Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p31830 Brassica napus HOM05D007044 ORTHO05D008981 2.1e-283 978.4 509 100.0
BraA09t40398Z Brassica rapa HOM05D007044 ORTHO05D008981 4.6e-262 907.5 505 94.5
BolC8t50802H Brassica oleracea HOM05D007044 ORTHO05D008981 1.1e-255 886.3 514 91.6
A09p49450 Brassica napus HOM05D007044 ORTHO05D008981 6.0e-254 880.6 487 94.9
BcaC07g39965 Brassica carinata HOM05D007044 ORTHO05D008981 2.0e-249 865.5 503 91.1
Sp5g05990 Schrenkiella parvula HOM05D007044 ORTHO05D008981 1.2e-217 760.0 518 78.6
BcaC07g40141 Brassica carinata HOM05D007044 ORTHO05D008981 1.3e-216 756.5 489 83.4
AL5G37940 Arabidopsis lyrata HOM05D007044 ORTHO05D008981 5.9e-201 704.5 525 73.5
Carub.0005s2331 Capsella rubella HOM05D007044 ORTHO05D008981 5.7e-196 688.0 530 71.7
AT3G56570 Arabidopsis thaliana HOM05D007044 ORTHO05D008981 1.2e-193 680.2 536 71.1
Aa31LG10G11390 Aethionema arabicum HOM05D007044 ORTHO05D008981 1.4e-173 613.6 523 65.2
THA.LOC104827319 Tarenaya hassleriana HOM05D007044 ORTHO05D008981 1.4e-162 577.0 507 62.1
Thhalv10006013m.g Eutrema salsugineum HOM05D007044 ORTHO05D008981 1.8e-149 533.5 402 73.4
Gorai.012G045900 Gossypium raimondii HOM05D007044 ORTHO05D008981 1.9e-138 496.9 485 56.3
Gohir.A05G375000 Gossypium hirsutum HOM05D007044 ORTHO05D008981 2.4e-138 496.5 485 56.1
Ca_09906_v3 Cicer arietinum L. HOM05D007044 ORTHO05D008981 5.4e-138 495.4 500 53.4
Haze_19360 Corylus avellana HOM05D007044 ORTHO05D008981 3.5e-137 492.7 521 53.4
Gohir.D04G040700 Gossypium hirsutum HOM05D007044 ORTHO05D008981 3.0e-136 489.6 485 55.7
CARHR166680 Cardamine hirsuta HOM05D007044 ORTHO05D008981 6.6e-136 488.4 409 67.0
Duzib147G1221 Durio zibethinus HOM05D007044 ORTHO05D008981 6.6e-136 488.4 488 54.5
TPR.G16624 Trifolium pratense HOM05D007044 ORTHO05D008981 8.6e-136 488.0 511 52.1
Thecc.01G145800 Theobroma cacao HOM05D007044 ORTHO05D008981 2.5e-135 486.5 487 55.6
TWI75G1760 Tripterygium wilfordii HOM05D007044 ORTHO05D008981 2.5e-135 486.5 494 53.8
Ciclev10027575m.g Citrus clementina HOM05D007044 ORTHO05D008981 7.3e-135 485.0 508 53.1
Cfa020928 Carpinus fangiana HOM05D007044 ORTHO05D008981 1.6e-134 483.8 523 52.4
Glyma.20G214500 Glycine max HOM05D007044 ORTHO05D008981 1.6e-134 483.8 481 52.8
GSVIVG01000252001 Vitis vinifera HOM05D007044 ORTHO05D008981 4.7e-134 482.3 482 54.4
Actinidia19938 Actinidia chinensis HOM05D007044 ORTHO05D008981 1.1e-133 481.1 488 53.5
Psat6g111960 Pisum sativum HOM05D007044 ORTHO05D008981 2.3e-133 479.9 502 51.8
Manes.13G154300 Manihot esculenta HOM05D007044 ORTHO05D008981 5.2e-133 478.8 483 55.5
Lalb_Chr06g0168751 Lupinus albus HOM05D007044 ORTHO05D008981 6.8e-133 478.4 504 51.6
TAR381G1118 Trochodendron aralioides HOM05D007044 ORTHO05D008981 8.9e-133 478.0 509 53.2
Medtr1g077040 Medicago truncatula HOM05D007044 ORTHO05D008981 2.0e-132 476.9 506 52.0
Phvul.007G114400 Phaseolus vulgaris HOM05D007044 ORTHO05D008981 2.6e-132 476.5 510 51.4
VMungo0720G2193 Vigna mungo HOM05D007044 ORTHO05D008981 4.4e-132 475.7 509 50.7
AUR62000601 Chenopodium quinoa HOM05D007044 ORTHO05D008981 9.9e-132 474.6 510 52.0
EL10Ac4g09721 Beta vulgaris HOM05D007044 ORTHO05D008981 4.1e-130 469.2 492 53.7
PGR119G1191 Punica granatum HOM05D007044 ORTHO05D008981 5.4e-130 468.8 504 53.6
Sabra04G0082400 Salix brachista HOM05D007044 ORTHO05D008981 9.2e-130 468.0 461 55.5
Lj5g0011072 Lotus japonicus HOM05D007044 ORTHO05D008981 2.1e-129 466.8 508 51.0
Hma1.2p1_0050F.1_g029110 Hydrangea macrophylla HOM05D007044 ORTHO05D008981 1.8e-125 453.8 488 51.2
arahy.Tifrunner.gnm1.ann1.H6ML7T Arachis hypogaea HOM05D007044 ORTHO05D008981 4.0e-125 452.6 512 49.2
vmacro05323 Vaccinium macrocarpon HOM05D007044 ORTHO05D008981 4.0e-125 452.6 492 51.8
AUR62006952 Chenopodium quinoa HOM05D007044 ORTHO05D008981 6.8e-125 451.8 510 50.6
Ah.02g118170 Amaranthus hybridus HOM05D007044 ORTHO05D008981 8.9e-125 451.4 513 49.7
arahy.Tifrunner.gnm1.ann1.B8MN22 Arachis hypogaea HOM05D007044 ORTHO05D008981 4.4e-124 449.1 530 47.9
Lj7A490G62 Lonicera japonica HOM05D007044 ORTHO05D008981 4.9e-123 445.7 508 51.8
Nitab4.5_0001785g0040 Nicotiana tabacum HOM05D007044 ORTHO05D008981 2.4e-122 443.4 538 50.0
Sed0003346 Sechium edule HOM05D007044 ORTHO05D008981 7.1e-122 441.8 505 50.3
MELO3C024642.2 Cucumis melo HOM05D007044 ORTHO05D008981 2.1e-121 440.3 514 48.8
PSO170G6074 Papaver somniferum HOM05D007044 ORTHO05D008981 2.1e-121 440.3 515 49.1
Aqoxy6G00095 Aquilegia oxysepala HOM05D007044 ORTHO05D008981 1.0e-120 438.0 516 49.8
MBI03_g18677_MAGBIO Magnolia biondii HOM05D007044 ORTHO05D008981 1.3e-120 437.6 522 49.6
CAN.G10.5 Capsicum annuum HOM05D007044 ORTHO05D008981 6.6e-120 435.3 494 51.2
SGA_v2.0_scaffold13G06483 Striga asiatica HOM05D007044 ORTHO05D008981 6.6e-120 435.3 490 50.6
ClCG04G002800 Citrullus lanatus HOM05D007044 ORTHO05D008981 1.5e-119 434.1 517 50.1
PSO782G5479 Papaver somniferum HOM05D007044 ORTHO05D008981 2.5e-119 433.3 507 49.1
Dinv05984 Davidia involucrata HOM05D007044 ORTHO05D008981 9.6e-119 431.4 452 52.4
Os01g0879500 Oryza sativa ssp. japonica HOM05D007044 ORTHO05D008981 4.4e-116 422.5 511 48.9
Zm00001eb366280 Zea mays HOM05D007044 ORTHO05D008981 4.2e-114 416.0 508 48.4
Lsat_1_v5_gn_2_40340 Lactuca sativa HOM05D007044 ORTHO05D008981 2.1e-113 413.7 495 49.9
Migut.F00913 Erythranthe guttata HOM05D007044 ORTHO05D008981 4.6e-113 412.5 494 49.6
SalBow6G1252 Salvia bowleyana HOM05D007044 ORTHO05D008981 1.3e-112 411.0 529 47.1
FAN26G2478 Fragaria x ananassa HOM05D007044 ORTHO05D008981 6.6e-112 408.7 506 46.0
FAN23G2791 Fragaria x ananassa HOM05D007044 ORTHO05D008981 5.3e-109 399.1 506 46.2
Oeu063700.1 Olea europaea HOM05D007044 ORTHO05D008981 1.5e-108 397.5 540 44.8
CSS0017775 Camellia sinensis var. sinensis HOM05D007044 ORTHO05D008981 7.6e-108 395.2 429 50.8
unitig_61.g26193 Utricularia gibba HOM05D007044 ORTHO05D008981 2.4e-106 390.2 527 44.2
HPP92_022004 Vanilla planifolia HOM05D007044 ORTHO05D008981 3.2e-106 389.8 504 45.2
ATR1136G039 Amborella trichopoda HOM05D007044 ORTHO05D008981 2.1e-105 387.1 542 44.6
HanXRQChr10g0285851 Helianthus annuus HOM05D007044 ORTHO05D008981 1.3e-104 384.4 431 51.0
FAN19G0897 Fragaria x ananassa HOM05D007044 ORTHO05D008981 3.0e-104 383.3 506 45.7
FvH4_1g25860 Fragaria vesca HOM05D007044 ORTHO05D008981 3.9e-104 382.9 506 45.7
SEGI_35790 Sequoiadendron giganteum HOM05D007044 ORTHO05D008981 1.9e-103 380.6 530 43.6
MD00G1030500 Malus domestica HOM05D007044 ORTHO05D008981 2.8e-94 350.1 495 44.0
CiPaw.15G185700 Carya illinoinensis HOM05D007044 ORTHO05D008981 1.1e-87 328.2 362 51.9
Potri.004G135700 Populus trichocarpa HOM05D007044 ORTHO05D008981 1.5e-87 327.8 371 51.5
Sc16g0009910 Simmondsia chinensis HOM05D007044 ORTHO05D008981 7.4e-87 325.5 377 51.2
Atru.chr3.1445 Acer truncatum HOM05D007044 ORTHO05D008981 4.8e-86 322.8 359 51.5
Hund07191 Selenicereus undatus HOM05D007044 ORTHO05D008981 8.5e-83 312.0 381 48.3
SMO169G0173 Selaginella moellendorffii HOM05D007044 ORTHO05D008981 2.5e-82 310.5 492 40.4
Hma1.2p1_0050F.1_g029120 Hydrangea macrophylla HOM05D007044 ORTHO05D008981 7.2e-82 308.9 356 50.0
Rhsim10G0120300 Rhododendron simsii HOM05D007044 ORTHO05D008981 1.1e-79 301.6 444 43.7
CsaV3_4G029950 Cucumis sativus L. HOM05D007044 ORTHO05D008981 9.7e-79 298.5 378 47.9
Nn3g20178 Nelumbo nucifera HOM05D007044 ORTHO05D008981 2.2e-78 297.4 388 46.4
Prupe.4G288100 Prunus persica HOM05D007044 ORTHO05D008981 4.5e-76 289.7 408 44.1
ECA240G2444 Erigeron canadensis HOM05D007044 ORTHO05D008981 4.2e-74 283.1 389 46.0
Pp3c8_4410 Physcomitrium patens HOM05D007044 ORTHO05D008981 1.0e-72 278.5 546 36.8
Mapoly0010s0148 Marchantia polymorpha HOM05D007044 ORTHO05D008981 1.1e-71 275.0 748 28.7
Cpa.g.sc138.45 Carica papaya HOM05D007044 ORTHO05D008981 1.7e-67 261.2 194 63.9
PGSC0003DMG400004247 Solanum tuberosum HOM05D007044 ORTHO05D008981 2.0e-63 247.7 194 63.4
QL10p037666 Quercus lobata HOM05D007044 ORTHO05D008981 5.7e-63 246.1 192 63.0
QL10p037675 Quercus lobata HOM05D007044 ORTHO05D008981 4.8e-62 243.0 316 48.1
RcHm_v2.0_Chr3g0485001 Rosa chinensis HOM05D007044 ORTHO05D008981 4.0e-56 223.4 285 46.3
Eucgr.I00024 Eucalyptus grandis HOM05D007044 ORTHO05D008981 1.3e-54 218.4 323 44.6
CDE06G2742 Ceratophyllum demersum HOM05D007044 ORTHO05D008981 1.3e-51 208.4 182 56.0
Glyma.10G176100 Glycine max HOM05D007044 ORTHO05D008981 8.5e-51 205.7 292 42.8
AagrBONN_evm.TU.Sc2ySwM_368.1798 Anthoceros agrestis HOM05D007044 ORTHO05D008981 1.8e-48 198.0 380 35.8
CDE06G0802 Ceratophyllum demersum HOM05D003697 ORTHO05D005452 1.9e-42 177.9 297 41.8
PRCOL_00000171 Prasinoderma coloniale HOM05D007044 ORTHO05D008981 1.6e-33 148.3 519 29.1
FAN28G0850 Fragaria x ananassa HOM05D007044 ORTHO05D008981 6.4e-30 136.3 226 35.8
MCO12G445 Micromonas commoda HOM05D007044 ORTHO05D008981 2.0e-28 131.3 588 26.2
MELO3C033209.2 Cucumis melo HOM05D007044 ORTHO05D008981 6.0e-28 129.8 159 51.6
MCO15G559 Micromonas commoda HOM05D007044 ORTHO05D008981 8.6e-27 125.9 335 32.5
Cre07.g346418 Chlamydomonas reinhardtii HOM05D007044 ORTHO05D008981 6.8e-24 116.3 214 31.8
MCO07G433 Micromonas commoda HOM05D007044 ORTHO05D008981 1.2e-23 115.5 513 25.3
arahy.Tifrunner.gnm1.ann1.8K57QZ Arachis hypogaea HOM05D001339 ORTHO05D008981 2.5e-18 97.8 120 43.3
Cre03.g164650 Chlamydomonas reinhardtii HOM05D007044 ORTHO05D008981 2.0e-15 88.2 302 27.5
Cpa.g.sc138.46 Carica papaya HOM05D007044 ORTHO05D008981 2.6e-15 87.8 219 35.2
CBR_g30110 Chara braunii HOM05D007044 ORTHO05D008981 3.7e-14 84.0 144 34.0
arahy.Tifrunner.gnm1.ann1.H6TAT4 Arachis hypogaea HOM05D006665 ORTHO05D008327 4.1e-13 80.5 70 51.4
Pp3c22_6390 Physcomitrium patens HOM05D004224 ORTHO05D006437 4.6e-12 77.0 208 25.5
Mapoly0016s0035 Marchantia polymorpha HOM05D005656 ORTHO05D006437 7.8e-12 76.3 172 27.3
SMO351G0583 Selaginella moellendorffii HOM05D005656 ORTHO05D007094 5.1e-11 73.6 203 26.1
PRCOL_00004023 Prasinoderma coloniale HOM05D007044 ORTHO05D044099 1.5e-10 72.0 155 29.0
Os09g0411650 Oryza sativa ssp. japonica HOM05D005456 ORTHO05D006805 9.6e-10 69.3 195 26.7
AagrBONN_evm.TU.Sc2ySwM_117.735 Anthoceros agrestis HOM05D004224 ORTHO05D006437 8.1e-09 66.2 193 25.4
MCO12G473 Micromonas commoda HOM05D005456 ORTHO05D006805 8.1e-09 66.2 191 25.7
Actinidia16039 Actinidia chinensis HOM05D007044 ORTHO05D008981 6.8e-08 63.2 168 35.7
ATR0564G531 Amborella trichopoda HOM05D005456 ORTHO05D006805 6.8e-08 63.2 237 28.3
Actinidia33219 Actinidia chinensis HOM05D005456 ORTHO05D006805 8.9e-08 62.8 194 27.3
Atru.chr11.1727 Acer truncatum HOM05D005456 ORTHO05D006805 1.2e-07 62.4 195 29.7
Mapoly0152s0006 Marchantia polymorpha HOM05D004224 ORTHO05D001113 3.4e-07 60.8 218 23.4
PRCOL_00002664 Prasinoderma coloniale HOM05D035247 ORTHO05D001113 4.4e-07 60.5 238 26.1
THA.LOC104801808 Tarenaya hassleriana HOM05D005456 ORTHO05D006805 4.4e-07 60.5 214 25.7
Dinv16685 Davidia involucrata HOM05D005456 ORTHO05D006805 5.8e-07 60.1 193 26.4
HPP92_011000 Vanilla planifolia HOM05D005456 ORTHO05D006805 5.8e-07 60.1 133 30.8
Zm00001eb312420 Zea mays HOM05D005456 ORTHO05D006805 5.8e-07 60.1 224 24.1
Rhsim12G0132700 Rhododendron simsii HOM05D005456 ORTHO05D006805 9.9e-07 59.3 194 26.3
CDE04G1829 Ceratophyllum demersum HOM05D005234 ORTHO05D006583 1.3e-06 58.9 193 27.5
TAR622G0968 Trochodendron aralioides HOM05D005456 ORTHO05D006805 1.3e-06 58.9 194 26.3
Lsat_1_v5_gn_3_51901 Lactuca sativa HOM05D005456 ORTHO05D006805 1.7e-06 58.5 197 25.4
PRCOL_00001538 Prasinoderma coloniale HOM05D007044 ORTHO05D028567 1.7e-06 58.5 211 24.2
Zm00001eb347700 Zea mays HOM05D001443 ORTHO05D001352 1.7e-06 58.5 148 33.8
SMO144G0198 Selaginella moellendorffii HOM05D004224 ORTHO05D001113 2.2e-06 58.2 212 27.8
Gohir.A05G352700 Gossypium hirsutum HOM05D005234 ORTHO05D006583 4.9e-06 57.0 287 20.2
unitig_26.g8857 Utricularia gibba HOM05D005234 ORTHO05D006583 6.4e-06 56.6 218 24.3
Ciclev10031325m.g Citrus clementina HOM05D005456 ORTHO05D006805 8.4e-06 56.2 174 27.0
MCO05G022 Micromonas commoda HOM05D007044 ORTHO05D028567 8.4e-06 56.2 341 24.0
SMO367G1161 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 8.4e-06 56.2 197 20.8


User provided reference genes

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