Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p32390 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 2588.1 1366 100.0
A09p49980 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 2480.7 1339 98.0
BraA09t40448Z Brassica rapa HOM05D004602 ORTHO05D005906 0.0e+00 2480.7 1339 98.0
BolC8t50853H Brassica oleracea HOM05D004602 ORTHO05D005906 0.0e+00 2456.0 1315 98.7
BolC4t25093H Brassica oleracea HOM05D004602 ORTHO05D005906 0.0e+00 2372.8 1327 94.1
BcaC02g09900 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 2371.3 1327 94.0
C04p35390 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 2371.3 1327 94.0
BraA04t16055Z Brassica rapa HOM05D004602 ORTHO05D005906 0.0e+00 2365.9 1327 94.0
A04p03790 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 2350.9 1327 93.7
BcaC07g40050 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 2322.4 1395 89.7
Thhalv10005748m.g Eutrema salsugineum HOM05D004602 ORTHO05D005906 0.0e+00 2322.0 1313 93.5
Sp5g05520 Schrenkiella parvula HOM05D004602 ORTHO05D005906 0.0e+00 2316.2 1269 94.8
CARHR167250 Cardamine hirsuta HOM05D004602 ORTHO05D005906 0.0e+00 2285.8 1317 92.0
BcaC07g40081 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 2280.0 1308 93.0
AT3G57060 Arabidopsis thaliana HOM05D004602 ORTHO05D005906 0.0e+00 2279.2 1313 91.0
Carub.0005s2386 Capsella rubella HOM05D004602 ORTHO05D005906 0.0e+00 2272.3 1315 90.9
Aa31LG10G11980 Aethionema arabicum HOM05D004602 ORTHO05D005906 0.0e+00 2127.1 1396 81.9
THA.LOC104824412 Tarenaya hassleriana HOM05D004602 ORTHO05D005906 0.0e+00 2061.2 1265 84.4
AL5G38540 Arabidopsis lyrata HOM05D004602 ORTHO05D005906 0.0e+00 2008.0 1178 90.6
Thecc.05G139800 Theobroma cacao HOM05D004602 ORTHO05D005906 0.0e+00 1834.3 1289 74.5
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 0.0e+00 1833.9 1321 71.9
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 0.0e+00 1830.1 1266 74.1
CSS0013313 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 0.0e+00 1823.5 1277 73.8
Ciclev10018515m.g Citrus clementina HOM05D004602 ORTHO05D005906 0.0e+00 1813.5 1264 73.3
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1812.0 1271 73.3
Potri.006G041500 Populus trichocarpa HOM05D004602 ORTHO05D005906 0.0e+00 1808.9 1288 73.9
Cpa.g.sc5.207 Carica papaya HOM05D004602 ORTHO05D005906 0.0e+00 1808.1 1282 73.2
Gohir.A11G308300 Gossypium hirsutum HOM05D004602 ORTHO05D005906 0.0e+00 1808.1 1275 73.7
Gorai.007G353800 Gossypium raimondii HOM05D004602 ORTHO05D005906 0.0e+00 1807.7 1275 73.5
QL07p008767 Quercus lobata HOM05D004602 ORTHO05D005906 0.0e+00 1807.3 1297 72.3
Lj1A1104G73 Lonicera japonica HOM05D004602 ORTHO05D005906 0.0e+00 1804.3 1311 72.2
Duzib106G0250 Durio zibethinus HOM05D004602 ORTHO05D005906 0.0e+00 1794.2 1277 74.0
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1791.9 1268 72.6
vmacro09030 Vaccinium macrocarpon HOM05D004602 ORTHO05D005906 0.0e+00 1788.9 1309 70.9
Sabra06G0028200 Salix brachista HOM05D004602 ORTHO05D005906 0.0e+00 1787.7 1309 72.0
TWI53G0771 Tripterygium wilfordii HOM05D004602 ORTHO05D005906 0.0e+00 1785.8 1331 70.6
CSS0046388 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 0.0e+00 1784.2 1277 72.4
MD14G1099800 Malus domestica HOM05D004602 ORTHO05D005906 0.0e+00 1782.3 1285 72.2
FvH4_6g25220 Fragaria vesca HOM05D004602 ORTHO05D005906 0.0e+00 1771.1 1275 71.5
Eucgr.A02262 Eucalyptus grandis HOM05D004602 ORTHO05D005906 0.0e+00 1770.7 1279 72.0
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 0.0e+00 1770.7 1332 70.1
Cc06_g18890 Coffea canephora HOM05D004602 ORTHO05D005906 0.0e+00 1768.1 1295 70.0
FAN14G4483 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1756.9 1275 71.2
Haze_19715 Corylus avellana HOM05D004602 ORTHO05D005906 0.0e+00 1756.1 1211 74.4
ClCG10G016070 Citrullus lanatus HOM05D004602 ORTHO05D005906 0.0e+00 1755.0 1288 70.0
Nn2g14888 Nelumbo nucifera HOM05D004602 ORTHO05D005906 0.0e+00 1748.4 1305 70.6
FAN09G3373 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1746.1 1275 70.7
DCAR_016876 Daucus carota HOM05D004602 ORTHO05D005906 0.0e+00 1736.1 1283 69.9
PGR031G1006 Punica granatum HOM05D004602 ORTHO05D005906 0.0e+00 1733.4 1277 71.6
MELO3C009773.2 Cucumis melo HOM05D004602 ORTHO05D005906 0.0e+00 1731.8 1272 69.8
SGA_v2.0_scaffold105G30304 Striga asiatica HOM05D004602 ORTHO05D005906 0.0e+00 1731.8 1293 69.8
arahy.Tifrunner.gnm1.ann1.F5KNV4 Arachis hypogaea HOM05D004602 ORTHO05D005906 0.0e+00 1730.3 1283 69.8
MSTRG.19816 Avicennia marina HOM05D004602 ORTHO05D005906 0.0e+00 1727.6 1278 70.5
arahy.Tifrunner.gnm1.ann1.0AC10P Arachis hypogaea HOM05D004602 ORTHO05D005906 0.0e+00 1724.1 1283 69.6
CAN.G641.74 Capsicum annuum HOM05D004602 ORTHO05D005906 0.0e+00 1722.6 1304 69.1
COL.COLO4_37951 Corchorus olitorius HOM05D004602 ORTHO05D005906 0.0e+00 1721.8 1296 70.8
PGSC0003DMG400029835 Solanum tuberosum HOM05D004602 ORTHO05D005906 0.0e+00 1717.2 1280 69.7
BcaNung07305 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1711.8 1136 83.3
Sopen10g030360 Solanum pennellii HOM05D004602 ORTHO05D005906 0.0e+00 1710.7 1341 67.3
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 0.0e+00 1708.0 1273 71.1
Peaxi162Scf01378g00118 Petunia axillaris HOM05D004602 ORTHO05D005906 0.0e+00 1707.6 1346 67.5
Solyc10g079730.3 Solanum lycopersicum HOM05D004602 ORTHO05D005906 0.0e+00 1707.2 1279 69.5
Migut.J01674 Erythranthe guttata HOM05D004602 ORTHO05D005906 0.0e+00 1703.0 1267 70.3
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 0.0e+00 1703.0 1270 70.2
HanXRQChr06g0176911 Helianthus annuus HOM05D004602 ORTHO05D005906 0.0e+00 1701.4 1339 67.3
Lj5g0012838 Lotus japonicus HOM05D004602 ORTHO05D005906 0.0e+00 1701.0 1275 70.0
Lsat_1_v5_gn_8_82681 Lactuca sativa HOM05D004602 ORTHO05D005906 0.0e+00 1700.3 1250 69.9
EL10Ac3g07209 Beta vulgaris HOM05D004602 ORTHO05D005906 0.0e+00 1692.6 1308 67.1
TPR.G19659 Trifolium pratense HOM05D004602 ORTHO05D005906 0.0e+00 1689.5 1274 69.2
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 0.0e+00 1687.2 1273 69.9
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1683.3 1295 68.0
PSO384G2446 Papaver somniferum HOM05D004602 ORTHO05D005906 0.0e+00 1681.8 1268 68.8
PSO339G0660 Papaver somniferum HOM05D004602 ORTHO05D005906 0.0e+00 1679.5 1268 68.5
Sed0020412 Sechium edule HOM05D004602 ORTHO05D005906 0.0e+00 1677.1 1279 67.8
Atru.chr1.1489 Acer truncatum HOM05D004602 ORTHO05D005906 0.0e+00 1676.8 1293 69.8
CsaV3_3G040360 Cucumis sativus L. HOM05D004602 ORTHO05D005906 0.0e+00 1676.8 1287 67.1
Medtr1g051230 Medicago truncatula HOM05D004602 ORTHO05D005906 0.0e+00 1676.8 1283 69.1
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 0.0e+00 1675.2 1287 68.9
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 0.0e+00 1667.5 1269 68.5
Psat6g123240 Pisum sativum HOM05D004602 ORTHO05D005906 0.0e+00 1667.5 1309 67.5
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 0.0e+00 1659.0 1294 68.5
Hund24628 Selenicereus undatus HOM05D004602 ORTHO05D005906 0.0e+00 1656.0 1289 68.0
GSVIVG01033598001 Vitis vinifera HOM05D004602 ORTHO05D005906 0.0e+00 1636.7 1292 67.5
ECA236G3238 Erigeron canadensis HOM05D004602 ORTHO05D005906 0.0e+00 1630.9 1274 67.0
Rhsim04G0110600 Rhododendron simsii HOM05D004602 ORTHO05D005906 0.0e+00 1612.0 1463 60.6
Dinv08512 Davidia involucrata HOM05D004602 ORTHO05D005906 0.0e+00 1606.3 1094 76.0
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 0.0e+00 1597.8 1310 65.7
Nitab4.5_0001364g0050 Nicotiana tabacum HOM05D004602 ORTHO05D005906 0.0e+00 1597.0 1347 64.7
Nitab4.5_0000571g0090 Nicotiana tabacum HOM05D004602 ORTHO05D005906 0.0e+00 1585.9 1282 66.0
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 0.0e+00 1572.4 1275 64.9
AUR62030338 Chenopodium quinoa HOM05D004602 ORTHO05D005906 0.0e+00 1561.6 1282 65.0
unitig_21.g20921 Utricularia gibba HOM05D004602 ORTHO05D005906 0.0e+00 1557.3 1304 63.9
Gohir.D11G323700 Gossypium hirsutum HOM05D004602 ORTHO05D005906 0.0e+00 1528.8 1060 74.5
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 0.0e+00 1520.4 1306 61.9
Peaxi162Scf00970g00168 Petunia axillaris HOM05D004602 ORTHO05D005906 0.0e+00 1492.2 1275 63.5
Ah.04g151080 Amaranthus hybridus HOM05D004602 ORTHO05D005906 0.0e+00 1461.8 1122 67.7
CiPaw.09G045900 Carya illinoinensis HOM05D004602 ORTHO05D005906 0.0e+00 1450.6 1058 71.8
Zm00001eb329790 Zea mays HOM05D004602 ORTHO05D005906 0.0e+00 1434.9 1243 62.0
AUR62040826 Chenopodium quinoa HOM05D004602 ORTHO05D005906 0.0e+00 1434.1 1093 68.7
SEGI_37933 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 0.0e+00 1399.0 1372 55.6
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 0.0e+00 1361.7 1283 58.7
SHI28280 Sapria himalayana HOM05D004602 ORTHO05D005906 0.0e+00 1328.5 1075 66.1
FAN02G3171 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1159.1 830 71.6
Pp3c3_32300 Physcomitrium patens HOM05D004602 ORTHO05D005906 0.0e+00 1121.7 1317 47.5
Mapoly0022s0167 Marchantia polymorpha HOM05D004602 ORTHO05D005906 1.6e-309 1066.6 1345 44.7
AagrBONN_evm.TU.Sc2ySwM_362.2771 Anthoceros agrestis HOM05D004602 ORTHO05D005906 3.4e-304 1048.9 1317 46.5
SMO351G0392 Selaginella moellendorffii HOM05D004602 ORTHO05D005906 1.6e-301 1040.0 1238 47.3
Pp3c12_12160 Physcomitrium patens HOM05D004602 ORTHO05D005906 1.6e-298 1030.0 1265 45.5
CANSAT56G2079 Cannabis sativa HOM05D004602 ORTHO05D005906 6.0e-285 984.9 748 68.7
CBR_g63081 Chara braunii HOM05D004602 ORTHO05D005906 6.7e-252 875.2 1250 42.2
CiPaw.16G087800 Carya illinoinensis HOM05D004602 ORTHO05D005906 8.2e-242 841.6 802 59.1
MBI13_g01621_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.1e-173 614.4 613 57.1
MCO05G584 Micromonas commoda HOM05D004602 ORTHO05D005906 2.1e-168 597.8 1296 32.6
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 6.2e-165 586.3 1169 30.6
COL.COLO4_37953 Corchorus olitorius HOM05D004602 ORTHO05D005906 8.2e-157 559.3 516 61.2
CDE04G1839 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 7.5e-118 429.9 358 62.3
FvH4_6g26040 Fragaria vesca HOM05D004602 ORTHO05D005906 3.5e-107 394.4 350 63.1
Haze_26650 Corylus avellana HOM05D004602 ORTHO05D005906 1.5e-89 335.9 1088 25.9
Cfa024947 Carpinus fangiana HOM05D004602 ORTHO05D005906 5.2e-79 300.8 1104 24.1
Cre10.g432500 Chlamydomonas reinhardtii HOM05D004602 ORTHO05D005906 1.6e-64 252.7 1248 24.6
SalBow8G3517 Salvia bowleyana HOM05D004602 ORTHO05D005906 3.5e-59 235.0 285 49.8
SalBow8G5198 Salvia bowleyana HOM05D004602 ORTHO05D005906 3.5e-59 235.0 285 49.8
MBI15_g03986_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.9e-53 215.3 207 56.0
MBI13_g41158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 4.6e-51 208.0 214 53.7
SalBow8G5420 Salvia bowleyana HOM05D004602 ORTHO05D005906 1.3e-50 206.5 301 44.9
MBI13_g41314_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.5e-49 203.0 215 52.1
SEGI_14640 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 1.4e-47 196.4 222 44.6
SHI28279 Sapria himalayana HOM05D004602 ORTHO05D005906 3.1e-47 195.3 161 61.5
MBI06_g41970_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 5.8e-46 191.0 177 58.2
Lalb_Chr06g0173621 Lupinus albus HOM05D004602 ORTHO05D005906 2.5e-44 185.7 181 58.0
MBI08_g38609_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.3e-42 179.9 161 62.7
MBI08_g40283_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 5.1e-42 177.9 161 62.1
CDE04G0055 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 3.8e-37 161.8 138 65.2
MBI08_g39158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.5e-33 149.1 134 62.7
Hma1.2p1_0682F.1_g202500 Hydrangea macrophylla HOM05D004602 ORTHO05D005906 1.4e-28 133.3 101 66.3
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 2.7e-27 129.0 122 58.2
MBI15_g38850_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 6.1e-27 127.9 142 56.3
MBI13_g46003_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 6.3e-24 117.9 106 55.7
Lalb_Chr06g0173601 Lupinus albus HOM05D004602 ORTHO05D014120 4.5e-22 111.7 88 63.6
MBI05_g18177_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.2e-20 105.5 97 62.9
MBI05_g39343_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.2e-20 105.5 71 74.6
MBI11_g15185_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 9.4e-20 104.0 95 64.2
HanXRQChr05g0161121 Helianthus annuus HOM05D004602 ORTHO05D005906 1.2e-19 103.6 90 56.7
MELO3C008538.2 Cucumis melo HOM05D004602 ORTHO05D005906 2.7e-19 102.4 61 78.7
Psat7g124520 Pisum sativum HOM05D004602 ORTHO05D030491 1.5e-17 96.7 77 64.9
Psat7g124600 Pisum sativum HOM05D004602 ORTHO05D030491 1.5e-17 96.7 77 64.9
PGSC0003DMG400020858 Solanum tuberosum HOM05D004602 ORTHO05D005906 4.4e-17 95.1 108 50.9
FAN05G3456 Fragaria x ananassa HOM05D004602 ORTHO05D014120 1.3e-16 93.6 126 50.0
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 3.7e-16 92.0 67 65.7
MBI08_g05534_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.4e-15 89.4 64 70.3
Lalb_Chr06g0173611 Lupinus albus HOM05D004602 ORTHO05D005906 4.1e-15 88.6 57 78.9
MBI16_g48278_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 5.3e-15 88.2 68 64.7
Rhsim06G0100000 Rhododendron simsii HOM05D004602 ORTHO05D005906 2.0e-14 86.3 63 71.4
PGSC0003DMG400020862 Solanum tuberosum HOM05D004602 ORTHO05D005906 2.6e-14 85.9 96 52.1
MELO3C029978.2 Cucumis melo HOM05D004602 ORTHO05D000002 1.1e-12 80.5 61 67.2
PGSC0003DMG400004177 Solanum tuberosum HOM05D002370 ORTHO05D003878 1.3e-08 67.0 64 54.7
COL.COLO4_34262 Corchorus olitorius HOM05D004602 ORTHO05D014120 1.8e-07 63.2 62 61.3
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 1.2e-06 60.5 160 26.2
BcaB02g08331 Brassica carinata HOM05D004602 ORTHO05D014120 1.6e-06 60.1 71 50.7
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 1.6e-06 60.1 175 26.3
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 3.5e-06 58.9 129 27.9
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 5.9e-06 58.2 135 26.7
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 5.9e-06 58.2 135 26.7
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 7.7e-06 57.8 158 25.9


User provided reference genes

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