Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 1.5e-179 632.9 321 100.0
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 4.9e-146 521.5 339 83.2
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 4.9e-146 521.5 339 83.2
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 5.6e-134 481.5 339 78.2
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 2.1e-133 479.6 351 76.1
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 1.7e-130 469.9 351 74.9
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 2.3e-124 449.5 351 71.5
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 6.4e-122 441.4 383 66.1
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 8.4e-122 441.0 351 69.8
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 2.1e-120 436.4 383 65.5
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 7.8e-120 434.5 384 64.8
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 2.5e-118 429.5 349 68.8
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 2.1e-117 426.4 349 68.2
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 3.1e-116 422.5 349 67.6
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 4.9e-114 415.2 348 66.7
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 1.7e-111 406.8 351 66.1
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 2.0e-107 393.3 344 66.6
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 3.4e-107 392.5 342 67.3
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 3.4e-107 392.5 344 66.3
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 3.4e-107 392.5 342 67.3
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 6.4e-106 388.3 354 62.7
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 4.6e-104 382.1 357 61.9
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 8.7e-95 351.3 259 74.1
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 4.5e-91 339.0 345 57.4
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 1.2e-88 330.9 322 58.7
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 6.0e-88 328.6 340 55.6
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 1.8e-87 327.0 366 55.7
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 1.1e-86 324.3 338 57.1
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 2.1e-85 320.1 360 52.2
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 3.7e-85 319.3 360 52.2
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 8.2e-85 318.2 337 54.6
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 1.8e-84 317.0 235 76.2
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 4.1e-84 315.8 335 56.4
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 9.0e-84 314.7 358 53.6
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 1.2e-83 314.3 346 54.0
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 1.5e-83 313.9 335 54.9
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 3.4e-83 312.8 346 54.9
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 2.9e-82 309.7 345 53.6
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 9.3e-81 304.7 246 66.7
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 1.2e-80 304.3 252 66.7
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 1.2e-80 304.3 252 66.7
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 1.2e-80 304.3 310 56.8
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 1.2e-80 304.3 310 56.8
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 1.6e-80 303.9 241 68.5
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 2.1e-80 303.5 354 51.4
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 2.7e-80 303.1 346 52.9
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 2.7e-80 303.1 327 52.3
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 3.5e-80 302.8 250 66.4
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 4.6e-80 302.4 298 58.7
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 6.1e-80 302.0 342 52.0
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 1.0e-79 301.2 260 62.3
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 1.8e-79 300.4 289 57.8
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 3.0e-79 299.7 245 64.5
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 3.9e-79 299.3 362 51.9
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 5.1e-79 298.9 245 64.5
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 5.1e-79 298.9 338 52.4
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 1.5e-78 297.4 324 55.6
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 1.9e-78 297.0 248 63.7
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 2.5e-78 296.6 333 51.4
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 3.3e-78 296.2 324 56.8
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 4.3e-78 295.8 284 57.4
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 7.4e-78 295.0 250 62.8
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 9.7e-78 294.7 316 55.4
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 9.7e-78 294.7 297 58.2
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 1.6e-77 293.9 249 62.7
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 2.8e-77 293.1 238 66.4
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 2.8e-77 293.1 246 62.6
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 4.8e-77 292.4 320 54.7
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 1.8e-76 290.4 248 64.1
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 1.8e-76 290.4 248 64.1
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 2.4e-76 290.0 293 58.0
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 2.4e-76 290.0 252 62.3
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 6.9e-76 288.5 263 60.5
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 6.9e-76 288.5 355 51.5
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 9.0e-76 288.1 330 51.8
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 9.0e-76 288.1 244 61.5
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 9.0e-76 288.1 316 52.2
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 1.5e-75 287.3 298 56.0
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 2.6e-75 286.6 344 51.7
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 2.6e-75 286.6 251 61.8
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 4.5e-75 285.8 244 61.5
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 4.5e-75 285.8 341 51.6
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 5.9e-75 285.4 251 61.8
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 7.7e-75 285.0 255 60.8
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 7.7e-75 285.0 316 53.2
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 7.7e-75 285.0 327 52.0
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 7.7e-75 285.0 294 54.8
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 3.8e-74 282.7 248 61.7
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 8.5e-74 281.6 275 56.4
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 8.5e-74 281.6 288 54.9
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 1.1e-73 281.2 226 65.0
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 1.4e-73 280.8 238 61.8
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 2.5e-73 280.0 225 66.2
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 2.5e-73 280.0 250 62.0
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 7.2e-73 278.5 250 61.6
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 9.4e-73 278.1 234 62.8
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 1.2e-72 277.7 231 64.5
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 1.6e-72 277.3 250 61.2
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 4.6e-72 275.8 282 55.7
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 6.1e-72 275.4 169 82.2
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 6.1e-72 275.4 348 50.6
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 7.9e-72 275.0 234 62.0
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 1.0e-71 274.6 223 65.9
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 2.3e-71 273.5 226 65.5
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 6.7e-71 271.9 338 47.6
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 6.7e-71 271.9 349 47.9
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 8.8e-71 271.6 167 80.2
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 1.5e-70 270.8 234 61.5
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 2.0e-70 270.4 222 64.9
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 4.3e-70 269.2 169 79.3
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 6.3e-69 265.4 168 79.8
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 1.1e-68 264.6 273 55.7
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 2.0e-67 260.4 149 83.2
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.8e-63 247.3 148 77.7
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 3.0e-63 246.5 228 59.2
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 2.0e-62 243.8 147 80.3
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 4.4e-62 242.7 245 55.5
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 4.8e-61 239.2 264 52.7
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 6.3e-61 238.8 200 63.5
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 4.1e-60 236.1 132 85.6
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 4.0e-55 219.5 330 43.6
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 7.5e-54 215.3 223 52.5
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 9.7e-54 214.9 129 77.5
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.3e-53 214.5 233 50.2
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 2.2e-53 213.8 232 50.0
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 7.2e-49 198.7 213 56.3
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 1.8e-47 194.1 103 92.2
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 1.8e-47 194.1 103 93.2
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 4.0e-47 193.0 103 91.3
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 2.0e-46 190.7 103 90.3
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 5.7e-46 189.1 103 90.3
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 5.7e-46 189.1 103 90.3
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 7.5e-46 188.7 102 90.2
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 7.5e-46 188.7 102 90.2
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 2.2e-45 187.2 103 89.3
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 6.3e-45 185.7 102 89.2
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 6.3e-45 185.7 102 89.2
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 3.1e-44 183.3 264 45.1
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 2.0e-43 180.6 265 46.0
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.6e-40 171.0 217 44.7
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 2.1e-40 170.6 217 45.6
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 6.6e-34 149.1 92 77.2
BcaC04g23398 Brassica carinata HOM05D004331 ORTHO05D004984 2.5e-33 147.1 103 73.8
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 1.2e-32 144.8 348 38.2
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 3.0e-31 140.2 75 92.0
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 3.0e-31 140.2 75 92.0
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 3.0e-31 140.2 75 92.0
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 1.7e-29 134.4 241 37.8
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 3.7e-29 133.3 118 61.0
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 5.4e-28 129.4 197 39.1
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 9.5e-25 118.6 159 45.3
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 9.5e-25 118.6 325 31.7
BolC9t53789H Brassica oleracea HOM05D004331 ORTHO05D004984 6.4e-21 105.9 56 91.1
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 8.3e-21 105.5 144 45.1
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 7.0e-20 102.4 63 73.0
SHI31863 Sapria himalayana HOM05D004331 ORTHO05D004984 9.2e-20 102.1 57 80.7
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 1.6e-16 91.3 176 33.0
VMungo0540G1227 Vigna mungo HOM05D004331 ORTHO05D004984 4.0e-15 86.7 50 80.0
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 2.6e-14 84.0 44 93.2
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 8.3e-13 79.0 68 63.2


User provided reference genes

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