 102.4 62 91.9
Sp5g04940 Schrenkiella parvula HOM05D005524 ORTHO05D005392 6.2e-20 100.1 63 92.1
AL5G39310 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 8.9e-19 96.3 63 88.9
Aa31LG10G12450 Aethionema arabicum HOM05D005524 ORTHO05D005392 2.9e-17 91.3 62 82.3
BcaNung07196 Brassica carinata HOM05D005524 ORTHO05D005392 1.2e-15 85.9 63 84.1
BcaB06g29217 Brassica carinata HOM05D005524 ORTHO05D005392 1.6e-15 85.5 63 82.5
BcaC02g07275 Brassica carinata HOM05D005524 ORTHO05D005392 3.5e-15 84.3 63 82.5
A04p31910 Brassica napus HOM05D005524 ORTHO05D005392 3.5e-15 84.3 63 82.5
C04p69380 Brassica napus HOM05D005524 ORTHO05D005392 3.5e-15 84.3 63 82.5
BolC4t28440H Brassica oleracea HOM05D005524 ORTHO05D005392 3.5e-15 84.3 63 82.5
BraA04t18649Z Brassica rapa HOM05D005524 ORTHO05D005392 3.5e-15 84.3 63 82.5
AT2G41905 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 7.8e-15 83.2 63 81.0
Sp4g24180 Schrenkiella parvula HOM05D005524 ORTHO05D005392 1.0e-14 82.8 63 81.0
BcaB01g03426 Brassica carinata HOM05D005524 ORTHO05D005392 1.3e-14 82.4 63 79.4
AL4G40250 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 2.3e-14 81.6 63 79.4
Carub.0004s2422 Capsella rubella HOM05D005524 ORTHO05D005392 3.0e-14 81.3 63 77.8
A03p23470 Brassica napus HOM05D005524 ORTHO05D005392 5.0e-14 80.5 63 79.4
BraA03t11563Z Brassica rapa HOM05D005524 ORTHO05D005392 5.0e-14 80.5 63 79.4
Carub.0005s2453 Capsella rubella HOM05D005524 ORTHO05D005392 6.6e-14 80.1 63 79.4
CARHR137000 Cardamine hirsuta HOM05D005524 ORTHO05D005392 6.6e-14 80.1 63 76.2
BcaC01g05321 Brassica carinata HOM05D005524 ORTHO05D005392 1.1e-13 79.3 63 77.8
C03p27990 Brassica napus HOM05D005524 ORTHO05D005392 1.1e-13 79.3 63 77.8
BolC3t15170H Brassica oleracea HOM05D005524 ORTHO05D005392 1.1e-13 79.3 63 77.8
ClCG10G012450 Citrullus lanatus HOM05D005524 ORTHO05D005392 3.6e-12 74.3 62 67.7
Thecc.01G412500 Theobroma cacao HOM05D005524 ORTHO05D005392 1.1e-11 72.8 62 67.7
Potri.006G056200 Populus trichocarpa HOM05D005524 ORTHO05D005392 2.3e-11 71.6 62 64.5
CSS0011241 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 6.8e-11 70.1 62 67.7
Potri.016G052001 Populus trichocarpa HOM05D005524 ORTHO05D005392 6.8e-11 70.1 62 64.5
Duzib106G1083 Durio zibethinus HOM05D005524 ORTHO05D005392 8.9e-11 69.7 63 68.3
Eucgr.H02490 Eucalyptus grandis HOM05D005524 ORTHO05D005392 8.9e-11 69.7 62 67.7
CSS0022867 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.2e-10 69.3 62 66.1
Potri.009G063600 Populus trichocarpa HOM05D005524 ORTHO05D005392 1.2e-10 69.3 62 66.1
TWI73G1008 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 1.5e-10 68.9 62 66.1
Duzib093G2098 Durio zibethinus HOM05D005524 ORTHO05D005392 2.0e-10 68.6 63 66.7
Sed0007200 Sechium edule HOM05D005524 ORTHO05D005392 2.0e-10 68.6 64 64.1
TWI09G0988 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 2.0e-10 68.6 62 66.1
Potri.001G268800 Populus trichocarpa HOM05D005524 ORTHO05D005392 2.6e-10 68.2 62 64.5
CsaV3_3G032220 Cucumis sativus L. HOM05D005524 ORTHO05D005392 3.4e-10 67.8 60 63.3
Sed0016248 Sechium edule HOM05D005524 ORTHO05D005392 3.4e-10 67.8 64 64.1
Atru.chr1.974 Acer truncatum HOM05D005524 ORTHO05D005392 4.4e-10 67.4 67 65.7
CSS0036301 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 4.4e-10 67.4 62 66.1
SHI24452 Sapria himalayana HOM05D005524 ORTHO05D005392 5.8e-10 67.0 57 68.4
Sed0003541 Sechium edule HOM05D005524 ORTHO05D005392 5.8e-10 67.0 64 64.1
ClCG09G004270 Citrullus lanatus HOM05D005524 ORTHO05D005392 7.5e-10 66.6 64 60.9
Atru.chr1.1006 Acer truncatum HOM05D005524 ORTHO05D005392 1.3e-09 65.9 67 64.2
Duzib128G1940 Durio zibethinus HOM05D005524 ORTHO05D005392 1.3e-09 65.9 65 61.5
Sabra16G0164700 Salix brachista HOM05D005524 ORTHO05D005392 2.2e-09 65.1 62 62.9
Sed0014034 Sechium edule HOM05D005524 ORTHO05D005392 2.2e-09 65.1 64 62.5
Eucgr.A02403 Eucalyptus grandis HOM05D005524 ORTHO05D005392 3.7e-09 64.3 62 59.7
Haze_03228 Corylus avellana HOM05D000430 ORTHO05D000305 4.9e-09 63.9 67 62.7
Thecc.05G164300 Theobroma cacao HOM05D005524 ORTHO05D005392 4.9e-09 63.9 64 65.6
Cc02_g27760 Coffea canephora HOM05D005524 ORTHO05D005392 6.4e-09 63.5 62 61.3
CSS0030443 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 8.3e-09 63.2 62 58.1
Dinv18091 Davidia involucrata HOM05D005524 ORTHO05D005392 8.3e-09 63.2 62 58.1
Sed0023384 Sechium edule HOM05D005524 ORTHO05D005392 1.4e-08 62.4 53 71.7
Hma1.2p1_0293F.1_g116270 Hydrangea macrophylla HOM05D005524 ORTHO05D005392 1.9e-08 62.0 67 58.2
A05p02620 Brassica napus HOM05D000031 ORTHO05D001033 3.2e-08 61.2 48 83.3
BolC4t21953H Brassica oleracea HOM05D000031 ORTHO05D001033 3.2e-08 61.2 48 83.3
BraA05t19255Z Brassica rapa HOM05D000031 ORTHO05D001033 3.2e-08 61.2 48 83.3
Cc02_g27740 Coffea canephora HOM05D005524 ORTHO05D005392 4.1e-08 60.8 62 59.7
CSS0022323 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 7.1e-08 60.1 62 58.1
CANSAT80G2246 Cannabis sativa HOM05D005524 ORTHO05D005392 7.1e-08 60.1 64 64.1
C04p03120 Brassica napus HOM05D000031 ORTHO05D001033 9.2e-08 59.7 48 81.2
CiPaw.13G003600 Carya illinoinensis HOM05D005524 ORTHO05D005392 9.2e-08 59.7 65 60.0
Manes.07G004601 Manihot esculenta HOM05D005524 ORTHO05D005392 2.1e-07 58.5 63 57.1
CSS0036543 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 2.7e-07 58.2 62 56.5
PSO384G3061 Papaver somniferum HOM05D005524 ORTHO05D005392 2.7e-07 58.2 63 55.6
CSS0022662 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 3.5e-07 57.8 62 58.1
Phvul.001G137100 Phaseolus vulgaris HOM05D005524 ORTHO05D005392 7.8e-07 56.6 59 54.2
Gorai.007G358400 Gossypium raimondii HOM05D008862 ORTHO05D005392 1.0e-06 56.2 67 56.7
Prupe.2G010700 Prunus persica HOM05D005524 ORTHO05D005392 1.3e-06 55.8 70 57.1
MBI04_g13621_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.7e-06 55.5 64 53.1
MBI04_g13622_MAGBIO Magnolia biondii HOM05D005524 ORTHO05D005392 1.7e-06 55.5 61 55.7
Gohir.D11G327300 Gossypium hirsutum HOM05D008862 ORTHO05D005392 2.3e-06 55.1 79 53.2
Sed0021947 Sechium edule HOM05D005524 ORTHO05D005392 2.3e-06 55.1 51 68.6
Lalb_Chr19g0132101 Lupinus albus HOM05D005524 ORTHO05D005392 3.0e-06 54.7 60 55.0
MD02G1314100 Malus domestica HOM05D005524 ORTHO05D005392 3.0e-06 54.7 66 56.1
Gorai.007G358200 Gossypium raimondii HOM05D008862 ORTHO05D005392 3.9e-06 54.3 79 51.9
Lalb_Chr03g0033981 Lupinus albus HOM05D005524 ORTHO05D005392 3.9e-06 54.3 60 56.7
DCAR_029662 Daucus carota HOM05D005524 ORTHO05D005392 5.1e-06 53.9 67 56.7
MBI01_g27620_MAGBIO Magnolia biondii HOM05D005524 ORTHO05D005392 5.1e-06 53.9 64 56.2
Sed0003950 Sechium edule HOM05D005524 ORTHO05D005392 6.6e-06 53.5 64 50.0
MELO3C009064.2 Cucumis melo HOM05D019173 ORTHO05D005392 8.6e-06 53.1 63 50.8
Lalb_Chr01g0015271 Lupinus albus HOM05D005524 ORTHO05D005392 8.6e-06 53.1 60 60.0
Lalb_Chr12g0205751 Lupinus albus HOM05D005524 ORTHO05D005392 8.6e-06 53.1 63 58.7
Manes.10G145300 Manihot esculenta HOM05D005524 ORTHO05D005392 8.6e-06 53.1 65 56.9


User provided reference genes

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