Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39998 Brassica carinata HOM05D005945 ORTHO05D006749 0.0e+00 1507.3 798 100.0
C08p32110 Brassica napus HOM05D005945 ORTHO05D006749 0.0e+00 1507.3 798 100.0
BolC8t50829H Brassica oleracea HOM05D005945 ORTHO05D006749 0.0e+00 1429.5 798 95.9
A09p49740 Brassica napus HOM05D005945 ORTHO05D006749 0.0e+00 1340.9 803 90.9
BraA09t40427Z Brassica rapa HOM05D005945 ORTHO05D006749 0.0e+00 1340.9 803 90.9
BcaC07g40112 Brassica carinata HOM05D005945 ORTHO05D006749 0.0e+00 1165.2 811 81.3
Sp5g05720 Schrenkiella parvula HOM05D005945 ORTHO05D006749 8.9e-305 1050.0 822 73.4
Thhalv10005811m.g Eutrema salsugineum HOM05D005945 ORTHO05D006749 3.2e-262 908.7 821 64.7
Carub.0005s2360 Capsella rubella HOM05D005945 ORTHO05D006749 2.2e-218 763.1 815 56.7
AL5G38260 Arabidopsis lyrata HOM05D005945 ORTHO05D006749 9.8e-211 737.6 811 56.2
AT3G56870 Arabidopsis thaliana HOM05D005945 ORTHO05D006749 3.5e-200 702.6 814 55.3
CARHR167020 Cardamine hirsuta HOM05D005945 ORTHO05D006749 2.5e-137 493.8 564 55.5
Aa31LG10G11720 Aethionema arabicum HOM05D005945 ORTHO05D006749 3.0e-127 460.3 829 41.5
THA.LOC104803244 Tarenaya hassleriana HOM05D005945 ORTHO05D006749 2.7e-99 367.5 901 34.6
Gorai.010G010800 Gossypium raimondii HOM05D005945 ORTHO05D006749 1.2e-54 219.2 892 28.9
Gohir.D06G008100 Gossypium hirsutum HOM05D005945 ORTHO05D006749 5.8e-54 216.9 892 29.0
Cpa.g.sc64.76 Carica papaya HOM05D005945 ORTHO05D006749 1.6e-51 208.8 981 26.0
Thecc.08G024700 Theobroma cacao HOM05D005945 ORTHO05D006749 2.5e-49 201.4 908 27.8
COL.COLO4_26338 Corchorus olitorius HOM05D005945 ORTHO05D006749 4.8e-48 197.2 932 27.5
Gohir.A06G010700 Gossypium hirsutum HOM05D005945 ORTHO05D006749 1.8e-47 195.3 904 28.0
Duzib093G2051 Durio zibethinus HOM05D005945 ORTHO05D006749 2.4e-47 194.9 918 27.2
Actinidia15315 Actinidia chinensis HOM05D005945 ORTHO05D006749 3.5e-43 181.0 862 26.5
Potri.014G181200 Populus trichocarpa HOM05D005945 ORTHO05D006749 1.3e-40 172.6 275 39.6
CSS0038834 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 6.9e-39 166.8 858 25.8
Dinv39407 Davidia involucrata HOM05D005945 ORTHO05D006749 6.9e-39 166.8 329 36.8
CSS0001698 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 1.5e-38 165.6 859 26.1
QL02p007988 Quercus lobata HOM05D005945 ORTHO05D006749 3.2e-36 157.9 964 25.6
CANSAT25G3494 Cannabis sativa HOM05D005945 ORTHO05D006749 5.5e-36 157.1 284 37.0
TWI12G1232 Tripterygium wilfordii HOM05D005945 ORTHO05D006749 2.1e-35 155.2 259 36.7
GSVIVG01009690001 Vitis vinifera HOM05D005945 ORTHO05D006749 1.3e-34 152.5 263 39.9
Ca_03064_v3 Cicer arietinum L. HOM05D005945 ORTHO05D006749 3.0e-34 151.4 255 38.4
Eucgr.F01555 Eucalyptus grandis HOM05D005945 ORTHO05D006749 3.3e-33 147.9 834 24.9
Sabra14G0141200 Salix brachista HOM05D005945 ORTHO05D006749 3.3e-33 147.9 346 33.2
SGA_v2.0_scaffold326G48709 Striga asiatica HOM05D005945 ORTHO05D006749 5.7e-33 147.1 250 37.2
arahy.Tifrunner.gnm1.ann1.Q0ZVI3 Arachis hypogaea HOM05D005945 ORTHO05D006749 7.4e-33 146.7 375 33.1
Migut.C00710 Erythranthe guttata HOM05D005945 ORTHO05D006749 1.3e-32 146.0 266 37.2
Manes.05G161400 Manihot esculenta HOM05D005945 ORTHO05D006749 1.3e-32 146.0 858 24.9
TPR.G32532 Trifolium pratense HOM05D005945 ORTHO05D006749 1.3e-32 146.0 319 35.1
FAN15G0837 Fragaria x ananassa HOM05D005945 ORTHO05D006749 1.6e-32 145.6 278 38.5
HanXRQChr04g0105591 Helianthus annuus HOM05D005945 ORTHO05D006749 1.6e-32 145.6 268 37.7
Medtr4g019490 Medicago truncatula HOM05D005945 ORTHO05D006749 1.6e-32 145.6 268 38.1
FvH4_2g39990 Fragaria vesca HOM05D005945 ORTHO05D006749 2.8e-32 144.8 278 38.5
Oeu056183.1 Olea europaea HOM05D005945 ORTHO05D006749 2.8e-32 144.8 333 34.8
FAN20G0334 Fragaria x ananassa HOM05D005945 ORTHO05D006749 4.8e-32 144.1 278 38.5
ClCG08G015230 Citrullus lanatus HOM05D005945 ORTHO05D006749 6.2e-32 143.7 310 34.5
Cc10_g03040 Coffea canephora HOM05D005945 ORTHO05D006749 6.2e-32 143.7 365 32.3
Lsat_1_v5_gn_1_17620 Lactuca sativa HOM05D005945 ORTHO05D006749 8.2e-32 143.3 344 32.8
MD08G1033800 Malus domestica HOM05D005945 ORTHO05D006749 1.4e-31 142.5 330 33.9
TAR628G0886 Trochodendron aralioides HOM05D005945 ORTHO05D006749 1.8e-31 142.1 321 33.6
Haze_17984 Corylus avellana HOM05D005945 ORTHO05D006749 2.4e-31 141.7 819 26.4
Sopen04g033790 Solanum pennellii HOM05D005945 ORTHO05D006749 2.4e-31 141.7 373 32.2
Psat7g242000 Pisum sativum HOM05D005945 ORTHO05D006749 5.3e-31 140.6 259 37.1
FAN27G1966 Fragaria x ananassa HOM05D005945 ORTHO05D006749 6.9e-31 140.2 278 38.1
Lj4A42T73 Lonicera japonica HOM05D005945 ORTHO05D006749 6.9e-31 140.2 134 53.7
PGSC0003DMG400005162 Solanum tuberosum HOM05D005945 ORTHO05D006749 6.9e-31 140.2 820 25.6
CiPaw.15G076000 Carya illinoinensis HOM05D005945 ORTHO05D006749 1.2e-30 139.4 305 34.1
Gohir.D02G094500 Gossypium hirsutum HOM05D005945 ORTHO05D006749 1.2e-30 139.4 254 36.6
VMungo0331G0095 Vigna mungo HOM05D005945 ORTHO05D006749 1.2e-30 139.4 327 33.3
Gorai.005G107400 Gossypium raimondii HOM05D005945 ORTHO05D006749 2.0e-30 138.7 256 37.5
Nitab4.5_0000110g0520 Nicotiana tabacum HOM05D005945 ORTHO05D006749 2.0e-30 138.7 815 24.2
Cfa018140 Carpinus fangiana HOM05D005945 ORTHO05D006749 3.4e-30 137.9 842 23.6
Prupe.1G381200 Prunus persica HOM05D005945 ORTHO05D006749 3.4e-30 137.9 826 25.9
RcHm_v2.0_Chr6g0300761 Rosa chinensis HOM05D005945 ORTHO05D006749 7.6e-30 136.7 280 38.2
Manes.18G028200 Manihot esculenta HOM05D005945 ORTHO05D006749 1.3e-29 136.0 860 25.2
Glyma.03G071500 Glycine max HOM05D005945 ORTHO05D006749 1.7e-29 135.6 307 34.2
Atru.chr13.502 Acer truncatum HOM05D005945 ORTHO05D006749 8.4e-29 133.3 224 38.8
Lalb_Chr03g0042671 Lupinus albus HOM05D005945 ORTHO05D006749 8.4e-29 133.3 299 32.8
Oeu036192.1 Olea europaea HOM05D005945 ORTHO05D006749 8.4e-29 133.3 694 26.9
Peaxi162Scf00690g00118 Petunia axillaris HOM05D005945 ORTHO05D006749 8.4e-29 133.3 308 31.8
Sed0009733 Sechium edule HOM05D005945 ORTHO05D006749 8.4e-29 133.3 857 24.6
MSTRG.25161 Avicennia marina HOM05D005945 ORTHO05D006749 1.1e-28 132.9 259 34.7
Dinv36067 Davidia involucrata HOM05D005945 ORTHO05D006749 1.4e-28 132.5 229 38.0
DCAR_008766 Daucus carota HOM05D005945 ORTHO05D006749 1.9e-28 132.1 874 24.1
ECA247G0868 Erigeron canadensis HOM05D005945 ORTHO05D006749 1.9e-28 132.1 259 35.9
arahy.Tifrunner.gnm1.ann1.01TKSZ Arachis hypogaea HOM05D005945 ORTHO05D006749 2.5e-28 131.7 412 31.8
MELO3C010931.2 Cucumis melo HOM05D005945 ORTHO05D006749 2.5e-28 131.7 843 24.7
Glyma.01G104600 Glycine max HOM05D005945 ORTHO05D006749 3.2e-28 131.3 316 32.9
Solyc04g080200.4 Solanum lycopersicum HOM05D005945 ORTHO05D006749 3.2e-28 131.3 657 26.9
Lj3g0003314 Lotus japonicus HOM05D005945 ORTHO05D006749 1.2e-27 129.4 323 32.2
Hund26580 Selenicereus undatus HOM05D005945 ORTHO05D006749 2.7e-27 128.3 244 34.4
HanXRQChr04g0105581 Helianthus annuus HOM05D005945 ORTHO05D006749 1.0e-26 126.3 271 35.1
Nn5g29549 Nelumbo nucifera HOM05D005945 ORTHO05D006749 1.0e-26 126.3 870 24.8
TAR376G0838 Trochodendron aralioides HOM05D005945 ORTHO05D006749 1.0e-26 126.3 836 24.2
Sc15g0006890 Simmondsia chinensis HOM05D005945 ORTHO05D006749 3.0e-26 124.8 840 25.1
Phvul.010G012000 Phaseolus vulgaris HOM05D005945 ORTHO05D006749 5.1e-26 124.0 857 23.9
TAR628G0416 Trochodendron aralioides HOM05D005945 ORTHO05D006749 5.1e-26 124.0 180 40.6
Nitab4.5_0003783g0040 Nicotiana tabacum HOM05D005945 ORTHO05D006749 6.7e-26 123.6 753 24.8
Aqoxy4G01586 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 5.7e-25 120.6 234 36.3
CsaV3_2G028570 Cucumis sativus L. HOM05D005945 ORTHO05D006749 1.3e-24 119.4 833 24.4
PSO675G9049 Papaver somniferum HOM05D005945 ORTHO05D006749 1.3e-24 119.4 271 31.4
PSO541G4169 Papaver somniferum HOM05D005945 ORTHO05D006749 1.6e-24 119.0 271 31.4
THA.LOC104803300 Tarenaya hassleriana HOM05D005945 ORTHO05D006749 8.2e-24 116.7 191 44.0
Zm00001eb404680 Zea mays HOM05D005945 ORTHO05D006749 5.3e-23 114.0 343 29.7
MBI16_g17464_MAGBIO Magnolia biondii HOM05D005945 ORTHO05D006749 9.0e-23 113.2 282 31.9
PGR031G1506 Punica granatum HOM05D005945 ORTHO05D006749 1.2e-22 112.8 791 23.3
Rhsim06G0034700 Rhododendron simsii HOM05D005945 ORTHO05D006749 1.5e-22 112.5 845 25.8
ATR0618G067 Amborella trichopoda HOM05D005945 ORTHO05D006749 1.3e-21 109.4 123 49.6
Os03g0594700 Oryza sativa ssp. japonica HOM05D005945 ORTHO05D006749 1.7e-21 109.0 319 30.1
Aqoxy6G01057 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 1.9e-20 105.5 123 44.7
Sed0010063 Sechium edule HOM05D005945 ORTHO05D006749 5.5e-20 104.0 252 30.2
Ah.11g043130 Amaranthus hybridus HOM05D005945 ORTHO05D006749 9.4e-20 103.2 280 28.9
AUR62043686 Chenopodium quinoa HOM05D005945 ORTHO05D006749 9.4e-20 103.2 892 23.4
Lj2g0002553 Lotus japonicus HOM05D005945 ORTHO05D006749 9.4e-20 103.2 306 32.4
Zm00001eb021170 Zea mays HOM05D005945 ORTHO05D006749 3.6e-19 101.3 339 26.8
Actinidia22556 Actinidia chinensis HOM05D005945 ORTHO05D006749 1.4e-18 99.4 125 44.0
SEGI_34412 Sequoiadendron giganteum HOM05D057448 ORTHO05D006749 2.3e-18 98.6 136 39.7
Lalb_Chr19g0125071 Lupinus albus HOM05D005945 ORTHO05D006749 3.0e-18 98.2 214 31.8
MD15G1030400 Malus domestica HOM05D005945 ORTHO05D006749 3.0e-18 98.2 793 24.6
HPP92_021270 Vanilla planifolia HOM05D005945 ORTHO05D006749 1.5e-17 95.9 250 31.2
Aqoxy4G01559 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 1.7e-16 92.4 204 34.8
vmacro21631 Vaccinium macrocarpon HOM05D005945 ORTHO05D006749 1.1e-15 89.7 148 37.8
AUR62038825 Chenopodium quinoa HOM05D005945 ORTHO05D006749 4.1e-15 87.8 819 24.8
EL10Ac1g01817 Beta vulgaris HOM05D005945 ORTHO05D006749 3.2e-12 78.2 876 22.7
Ah.05g167400 Amaranthus hybridus HOM05D005945 ORTHO05D006749 2.1e-11 75.5 211 28.4
CDE04G3738 Ceratophyllum demersum HOM05D060868 ORTHO05D006749 5.1e-10 70.9 64 53.1
vmacro21630 Vaccinium macrocarpon HOM05D005945 ORTHO05D006749 4.4e-09 67.8 186 28.0
Atru.chr13.504 Acer truncatum HOM05D005945 ORTHO05D006749 3.5e-06 58.2 256 26.6


User provided reference genes

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