Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 2.4e-199 698.7 378 100.0
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 1.2e-198 696.4 378 99.5
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 7.8e-134 481.1 357 73.7
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 6.0e-126 454.9 485 55.1
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 2.3e-125 453.0 502 52.8
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 8.7e-125 451.1 497 53.5
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 1.1e-124 450.7 499 53.7
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 7.3e-124 448.0 496 53.6
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 9.6e-124 447.6 497 53.5
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 8.1e-123 444.5 496 53.4
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 1.8e-122 443.4 497 53.3
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 6.9e-122 441.4 504 51.4
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 6.9e-122 441.4 492 54.3
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 9.0e-122 441.0 497 53.1
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 2.3e-117 426.4 500 52.0
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 5.3e-114 415.2 501 49.9
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 6.4e-112 408.3 471 50.1
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 2.2e-96 356.7 508 43.5
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 2.2e-96 356.7 508 43.5
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 9.3e-95 351.3 488 43.6
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.2e-94 350.9 509 43.0
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 4.6e-94 349.0 506 42.3
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 7.9e-94 348.2 505 41.8
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 7.9e-94 348.2 500 42.6
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 1.0e-93 347.8 509 41.7
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 1.1e-92 344.4 501 42.1
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 3.3e-92 342.8 506 41.9
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 4.3e-92 342.4 507 41.8
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 7.4e-92 341.7 499 42.5
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 1.6e-91 340.5 505 42.0
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 1.6e-91 340.5 503 42.1
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 4.8e-91 339.0 505 42.0
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 8.2e-91 338.2 503 41.9
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 1.1e-90 337.8 504 42.5
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.4e-90 337.4 469 43.5
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 3.1e-90 336.3 503 41.9
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 4.1e-90 335.9 499 41.7
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 4.1e-90 335.9 504 40.7
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 5.3e-90 335.5 504 41.1
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 5.3e-90 335.5 500 41.0
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 6.9e-90 335.1 503 41.4
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 1.2e-89 334.3 398 50.8
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 1.5e-89 334.0 505 40.0
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 2.6e-89 333.2 501 42.3
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 4.5e-89 332.4 502 42.6
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 5.9e-89 332.0 508 40.9
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 5.9e-89 332.0 499 41.5
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 1.7e-88 330.5 500 41.6
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 3.8e-88 329.3 504 40.5
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 5.0e-88 328.9 508 40.7
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 1.9e-87 327.0 500 41.2
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 3.2e-87 326.2 503 40.2
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 4.2e-87 325.9 504 39.3
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 5.5e-87 325.5 503 40.6
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 5.5e-87 325.5 502 41.2
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 7.2e-87 325.1 503 41.6
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 9.4e-87 324.7 499 41.3
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 1.2e-86 324.3 505 39.8
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 2.1e-86 323.6 501 39.9
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 3.6e-86 322.8 497 41.4
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 4.6e-86 322.4 500 41.0
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 4.6e-86 322.4 501 41.1
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 1.4e-85 320.9 497 40.6
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 2.3e-85 320.1 500 39.2
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 2.3e-85 320.1 504 40.1
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 5.1e-85 318.9 500 40.0
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 8.8e-85 318.2 491 40.9
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 2.2e-83 313.5 497 39.4
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 2.2e-83 313.5 503 39.4
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 6.3e-83 312.0 499 39.5
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 4.1e-82 309.3 310 57.4
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 5.3e-82 308.9 507 40.2
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 2.0e-81 307.0 501 37.7
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 2.6e-81 306.6 502 39.6
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 1.3e-80 304.3 500 38.8
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 2.2e-80 303.5 484 40.5
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 6.5e-80 302.0 478 40.0
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 8.5e-80 301.6 478 39.3
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.4e-79 300.8 478 40.0
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 1.4e-79 300.8 499 39.3
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 1.9e-79 300.4 499 38.5
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.5e-79 300.1 478 39.3
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.5e-79 300.1 478 39.3
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 4.2e-79 299.3 475 38.3
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 9.4e-79 298.1 448 40.8
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 1.6e-78 297.4 474 39.2
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 1.6e-78 297.4 499 38.9
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 1.6e-78 297.4 499 38.9
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 2.7e-78 296.6 469 39.9
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 7.9e-78 295.0 491 38.5
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 3.0e-77 293.1 508 39.0
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 3.0e-77 293.1 503 37.6
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.2e-77 292.4 479 39.0
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 5.2e-77 292.4 487 38.2
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 8.8e-77 291.6 493 38.9
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 8.8e-77 291.6 487 39.0
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 2.0e-76 290.4 488 37.7
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 7.7e-73 278.5 497 37.2
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 2.9e-72 276.6 508 35.0
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 6.5e-72 275.4 431 40.4
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 4.2e-71 272.7 473 37.6
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 2.1e-70 270.4 492 36.8
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.0e-69 268.1 481 36.6
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 2.3e-69 266.9 490 36.7
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 1.5e-63 247.7 414 38.9
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 3.0e-61 240.0 386 38.6
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 2.6e-60 236.9 476 35.3
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 1.3e-59 234.6 388 36.6
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 2.8e-59 233.4 477 35.4
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 4.1e-58 229.6 306 44.8
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 4.7e-54 216.1 384 35.7
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 7.0e-50 202.2 307 39.4
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 7.0e-50 202.2 348 37.6
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 7.8e-49 198.7 117 91.5
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 1.3e-48 198.0 470 31.5
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.4e-45 188.0 291 40.9
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 1.2e-44 184.9 302 38.4
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 1.1e-39 168.3 494 27.7
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 9.5e-39 165.2 322 35.7
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 9.5e-39 165.2 570 26.7
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 1.1e-34 151.8 483 27.3
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 5.4e-34 149.4 225 44.4
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 1.0e-32 145.2 77 97.4
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 2.0e-28 131.0 514 26.7
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 8.3e-27 125.6 245 35.1
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 1.2e-25 121.7 218 32.6
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 2.1e-25 120.9 471 25.5
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 3.5e-25 120.2 304 32.2
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 6.0e-25 119.4 277 32.9
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 1.7e-24 117.9 113 58.4
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 3.9e-24 116.7 198 38.9
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 2.8e-22 110.5 123 49.6
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 8.1e-22 109.0 115 53.9
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 1.9e-18 97.8 73 68.5
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 5.4e-18 96.3 112 50.9
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.1e-15 88.6 105 48.6
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 4.4e-12 76.6 120 44.2
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.8e-12 76.3 104 45.2
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 2.9e-11 73.9 78 53.8
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 2.9e-11 73.9 97 46.4
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 1.0e-08 65.5 148 33.8
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 8.7e-08 62.4 106 35.8
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 9.6e-07 58.9 115 29.6


User provided reference genes

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