Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 6.1e-110 401.4 295 100.0
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 6.1e-110 401.4 295 100.0
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 6.1e-110 401.4 295 100.0
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 1.8e-101 373.2 295 96.6
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 2.7e-97 359.4 295 94.9
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 5.1e-88 328.6 295 86.8
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 7.3e-87 324.7 300 90.3
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 8.1e-78 294.7 303 82.2
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.3e-75 287.3 298 80.2
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 1.9e-74 283.5 302 83.1
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 3.2e-74 282.7 303 79.9
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 4.0e-69 265.8 304 77.3
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 8.7e-56 221.5 298 70.1
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 3.0e-40 169.9 298 66.8
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 3.7e-38 162.9 312 61.5
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 2.2e-35 153.7 300 60.3
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 6.5e-35 152.1 304 60.5
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 1.1e-34 151.4 308 61.4
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 1.4e-34 151.0 302 59.6
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 1.9e-34 150.6 302 59.6
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 5.5e-34 149.1 305 52.5
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 5.5e-34 149.1 305 52.5
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 5.5e-34 149.1 311 59.8
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 2.7e-33 146.7 306 58.5
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 6.1e-33 145.6 299 50.5
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 2.6e-31 140.2 303 61.7
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 1.5e-28 131.0 292 53.4
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 2.6e-28 130.2 283 56.9
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 7.7e-28 128.6 284 56.0
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 7.7e-28 128.6 268 54.9
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 1.5e-26 124.4 295 54.2
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 1.9e-26 124.0 284 56.3
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 1.9e-26 124.0 266 61.3
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 7.2e-26 122.1 281 44.8
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 7.2e-26 122.1 272 54.8
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 1.2e-25 121.3 288 60.1
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 1.2e-25 121.3 285 57.5
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 1.2e-25 121.3 300 57.7
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 1.6e-25 120.9 289 53.6
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 1.6e-25 120.9 289 53.6
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 1.6e-25 120.9 283 56.2
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 1.6e-25 120.9 302 57.9
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 2.1e-25 120.6 282 47.2
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 2.1e-25 120.6 294 57.1
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 4.7e-25 119.4 276 56.9
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 6.1e-25 119.0 287 56.4
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 1.4e-24 117.9 278 55.8
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 2.3e-24 117.1 267 56.9
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.3e-24 117.1 279 55.6
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 3.9e-24 116.3 282 57.8
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 3.9e-24 116.3 269 57.6
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.5e-23 114.4 269 57.6
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.5e-23 114.4 272 57.0
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.0e-23 114.0 275 56.7
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 3.3e-23 113.2 275 56.4
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 3.3e-23 113.2 275 56.4
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 4.4e-23 112.8 268 57.1
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 4.4e-23 112.8 277 52.0
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 9.7e-23 111.7 290 55.9
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 9.7e-23 111.7 300 55.0
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 9.7e-23 111.7 285 55.8
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 9.7e-23 111.7 284 56.0
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 9.7e-23 111.7 276 56.2
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 9.7e-23 111.7 276 53.6
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 1.3e-22 111.3 293 53.9
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 1.7e-22 110.9 269 58.7
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 1.7e-22 110.9 302 50.0
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 3.7e-22 109.8 283 55.1
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 3.7e-22 109.8 275 58.9
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 3.7e-22 109.8 199 40.2
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 4.8e-22 109.4 272 55.9
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 4.8e-22 109.4 294 52.4
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 8.2e-22 108.6 294 52.4
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 8.2e-22 108.6 273 57.9
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 1.1e-21 108.2 295 55.3
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 1.8e-21 107.5 239 58.6
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 2.4e-21 107.1 292 53.4
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.4e-21 107.1 294 52.0
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.4e-21 107.1 292 53.4
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 2.4e-21 107.1 277 56.0
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 3.1e-21 106.7 287 54.4
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 4.1e-21 106.3 293 56.0
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 4.1e-21 106.3 280 56.4
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 4.1e-21 106.3 280 55.4
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 7.0e-21 105.5 281 53.4
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 7.0e-21 105.5 285 54.4
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 9.1e-21 105.1 286 51.0
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 1.6e-20 104.4 206 41.7
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 1.6e-20 104.4 268 57.1
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 1.6e-20 104.4 198 42.9
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 2.0e-20 104.0 279 55.2
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 2.6e-20 103.6 286 53.8
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 3.5e-20 103.2 281 55.5
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 3.5e-20 103.2 258 55.8
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 7.7e-20 102.1 266 53.0
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 1.0e-19 101.7 276 52.2
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 1.0e-19 101.7 218 41.7
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 1.0e-19 101.7 265 56.2
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 1.7e-19 100.9 279 53.8
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 2.2e-19 100.5 294 54.4
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 2.9e-19 100.1 284 54.9
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 3.8e-19 99.8 274 43.4
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 5.0e-19 99.4 196 41.8
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 5.0e-19 99.4 306 49.3
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 6.5e-19 99.0 256 56.2
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 8.5e-19 98.6 289 51.2
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 8.5e-19 98.6 297 49.8
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 1.1e-18 98.2 293 50.5
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 1.1e-18 98.2 191 42.9
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 9.4e-18 95.1 232 60.3
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 9.4e-18 95.1 274 52.9
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 9.4e-18 95.1 291 51.9
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 1.2e-17 94.7 283 50.2
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 2.1e-17 94.0 303 49.8
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 4.7e-17 92.8 294 50.3
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 4.7e-17 92.8 296 53.0
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 8.0e-17 92.0 268 51.9
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 1.0e-16 91.7 285 54.4
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.0e-16 91.7 284 49.3
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 1.4e-16 91.3 221 35.7
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 2.3e-16 90.5 278 44.2
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 5.2e-16 89.4 157 42.0
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 8.8e-16 88.6 291 49.1
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 2.0e-15 87.4 207 39.1
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 2.0e-15 87.4 297 53.2
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 2.0e-15 87.4 274 51.5
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 2.6e-15 87.0 184 38.6
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 3.4e-15 86.7 198 37.4
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 5.7e-15 85.9 231 34.6
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 9.7e-15 85.1 278 51.8
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 2.2e-14 84.0 304 49.0
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 8.3e-14 82.0 276 52.2
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 1.1e-13 81.6 249 57.4
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 1.1e-13 81.6 260 56.5
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 1.4e-13 81.3 215 37.7
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 2.4e-13 80.5 279 49.5
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 4.1e-13 79.7 265 38.1
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 5.3e-13 79.3 158 39.9
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 5.3e-13 79.3 276 50.7
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 9.1e-13 78.6 313 49.5
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 9.1e-13 78.6 257 52.9
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 1.6e-12 77.8 274 51.1
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 2.0e-12 77.4 180 36.1
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 1.3e-11 74.7 141 39.7
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 3.8e-11 73.2 198 60.1
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 8.5e-11 72.0 204 35.8
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.9e-10 70.9 162 70.4
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.9e-10 70.9 289 49.1
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 2.5e-10 70.5 206 35.0
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 3.2e-10 70.1 209 37.3
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 4.2e-10 69.7 262 42.0
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 4.7e-09 66.2 261 47.9
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 1.4e-08 64.7 139 38.1
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 2.3e-08 63.9 227 37.4
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 3.0e-08 63.5 270 26.7
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 1.7e-06 57.8 295 47.8
AUR62024421 Chenopodium quinoa HOM05D004060 ORTHO05D004967 6.3e-06 55.8 72 51.4
AUR62026012 Chenopodium quinoa HOM05D004060 ORTHO05D004967 6.3e-06 55.8 72 51.4
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 8.3e-06 55.5 40 65.0
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 8.3e-06 55.5 118 40.7
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 8.3e-06 55.5 315 45.7


User provided reference genes

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