Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p32480 Brassica napus HOM05D005891 ORTHO05D007214 0.0e+00 1589.3 816 100.0
BolC8t50864H Brassica oleracea HOM05D005891 ORTHO05D007214 0.0e+00 1315.8 678 98.2
BcaC07g40040 Brassica carinata HOM05D005891 ORTHO05D007214 0.0e+00 1262.7 640 99.8
A09p50110 Brassica napus HOM05D005891 ORTHO05D007214 0.0e+00 1256.1 680 93.8
BraA09t40462Z Brassica rapa HOM05D005891 ORTHO05D007214 0.0e+00 1256.1 680 93.8
BcaC07g40068 Brassica carinata HOM05D005891 ORTHO05D007214 0.0e+00 1146.7 682 87.1
AL5G38660 Arabidopsis lyrata HOM05D005891 ORTHO05D007214 1.1e-310 1069.7 698 78.2
Aa31LG10G12080 Aethionema arabicum HOM05D005891 ORTHO05D007214 1.8e-260 902.9 662 71.0
Thhalv10005871m.g Eutrema salsugineum HOM05D005891 ORTHO05D007214 4.0e-260 901.7 533 86.1
Sp5g05400 Schrenkiella parvula HOM05D005891 ORTHO05D007214 1.1e-254 883.6 539 84.2
CARHR119890 Cardamine hirsuta HOM05D005891 ORTHO05D007214 3.6e-245 852.0 529 82.4
AT3G57170 Arabidopsis thaliana HOM05D005891 ORTHO05D007214 1.1e-241 840.5 528 82.0
Carub.0005s2399 Capsella rubella HOM05D005891 ORTHO05D007214 1.4e-241 840.1 525 81.7
THA.LOC104824423 Tarenaya hassleriana HOM05D005891 ORTHO05D007214 6.9e-236 821.2 700 61.6
Thecc.04G215900 Theobroma cacao HOM05D005891 ORTHO05D007214 1.9e-193 680.2 713 51.5
Manes.09G010000 Manihot esculenta HOM05D005891 ORTHO05D007214 1.4e-191 674.1 726 50.8
Gorai.006G219000 Gossypium raimondii HOM05D005891 ORTHO05D007214 5.7e-190 668.7 732 49.6
FvH4_6g24900 Fragaria vesca HOM05D005891 ORTHO05D007214 2.8e-189 666.4 704 51.6
Haze_19761 Corylus avellana HOM05D005891 ORTHO05D007214 3.7e-189 666.0 719 49.5
Atru.chr11.2650 Acer truncatum HOM05D005891 ORTHO05D007214 5.3e-188 662.1 742 49.7
FAN14G5310 Fragaria x ananassa HOM05D005891 ORTHO05D007214 5.3e-188 662.1 706 51.1
FAN05G1661 Fragaria x ananassa HOM05D005891 ORTHO05D007214 9.1e-188 661.4 706 51.0
RcHm_v2.0_Chr2g0124601 Rosa chinensis HOM05D005891 ORTHO05D007214 2.7e-187 659.8 703 51.1
CANSAT80G2643 Cannabis sativa HOM05D005891 ORTHO05D007214 4.5e-187 659.1 709 49.8
TWI53G1500 Tripterygium wilfordii HOM05D005891 ORTHO05D007214 5.9e-187 658.7 719 49.1
Gohir.A09G201700 Gossypium hirsutum HOM05D005891 ORTHO05D007214 7.7e-187 658.3 732 49.0
Prupe.4G274500 Prunus persica HOM05D005891 ORTHO05D007214 2.2e-186 656.8 700 50.1
QL07p004892 Quercus lobata HOM05D005891 ORTHO05D007214 6.5e-186 655.2 747 48.1
Duzib212G0478 Durio zibethinus HOM05D005891 ORTHO05D007214 1.2e-184 651.0 717 48.3
COL.COLO4_20863 Corchorus olitorius HOM05D005891 ORTHO05D007214 2.7e-184 649.8 704 50.0
Potri.006G044500 Populus trichocarpa HOM05D005891 ORTHO05D007214 5.2e-183 645.6 721 49.1
MD12G1089200 Malus domestica HOM05D005891 ORTHO05D007214 2.0e-182 643.7 697 50.5
MD14G1081800 Malus domestica HOM05D005891 ORTHO05D007214 7.5e-182 641.7 695 50.1
CiPaw.09G043200 Carya illinoinensis HOM05D005891 ORTHO05D007214 2.8e-181 639.8 710 48.0
TAR633G2073 Trochodendron aralioides HOM05D005891 ORTHO05D007214 9.1e-180 634.8 710 47.9
CANSAT80G2523 Cannabis sativa HOM05D005891 ORTHO05D007214 2.7e-179 633.3 708 49.4
Sabra06G0030700 Salix brachista HOM05D005891 ORTHO05D007214 3.0e-175 619.8 690 49.4
Lj1g0021626 Lotus japonicus HOM05D005891 ORTHO05D007214 4.9e-173 612.5 719 46.9
Actinidia39186 Actinidia chinensis HOM05D005891 ORTHO05D007214 3.1e-172 609.8 727 46.4
Glyma.03G131800 Glycine max HOM05D005891 ORTHO05D007214 2.0e-171 607.1 722 47.2
Dinv14832 Davidia involucrata HOM05D005891 ORTHO05D007214 5.9e-171 605.5 656 49.4
Ca_08420_v3 Cicer arietinum L. HOM05D005891 ORTHO05D007214 7.8e-171 605.1 717 47.1
Nitab4.5_0008674g0030 Nicotiana tabacum HOM05D005891 ORTHO05D007214 1.0e-170 604.7 717 46.0
Medtr7g090600 Medicago truncatula HOM05D005891 ORTHO05D007214 1.7e-170 604.0 719 46.6
Glyma.18G212600 Glycine max HOM05D005891 ORTHO05D007214 2.3e-170 603.6 722 46.8
TPR.G32752 Trifolium pratense HOM05D005891 ORTHO05D007214 8.6e-170 601.7 719 45.6
Lalb_Chr20g0110281 Lupinus albus HOM05D005891 ORTHO05D007214 1.9e-169 600.5 716 46.6
Nitab4.5_0001618g0090 Nicotiana tabacum HOM05D005891 ORTHO05D007214 1.9e-169 600.5 719 45.9
Duzib151G0628 Durio zibethinus HOM05D005891 ORTHO05D007214 2.5e-169 600.1 705 47.9
Solyc04g017700.4 Solanum lycopersicum HOM05D005891 ORTHO05D007214 5.6e-169 599.0 714 46.2
Aqoxy7G02967 Aquilegia oxysepala HOM05D005891 ORTHO05D007214 1.2e-168 597.8 722 47.2
Phvul.001G127800 Phaseolus vulgaris HOM05D005891 ORTHO05D007214 1.2e-168 597.8 720 46.9
Rhsim03G0031400 Rhododendron simsii HOM05D005891 ORTHO05D007214 1.6e-168 597.4 712 47.1
PGR031G3404 Punica granatum HOM05D005891 ORTHO05D007214 4.7e-168 595.9 713 46.0
ClCG04G004100 Citrullus lanatus HOM05D005891 ORTHO05D007214 8.3e-165 585.1 725 46.6
Nn7g36464 Nelumbo nucifera HOM05D005891 ORTHO05D007214 7.0e-164 582.0 722 44.7
Ciclev10025261m.g Citrus clementina HOM05D005891 ORTHO05D007214 3.9e-162 576.2 536 55.8
GSVIVG01033562001 Vitis vinifera HOM05D005891 ORTHO05D007214 5.0e-162 575.9 694 46.0
Sed0000553 Sechium edule HOM05D005891 ORTHO05D007214 8.6e-162 575.1 706 46.0
Ciclev10031083m.g Citrus clementina HOM05D005891 ORTHO05D007214 1.4e-159 567.8 530 55.1
Cfa016743 Carpinus fangiana HOM05D005891 ORTHO05D007214 6.8e-159 565.5 532 53.2
CAN.G1237.25 Capsicum annuum HOM05D005891 ORTHO05D007214 3.4e-158 563.1 676 45.9
PSO063G0854 Papaver somniferum HOM05D005891 ORTHO05D007214 1.7e-157 560.8 727 45.0
Hma1.2p1_0275F.1_g110840 Hydrangea macrophylla HOM05D005891 ORTHO05D007214 3.7e-157 559.7 646 46.4
PSO170G1429 Papaver somniferum HOM05D005891 ORTHO05D007214 1.4e-156 557.8 725 45.2
CsaV3_4G022060 Cucumis sativus L. HOM05D005891 ORTHO05D007214 3.2e-156 556.6 723 45.6
Oeu015292.1 Olea europaea HOM05D005891 ORTHO05D007214 6.0e-155 552.4 652 45.6
Sopen04g008780 Solanum pennellii HOM05D005891 ORTHO05D007214 6.0e-155 552.4 644 46.7
Sc19g0008430 Simmondsia chinensis HOM05D005891 ORTHO05D007214 1.0e-154 551.6 705 44.0
PGSC0003DMG402007625 Solanum tuberosum HOM05D005891 ORTHO05D007214 1.0e-154 551.6 644 46.6
Nn2g15043 Nelumbo nucifera HOM05D005891 ORTHO05D007214 1.9e-153 547.4 721 43.1
EL10Ac3g07174 Beta vulgaris HOM05D005891 ORTHO05D007214 9.5e-153 545.0 721 42.6
Ah.13g076700 Amaranthus hybridus HOM05D005891 ORTHO05D007214 2.1e-152 543.9 722 42.8
Gohir.D09G195600 Gossypium hirsutum HOM05D005891 ORTHO05D007214 2.8e-152 543.5 546 52.9
Cc06_g18470 Coffea canephora HOM05D005891 ORTHO05D007214 2.0e-150 537.3 728 41.8
ATR0580G208 Amborella trichopoda HOM05D005891 ORTHO05D007214 6.4e-149 532.3 736 44.2
Peaxi162Scf00130g01129 Petunia axillaris HOM05D005891 ORTHO05D007214 7.1e-148 528.9 716 43.2
Psat3g075960 Pisum sativum HOM05D005891 ORTHO05D007214 1.3e-146 524.6 534 51.7
Lsat_1_v5_gn_3_23040 Lactuca sativa HOM05D005891 ORTHO05D007214 3.9e-146 523.1 701 42.8
HanXRQChr17g0536551 Helianthus annuus HOM05D005891 ORTHO05D007214 5.1e-146 522.7 732 40.6
arahy.Tifrunner.gnm1.ann1.68N1MV Arachis hypogaea HOM05D005891 ORTHO05D007214 8.6e-146 521.9 777 42.0
Hund19119 Selenicereus undatus HOM05D005891 ORTHO05D007214 1.5e-145 521.2 765 39.5
arahy.Tifrunner.gnm1.ann1.324ZN3 Arachis hypogaea HOM05D005891 ORTHO05D007214 7.3e-145 518.8 778 41.5
Migut.K00113 Erythranthe guttata HOM05D005891 ORTHO05D007214 1.6e-144 517.7 712 42.4
MBI16_g31793_MAGBIO Magnolia biondii HOM05D005891 ORTHO05D007214 8.9e-143 511.9 681 42.6
MELO3C014212.2 Cucumis melo HOM05D005891 ORTHO05D007214 2.6e-142 510.4 656 45.4
AUR62026144 Chenopodium quinoa HOM05D005891 ORTHO05D007214 1.1e-140 505.0 680 43.8
AUR62030390 Chenopodium quinoa HOM05D005891 ORTHO05D007214 2.4e-140 503.8 678 43.2
DCAR_002883 Daucus carota HOM05D005891 ORTHO05D007214 1.6e-139 501.1 563 47.6
SalBow4G2335 Salvia bowleyana HOM05D005891 ORTHO05D007214 4.6e-139 499.6 725 39.2
Eucgr.A02290 Eucalyptus grandis HOM05D005891 ORTHO05D007214 1.6e-136 491.1 533 50.5
SalBow1G2481 Salvia bowleyana HOM05D005891 ORTHO05D007214 9.0e-135 485.3 736 39.8
ECA246G3700 Erigeron canadensis HOM05D005891 ORTHO05D007214 4.2e-132 476.5 581 44.9
CDE08G1332 Ceratophyllum demersum HOM05D005891 ORTHO05D007214 4.5e-126 456.4 656 40.9
Zm00001eb364590 Zea mays HOM05D005891 ORTHO05D007214 7.1e-124 449.1 742 36.1
FAN02G2450 Fragaria x ananassa HOM05D005891 ORTHO05D007214 1.6e-123 448.0 495 50.1
HPP92_010949 Vanilla planifolia HOM05D005891 ORTHO05D007214 2.7e-123 447.2 717 39.3
SGA_v2.0_scaffold94G28504 Striga asiatica HOM05D005891 ORTHO05D007214 7.9e-115 419.1 720 37.6
VMungo1383G0485 Vigna mungo HOM05D005891 ORTHO05D007214 2.2e-109 401.0 368 56.8
Lj5A499T12 Lonicera japonica HOM05D005891 ORTHO05D007214 1.0e-106 392.1 426 47.9
SEGI_09087 Sequoiadendron giganteum HOM05D005891 ORTHO05D007214 1.3e-104 385.2 565 39.5
vmacro21952 Vaccinium macrocarpon HOM05D005891 ORTHO05D007214 4.1e-95 353.6 455 44.2
MD07G1151600 Malus domestica HOM05D005891 ORTHO05D007214 7.9e-91 339.3 493 41.6
unitig_748.g7229 Utricularia gibba HOM05D005891 ORTHO05D007214 2.3e-90 337.8 689 33.8
Actinidia09292 Actinidia chinensis HOM05D005891 ORTHO05D007214 8.2e-88 329.3 736 31.8
Pp3c24_1230 Physcomitrium patens HOM05D005891 ORTHO05D007214 2.6e-78 297.7 716 30.9
AagrBONN_evm.TU.Sc2ySwM_117.2192 Anthoceros agrestis HOM05D005891 ORTHO05D007214 1.7e-77 295.0 733 32.5
vmacro20338 Vaccinium macrocarpon HOM05D005891 ORTHO05D007214 1.0e-74 285.8 760 30.1
Mapoly0019s0088 Marchantia polymorpha HOM05D005891 ORTHO05D007214 6.7e-74 283.1 602 34.9
SMO367G0314 Selaginella moellendorffii HOM05D005891 ORTHO05D007214 2.2e-69 268.1 506 36.4
Prupe.5G000500 Prunus persica HOM05D005891 ORTHO05D007214 3.4e-65 254.2 229 58.1
BolC8t50863H Brassica oleracea HOM05D005891 ORTHO05D006434 2.4e-55 221.5 141 89.4
FAN05G3805 Fragaria x ananassa HOM05D005891 ORTHO05D007214 7.3e-52 209.9 197 54.3
Ciclev10013765m.g Citrus clementina HOM05D005891 ORTHO05D007214 1.2e-49 202.6 239 50.2
Cpa.g.sc66.74 Carica papaya HOM05D005891 ORTHO05D007214 7.5e-49 199.9 147 65.3
Os05g0290300 Oryza sativa ssp. japonica HOM05D005891 ORTHO05D007214 1.9e-44 185.3 207 47.8
CBR_g4216 Chara braunii HOM05D000019 ORTHO05D000048 9.5e-44 183.0 268 39.2
C04p35350 Brassica napus HOM05D005891 ORTHO05D032421 1.6e-35 155.6 253 45.1
BolC4t25089H Brassica oleracea HOM05D005891 ORTHO05D032421 1.6e-35 155.6 253 45.1
VMungo1383G2003 Vigna mungo HOM05D005891 ORTHO05D007214 1.3e-32 146.0 280 35.4
MD07G1151500 Malus domestica HOM05D005891 ORTHO05D007214 2.9e-32 144.8 230 41.7
Lj5C499G2 Lonicera japonica HOM05D005891 ORTHO05D007214 6.6e-29 133.7 203 40.9
QL07p005099 Quercus lobata HOM05D005891 ORTHO05D007214 8.6e-29 133.3 139 52.5
BcaB05g24338 Brassica carinata HOM05D005891 ORTHO05D007214 2.9e-24 118.2 69 84.1
Cfa022822 Carpinus fangiana HOM05D005891 ORTHO05D007214 4.2e-23 114.4 279 29.0
BcaC02g09903 Brassica carinata HOM05D005891 ORTHO05D032421 3.5e-22 111.3 91 67.0
TWI74G1459 Tripterygium wilfordii HOM05D005891 ORTHO05D007214 1.8e-18 99.0 146 37.7
FAN02G2483 Fragaria x ananassa HOM05D005891 ORTHO05D007214 3.8e-16 91.3 92 48.9
Glyma.19G133702 Glycine max HOM05D005891 ORTHO05D007214 9.3e-15 86.7 195 32.3
CSS0027694 Camellia sinensis var. sinensis HOM05D005891 ORTHO05D007214 1.3e-13 82.8 94 43.6
Cpa.g.sc66.72 Carica papaya HOM05D005891 ORTHO05D007214 1.3e-11 76.3 92 48.9
Actinidia39189 Actinidia chinensis HOM05D005891 ORTHO05D007214 2.4e-10 72.0 95 38.9
Sed0015576 Sechium edule HOM05D006534 ORTHO05D006434 8.4e-08 63.5 39 69.2
Glyma.11G002000 Glycine max HOM05D006534 ORTHO05D006434 2.1e-06 58.9 39 64.1
Potri.009G086900 Populus trichocarpa HOM05D006534 ORTHO05D006434 2.1e-06 58.9 39 66.7
TPR.G21131 Trifolium pratense HOM05D006534 ORTHO05D006434 6.0e-06 57.4 41 68.3


User provided reference genes

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