Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40003 Brassica carinata HOM05D005060 ORTHO05D005975 4.0e-62 241.5 144 100.0
C08p32160 Brassica napus HOM05D005060 ORTHO05D005975 4.0e-62 241.5 144 100.0
BolC8t50834H Brassica oleracea HOM05D005060 ORTHO05D005975 4.0e-62 241.5 144 100.0
A09p49780 Brassica napus HOM05D005060 ORTHO05D005975 3.7e-60 235.0 144 97.2
BraA09t40431Z Brassica rapa HOM05D005060 ORTHO05D005975 3.7e-60 235.0 144 97.2
A04p03610 Brassica napus HOM05D005060 ORTHO05D005975 7.5e-53 210.7 144 89.6
BcaC02g09878 Brassica carinata HOM05D005060 ORTHO05D005975 2.4e-51 205.7 147 88.4
C04p35630 Brassica napus HOM05D005060 ORTHO05D005975 2.4e-51 205.7 147 88.4
BolC4t25241H Brassica oleracea HOM05D005060 ORTHO05D005975 2.4e-51 205.7 147 88.4
Sp5g05680 Schrenkiella parvula HOM05D005060 ORTHO05D005975 2.3e-49 199.1 152 86.2
BcaC07g40108 Brassica carinata HOM05D005060 ORTHO05D005975 5.0e-49 198.0 144 86.1
BcaB02g08343 Brassica carinata HOM05D005060 ORTHO05D005975 2.1e-47 192.6 144 82.6
BraA07t29972Z Brassica rapa HOM05D000531 ORTHO05D001630 5.2e-46 188.0 148 82.4
A07p23120 Brassica napus HOM05D005060 ORTHO05D005975 7.5e-45 184.1 145 82.8
AT3G56910 Arabidopsis thaliana HOM05D005060 ORTHO05D005975 6.4e-44 181.0 151 78.8
CARHR167060 Cardamine hirsuta HOM05D005060 ORTHO05D005975 1.9e-43 179.5 152 78.9
BolC6t37551H Brassica oleracea HOM05D005060 ORTHO05D005975 9.2e-43 177.2 144 78.5
C06p23830 Brassica napus HOM05D005060 ORTHO05D005975 1.2e-42 176.8 144 78.5
Carub.0005s2365 Capsella rubella HOM05D005060 ORTHO05D005975 3.9e-41 171.8 153 77.1
AL5G38310 Arabidopsis lyrata HOM05D005060 ORTHO05D005975 8.6e-41 170.6 153 77.8
BcaC08g44810 Brassica carinata HOM05D005060 ORTHO05D005975 1.1e-40 170.2 134 74.6
Thhalv10006294m.g Eutrema salsugineum HOM05D005060 ORTHO05D005975 5.6e-40 167.9 151 76.8
A07p12270 Brassica napus HOM05D006945 ORTHO05D005549 5.6e-24 114.8 86 79.1
A07p12290 Brassica napus HOM05D006945 ORTHO05D005549 5.6e-24 114.8 86 79.1
BraA07t29011Z Brassica rapa HOM05D006945 ORTHO05D005549 5.6e-24 114.8 86 79.1
BcaB03g14272 Brassica carinata HOM05D005060 ORTHO05D005975 3.1e-22 109.0 133 58.6
Thecc.05G132800 Theobroma cacao HOM05D005060 ORTHO05D005975 1.9e-16 89.7 149 49.0
Aa31LG10G11770 Aethionema arabicum HOM05D005060 ORTHO05D005975 5.6e-16 88.2 153 57.5
Sabra16G0032200 Salix brachista HOM05D005060 ORTHO05D005975 9.6e-16 87.4 151 49.0
Potri.016G027600 Populus trichocarpa HOM05D005060 ORTHO05D005975 3.6e-15 85.5 151 46.4
Lj1g0025022 Lotus japonicus HOM05D005060 ORTHO05D005975 6.2e-15 84.7 154 47.4
Gohir.D01G177000 Gossypium hirsutum HOM05D005060 ORTHO05D005975 8.1e-15 84.3 150 47.3
Gorai.002G226200 Gossypium raimondii HOM05D005060 ORTHO05D005975 8.1e-15 84.3 150 47.3
Gohir.A01G192800 Gossypium hirsutum HOM05D005060 ORTHO05D005975 1.8e-14 83.2 150 46.7
vmacro08973 Vaccinium macrocarpon HOM05D005060 ORTHO05D005975 1.8e-14 83.2 139 42.4
Atru.chr1.1520 Acer truncatum HOM05D005060 ORTHO05D005975 9.0e-14 80.9 155 46.5
Lalb_Chr14g0365381 Lupinus albus HOM05D005060 ORTHO05D005975 1.2e-13 80.5 164 45.7
Cpa.g.sc33.199 Carica papaya HOM05D005060 ORTHO05D005975 2.0e-13 79.7 153 48.4
Ca_08351_v3 Cicer arietinum L. HOM05D005060 ORTHO05D005975 3.4e-13 79.0 154 46.1
Lalb_Chr24g0400621 Lupinus albus HOM05D005060 ORTHO05D005975 4.5e-13 78.6 160 44.4
Lalb_Chr22g0358011 Lupinus albus HOM05D005060 ORTHO05D005975 5.8e-13 78.2 162 44.4
Rhsim04G0118500 Rhododendron simsii HOM05D005060 ORTHO05D005975 9.9e-13 77.4 153 41.2
ClCG04G005980 Citrullus lanatus HOM05D005060 ORTHO05D005975 1.7e-12 76.6 156 42.3
MD02G1260500 Malus domestica HOM05D005060 ORTHO05D005975 2.2e-12 76.3 118 53.4
Sabra16G0031900 Salix brachista HOM05D005060 ORTHO05D005975 2.2e-12 76.3 96 60.4
MD07G1060800 Malus domestica HOM05D005060 ORTHO05D005975 2.9e-12 75.9 99 58.6
Os01g0278900 Oryza sativa ssp. japonica HOM05D005060 ORTHO05D005975 3.8e-12 75.5 127 44.1
RcHm_v2.0_Chr1g0331611 Rosa chinensis HOM05D005060 ORTHO05D005975 6.4e-12 74.7 148 47.3
Phvul.001G116500 Phaseolus vulgaris HOM05D005060 ORTHO05D005975 8.4e-12 74.3 151 49.0
VMungo1383G0657 Vigna mungo HOM05D005060 ORTHO05D005975 1.1e-11 73.9 148 48.0
Haze_20306 Corylus avellana HOM05D005060 ORTHO05D005975 1.9e-11 73.2 168 44.6
Gohir.A13G001200 Gossypium hirsutum HOM05D005060 ORTHO05D005975 1.9e-11 73.2 144 43.1
Lsat_1_v5_gn_8_109400 Lactuca sativa HOM05D005060 ORTHO05D005975 4.2e-11 72.0 147 41.5
MELO3C019148.2 Cucumis melo HOM05D005060 ORTHO05D005975 5.4e-11 71.6 151 43.0
CsaV3_4G029150 Cucumis sativus L. HOM05D005060 ORTHO05D005975 5.4e-11 71.6 153 42.5
Nitab4.5_0003286g0020 Nicotiana tabacum HOM05D005060 ORTHO05D005975 5.4e-11 71.6 151 39.1
Sed0011991 Sechium edule HOM05D005060 ORTHO05D005975 7.1e-11 71.2 154 44.2
Cfa019938 Carpinus fangiana HOM05D005060 ORTHO05D005975 1.6e-10 70.1 93 59.1
FAN03G0591 Fragaria x ananassa HOM05D005060 ORTHO05D005975 2.1e-10 69.7 142 46.5
Duzib093G0151 Durio zibethinus HOM05D005060 ORTHO05D005975 2.7e-10 69.3 150 46.7
FAN10G4368 Fragaria x ananassa HOM05D002241 ORTHO05D002458 4.6e-10 68.6 142 45.8
Prupe.2G065900 Prunus persica HOM05D005060 ORTHO05D005975 4.6e-10 68.6 157 45.9
THA.LOC104803240 Tarenaya hassleriana HOM05D005060 ORTHO05D005975 4.6e-10 68.6 155 50.3
FAN01G1650 Fragaria x ananassa HOM05D005060 ORTHO05D005975 6.0e-10 68.2 142 45.1
FAN06G1820 Fragaria x ananassa HOM05D002241 ORTHO05D002458 7.9e-10 67.8 91 61.5
FvH4_7g05170 Fragaria vesca HOM05D005060 ORTHO05D005975 1.3e-09 67.0 142 46.5
FAN06G0894 Fragaria x ananassa HOM05D005060 ORTHO05D005975 1.3e-09 67.0 142 46.5
TPR.G27972 Trifolium pratense HOM05D005060 ORTHO05D005975 1.3e-09 67.0 150 46.0
unitig_21.g20673 Utricularia gibba HOM05D005060 ORTHO05D005975 1.3e-09 67.0 148 45.3
PGR042G1122 Punica granatum HOM05D005060 ORTHO05D005975 1.8e-09 66.6 155 47.1
TWI53G1989 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 1.8e-09 66.6 148 43.2
arahy.Tifrunner.gnm1.ann1.3R5KQS Arachis hypogaea HOM05D005060 ORTHO05D005975 2.3e-09 66.2 148 43.9
Glyma.19G124900 Glycine max HOM05D005060 ORTHO05D005975 2.3e-09 66.2 140 48.6
Ciclev10013047m.g Citrus clementina HOM05D005060 ORTHO05D005975 3.0e-09 65.9 146 44.5
Psat0s2745g0280 Pisum sativum HOM05D005060 ORTHO05D005975 3.9e-09 65.5 159 39.0
CAN.G128.101 Capsicum annuum HOM05D005060 ORTHO05D005975 6.7e-09 64.7 155 37.4
arahy.Tifrunner.gnm1.ann1.U3TF2Z Arachis hypogaea HOM05D005060 ORTHO05D005975 2.5e-08 62.8 148 43.2
Eucgr.A02181 Eucalyptus grandis HOM05D005060 ORTHO05D005975 5.6e-08 61.6 156 44.9
Ah.13g077380 Amaranthus hybridus HOM05D005060 ORTHO05D005975 1.6e-07 60.1 148 42.6
Glyma.03G120300 Glycine max HOM05D005060 ORTHO05D005975 2.1e-07 59.7 158 44.9
Medtr7g088520 Medicago truncatula HOM05D005060 ORTHO05D005975 3.7e-07 58.9 159 40.9
Sopen10g031600 Solanum pennellii HOM05D005060 ORTHO05D005975 3.7e-07 58.9 155 34.8
SGA_v2.0_scaffold66G22311 Striga asiatica HOM05D005060 ORTHO05D005975 4.8e-07 58.5 156 42.9
Solyc10g081100.3 Solanum lycopersicum HOM05D005060 ORTHO05D005975 1.1e-06 57.4 155 34.8
Haze_20302 Corylus avellana HOM05D005060 ORTHO05D005975 2.4e-06 56.2 122 41.0
Duzib128G1851 Durio zibethinus HOM05D005060 ORTHO05D005975 3.1e-06 55.8 150 40.7
Psat3g082360 Pisum sativum HOM05D005060 ORTHO05D005975 3.1e-06 55.8 160 43.8
Actinidia05489 Actinidia chinensis HOM05D005060 ORTHO05D005975 4.0e-06 55.5 44 68.2
Potri.006G029500 Populus trichocarpa HOM05D005060 ORTHO05D005975 4.0e-06 55.5 100 41.0
TWI74G0004 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 5.3e-06 55.1 155 41.9
Ah.04g150220 Amaranthus hybridus HOM05D005060 ORTHO05D005975 6.9e-06 54.7 91 51.6


User provided reference genes

Program Settings