Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p32070 Brassica napus HOM05D005510 ORTHO05D006750 4.8e-202 707.6 355 100.0
A09p49660 Brassica napus HOM05D005510 ORTHO05D006750 1.1e-190 669.8 354 95.5
BraA09t40419Z Brassica rapa HOM05D005510 ORTHO05D006750 1.1e-190 669.8 354 95.5
BolC8t50825H Brassica oleracea HOM05D005510 ORTHO05D006750 6.8e-188 660.6 337 97.9
BcaC07g39994 Brassica carinata HOM05D005510 ORTHO05D006750 5.9e-176 620.9 337 93.8
BcaC07g40115 Brassica carinata HOM05D005510 ORTHO05D006750 7.8e-176 620.5 338 92.6
Sp5g05750 Schrenkiella parvula HOM05D005510 ORTHO05D006750 4.1e-169 598.2 348 86.8
AT3G56840 Arabidopsis thaliana HOM05D005510 ORTHO05D006750 7.3e-166 587.4 347 84.7
Thhalv10005964m.g Eutrema salsugineum HOM05D005510 ORTHO05D006750 6.2e-165 584.3 365 82.2
AL5G38220 Arabidopsis lyrata HOM05D005510 ORTHO05D006750 4.4e-163 578.2 346 83.5
Carub.0005s2357 Capsella rubella HOM05D005510 ORTHO05D006750 2.2e-162 575.9 337 85.5
Aa31LG10G11690 Aethionema arabicum HOM05D005510 ORTHO05D006750 1.7e-146 523.1 345 76.5
THA.LOC104803249 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 2.2e-138 496.1 349 73.6
Cpa.g.sc33.180 Carica papaya HOM05D005510 ORTHO05D006750 1.1e-118 430.6 312 69.6
Dinv14542 Davidia involucrata HOM05D005510 ORTHO05D006750 9.0e-116 421.0 310 68.1
Prupe.7G023400 Prunus persica HOM05D005510 ORTHO05D006750 1.7e-114 416.8 345 63.8
TWI74G1137 Tripterygium wilfordii HOM05D005510 ORTHO05D006750 4.9e-114 415.2 308 66.6
CSS0010239 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 6.5e-114 414.8 316 65.5
QL07p015480 Quercus lobata HOM05D005510 ORTHO05D006750 8.4e-114 414.5 310 66.5
MD14G1100100 Malus domestica HOM05D005510 ORTHO05D006750 1.9e-113 413.3 304 69.1
Aqoxy3G03066 Aquilegia oxysepala HOM05D005510 ORTHO05D006750 2.5e-113 412.9 310 66.5
Ciclev10011846m.g Citrus clementina HOM05D005510 ORTHO05D006750 2.5e-113 412.9 324 65.4
GSVIVG01025858001 Vitis vinifera HOM05D005510 ORTHO05D006750 3.2e-113 412.5 309 66.3
FvH4_1g29380 Fragaria vesca HOM05D005510 ORTHO05D006750 4.2e-113 412.1 305 67.9
Potri.006G026100 Populus trichocarpa HOM05D005510 ORTHO05D006750 4.2e-113 412.1 330 62.7
Rhsim13G0197800 Rhododendron simsii HOM05D005510 ORTHO05D006750 9.3e-113 411.0 303 66.7
Atru.chr8.924 Acer truncatum HOM05D005510 ORTHO05D006750 1.6e-112 410.2 315 65.1
FAN26G2114 Fragaria x ananassa HOM05D005510 ORTHO05D006750 1.6e-112 410.2 305 67.5
PSO384G1661 Papaver somniferum HOM05D005510 ORTHO05D006750 2.1e-112 409.8 306 65.0
CsaV3_4G029010 Cucumis sativus L. HOM05D005510 ORTHO05D006750 2.7e-112 409.5 314 65.3
CANSAT11G0391 Cannabis sativa HOM05D005510 ORTHO05D006750 3.5e-112 409.1 302 65.9
Nn7g37230 Nelumbo nucifera HOM05D005510 ORTHO05D006750 1.0e-111 407.5 326 60.7
Eucgr.A02173 Eucalyptus grandis HOM05D005510 ORTHO05D006750 1.3e-111 407.1 321 64.8
MBI13_g44207_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 3.0e-111 406.0 319 61.8
Actinidia38200 Actinidia chinensis HOM05D005510 ORTHO05D006750 3.9e-111 405.6 307 65.5
PSO339G1815 Papaver somniferum HOM05D005510 ORTHO05D006750 3.9e-111 405.6 306 63.7
RcHm_v2.0_Chr3g0495031 Rosa chinensis HOM05D005510 ORTHO05D006750 3.9e-111 405.6 341 62.2
Sed0017548 Sechium edule HOM05D005510 ORTHO05D006750 5.1e-111 405.2 312 64.4
Sc13g0000690 Simmondsia chinensis HOM05D005510 ORTHO05D006750 1.1e-110 404.1 332 62.3
MELO3C019166.2 Cucumis melo HOM05D005510 ORTHO05D006750 3.3e-110 402.5 314 64.0
Cfa019896 Carpinus fangiana HOM05D005510 ORTHO05D006750 7.4e-110 401.4 304 66.4
Thecc.05G124100 Theobroma cacao HOM05D005510 ORTHO05D006750 7.4e-110 401.4 303 66.3
Cc06_g18550 Coffea canephora HOM05D005510 ORTHO05D006750 9.7e-110 401.0 306 65.7
Hund24472 Selenicereus undatus HOM05D005510 ORTHO05D006750 1.1e-108 397.5 309 63.4
SalBow6G2337 Salvia bowleyana HOM05D005510 ORTHO05D006750 1.4e-108 397.1 311 62.7
SalBow6G2820 Salvia bowleyana HOM05D005510 ORTHO05D006750 1.4e-108 397.1 311 62.7
Hma1.2p1_1327F.1_g275900 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 1.8e-108 396.7 302 64.9
Hma1.2p1_1327F.1_g275890 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 2.4e-108 396.4 301 64.8
Medtr6g026730 Medicago truncatula HOM05D005510 ORTHO05D006750 2.4e-108 396.4 301 64.8
Sabra06G0019200 Salix brachista HOM05D005510 ORTHO05D006750 5.3e-108 395.2 358 57.3
Gorai.002G222700 Gossypium raimondii HOM05D005510 ORTHO05D006750 6.9e-108 394.8 305 64.6
Lj1C1070G2 Lonicera japonica HOM05D005510 ORTHO05D006750 9.0e-108 394.4 306 64.7
A09p49680 Brassica napus HOM05D005510 ORTHO05D006750 1.2e-107 394.0 199 96.5
Haze_20353 Corylus avellana HOM05D005510 ORTHO05D006750 1.2e-107 394.0 319 63.3
BraA09t40424Z Brassica rapa HOM05D005510 ORTHO05D006750 1.5e-107 393.7 197 97.5
Gohir.D01G179900 Gossypium hirsutum HOM05D005510 ORTHO05D006750 1.5e-107 393.7 305 64.3
HPP92_018208 Vanilla planifolia HOM05D005510 ORTHO05D006750 1.5e-107 393.7 302 64.6
PGSC0003DMG400008133 Solanum tuberosum HOM05D005510 ORTHO05D006750 2.0e-107 393.3 311 64.0
Manes.10G072300 Manihot esculenta HOM05D005510 ORTHO05D006750 3.4e-107 392.5 323 61.6
AUR62020963 Chenopodium quinoa HOM05D005510 ORTHO05D006750 4.5e-107 392.1 307 61.6
DCAR_020612 Daucus carota HOM05D005510 ORTHO05D006750 4.5e-107 392.1 307 64.2
Ca_04447_v3 Cicer arietinum L. HOM05D002043 ORTHO05D002207 5.9e-107 391.7 305 61.6
Oeu008195.1 Olea europaea HOM05D005510 ORTHO05D006750 5.9e-107 391.7 307 62.5
PGR042G2248 Punica granatum HOM05D005510 ORTHO05D006750 7.7e-107 391.3 302 62.3
Glyma.05G079900 Glycine max HOM05D005510 ORTHO05D006750 1.7e-106 390.2 354 56.2
Phvul.004G053400 Phaseolus vulgaris HOM05D005510 ORTHO05D006750 2.2e-106 389.8 305 63.3
EL10Ac3g07380 Beta vulgaris HOM05D005510 ORTHO05D006750 3.8e-106 389.0 303 62.4
Duzib093G0795 Durio zibethinus HOM05D005510 ORTHO05D006750 3.8e-106 389.0 306 64.4
ATR1096G068 Amborella trichopoda HOM05D005510 ORTHO05D006750 6.5e-106 388.3 323 58.2
Os01g0809900 Oryza sativa ssp. japonica HOM05D005510 ORTHO05D006750 8.5e-106 387.9 314 60.2
Psat1g087480 Pisum sativum HOM05D005510 ORTHO05D006750 8.5e-106 387.9 332 58.4
Gohir.A01G189700 Gossypium hirsutum HOM05D005510 ORTHO05D006750 1.1e-105 387.5 306 64.1
Sopen10g030080 Solanum pennellii HOM05D005510 ORTHO05D006750 1.1e-105 387.5 315 61.9
arahy.Tifrunner.gnm1.ann1.VC24PE Arachis hypogaea HOM05D005510 ORTHO05D006750 5.5e-105 385.2 326 58.6
Migut.J01685 Erythranthe guttata HOM05D005510 ORTHO05D006750 7.2e-105 384.8 308 62.3
SGA_v2.0_scaffold69G23139 Striga asiatica HOM05D005510 ORTHO05D006750 7.2e-105 384.8 307 61.9
Lj5g0015267 Lotus japonicus HOM05D005510 ORTHO05D006750 9.4e-105 384.4 352 56.8
Solyc10g079440.2 Solanum lycopersicum HOM05D005510 ORTHO05D006750 1.2e-104 384.0 307 62.9
Peaxi162Scf00002g00419 Petunia axillaris HOM05D005510 ORTHO05D006750 7.9e-104 381.3 307 61.9
Lalb_Chr02g0157631 Lupinus albus HOM05D005510 ORTHO05D006750 1.4e-103 380.6 326 59.2
Nitab4.5_0002805g0080 Nicotiana tabacum HOM05D005510 ORTHO05D006750 2.3e-103 379.8 326 61.3
arahy.Tifrunner.gnm1.ann1.RHHN50 Arachis hypogaea HOM05D005510 ORTHO05D006750 5.1e-103 378.6 326 57.4
EL10Ac3g07382 Beta vulgaris HOM05D005510 ORTHO05D006750 6.7e-103 378.3 337 56.7
TAR623G1399 Trochodendron aralioides HOM05D005510 ORTHO05D006750 6.7e-103 378.3 352 57.1
CDE08G0225 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 8.8e-103 377.9 328 58.5
Lsat_1_v5_gn_5_40140 Lactuca sativa HOM05D005510 ORTHO05D006750 3.3e-102 375.9 311 59.2
Nitab4.5_0000646g0280 Nicotiana tabacum HOM05D005510 ORTHO05D006750 5.7e-102 375.2 326 59.8
COL.COLO4_37568 Corchorus olitorius HOM05D005510 ORTHO05D006750 2.2e-101 373.2 313 60.7
ClCG04G005050 Citrullus lanatus HOM05D005510 ORTHO05D006750 2.2e-98 363.2 313 59.1
HanXRQChr02g0047171 Helianthus annuus HOM05D005510 ORTHO05D006750 3.8e-98 362.5 304 58.9
unitig_749.g14152 Utricularia gibba HOM05D005510 ORTHO05D006750 2.1e-96 356.7 306 60.5
VMungo0464G0325 Vigna mungo HOM05D005510 ORTHO05D006750 7.4e-94 348.2 379 49.3
MBI13_g43864_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 4.8e-93 345.5 319 55.2
Pp3c12_4730 Physcomitrium patens HOM05D005510 ORTHO05D006750 3.9e-87 325.9 321 51.4
Mapoly0011s0121 Marchantia polymorpha HOM05D005510 ORTHO05D006750 1.7e-85 320.5 305 51.8
AagrBONN_evm.TU.Sc2ySwM_344.4799 Anthoceros agrestis HOM05D005510 ORTHO05D000746 1.4e-84 317.4 293 52.6
CSS0036939 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 1.0e-82 311.2 241 63.1
arahy.Tifrunner.gnm1.ann1.T4STFC Arachis hypogaea HOM05D005510 ORTHO05D006750 1.7e-82 310.5 306 52.6
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 8.0e-80 301.6 303 52.1
AUR62018456 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.5e-78 297.4 241 58.9
CAN.G641.38 Capsicum annuum HOM05D005510 ORTHO05D006750 2.6e-78 296.6 241 61.4
CSS0041188 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 7.5e-78 295.0 242 61.6
SMO116G0325 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 5.2e-71 272.3 310 45.8
CARHR166990 Cardamine hirsuta HOM05D005510 ORTHO05D006750 5.5e-65 252.3 146 84.9
Zm00001eb150290 Zea mays HOM05D005510 ORTHO05D006750 1.6e-59 234.2 201 58.2
CiPaw.09G161300 Carya illinoinensis HOM05D005510 ORTHO05D006750 7.8e-59 231.9 191 60.7
MSTRG.19825 Avicennia marina HOM05D005510 ORTHO05D006750 1.0e-55 221.5 161 67.1
Cre13.g574150 Chlamydomonas reinhardtii HOM05D005510 ORTHO05D006750 3.1e-55 219.9 338 40.2
Manes.07G109500 Manihot esculenta HOM05D005510 ORTHO05D006750 2.6e-54 216.9 156 67.9
TPR.G942 Trifolium pratense HOM05D005510 ORTHO05D006750 9.8e-54 214.9 148 69.6
arahy.Tifrunner.gnm1.ann1.MR8QPJ Arachis hypogaea HOM05D005510 ORTHO05D006750 1.3e-53 214.5 305 41.3
Manes.05G099066 Manihot esculenta HOM05D005510 ORTHO05D006750 4.9e-53 212.6 197 58.4
THA.LOC104803303 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 5.4e-52 209.1 150 68.7
SEGI_04748 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 1.6e-51 207.6 157 63.1
TPR.G23234 Trifolium pratense HOM05D005510 ORTHO05D006750 2.5e-41 173.7 146 56.2
THA.LOC104803301 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 7.3e-41 172.2 99 78.8
Cfa027308 Carpinus fangiana HOM05D005510 ORTHO05D006750 8.9e-39 165.2 303 37.3
PGSC0003DMG400012053 Solanum tuberosum HOM05D005510 ORTHO05D006750 9.9e-38 161.8 145 57.2
CAN.G248.49 Capsicum annuum HOM05D005510 ORTHO05D006750 3.5e-35 153.3 199 47.2
SalBow7G3561 Salvia bowleyana HOM05D005510 ORTHO05D006750 2.5e-33 147.1 120 60.0
CBR_g4412 Chara braunii HOM05D005510 ORTHO05D006750 1.8e-31 141.0 306 31.4
SMO356G0394 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 6.4e-29 132.5 286 31.1
Pp3c25_9310 Physcomitrium patens HOM05D005510 ORTHO05D006750 1.1e-28 131.7 297 30.6
AagrBONN_evm.TU.Sc2ySwM_344.567 Anthoceros agrestis HOM05D005510 ORTHO05D006750 2.4e-28 130.6 326 31.3
Mapoly0085s0100 Marchantia polymorpha HOM05D005510 ORTHO05D006750 4.2e-28 129.8 287 31.7
Zm00001eb093570 Zea mays HOM05D005510 ORTHO05D006750 2.5e-25 120.6 199 37.2
MD14G1091800 Malus domestica HOM05D005510 ORTHO05D006750 1.7e-21 107.8 73 68.5
PRCOL_00000521 Prasinoderma coloniale HOM05D005510 ORTHO05D006750 1.7e-21 107.8 272 29.4
Zm00001eb341880 Zea mays HOM05D005510 ORTHO05D006750 2.2e-21 107.5 114 50.0
AUR62018455 Chenopodium quinoa HOM05D005510 ORTHO05D006750 6.4e-21 105.9 69 71.0
MD14G1091600 Malus domestica HOM05D005510 ORTHO05D006750 1.7e-18 97.8 64 76.6
CAN.G636.4 Capsicum annuum HOM05D005510 ORTHO05D006750 4.3e-17 93.2 236 33.1
CAN.G641.39 Capsicum annuum HOM05D005510 ORTHO05D006750 5.6e-17 92.8 68 69.1
CDE09G0372 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 2.2e-13 80.9 143 36.4
MD14G1091700 Malus domestica HOM05D005510 ORTHO05D006750 4.8e-08 63.2 59 59.3


User provided reference genes

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