Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p31590 Brassica napus HOM05D010959 ORTHO05D001770 1.7e-103 379.4 204 100.0
BolC8t50780H Brassica oleracea HOM05D010959 ORTHO05D001770 1.7e-103 379.4 204 100.0
BcaC07g39943 Brassica carinata HOM05D010959 ORTHO05D001770 1.4e-100 369.8 204 96.6
A09p49240 Brassica napus HOM05D010959 ORTHO05D001770 2.3e-100 369.0 205 96.1
BraA09t40377Z Brassica rapa HOM05D010959 ORTHO05D001770 6.8e-100 367.5 205 96.1
BcaB01g00009 Brassica carinata HOM05D010959 ORTHO05D001770 5.6e-78 294.7 205 82.9
Thhalv10006243m.g Eutrema salsugineum HOM05D010959 ORTHO05D001770 5.8e-67 258.1 208 75.5
Sp5g06240 Schrenkiella parvula HOM05D010959 ORTHO05D001770 4.9e-66 255.0 199 74.9
CARHR166420 Cardamine hirsuta HOM05D010959 ORTHO05D001770 3.2e-49 199.1 203 59.1
AT3G56260 Arabidopsis thaliana HOM05D010959 ORTHO05D001770 3.2e-41 172.6 196 58.2
BcaB02g07660 Brassica carinata HOM05D010959 ORTHO05D001770 1.0e-39 167.5 149 66.4
BcaC08g44774 Brassica carinata HOM05D010959 ORTHO05D001770 1.3e-39 167.2 149 61.7
Carub.0005s2304 Capsella rubella HOM05D010959 ORTHO05D001770 1.3e-39 167.2 216 53.7
C06p23450 Brassica napus HOM05D010959 ORTHO05D001770 1.8e-39 166.8 148 62.2
AL5G37580 Arabidopsis lyrata HOM05D010959 ORTHO05D001770 3.7e-37 159.1 192 56.8
BolC6t37519H Brassica oleracea HOM05D010959 ORTHO05D001770 3.7e-37 159.1 148 60.1
A07p22870 Brassica napus HOM05D010959 ORTHO05D001770 7.7e-35 151.4 121 65.3
BraA07t29953Z Brassica rapa HOM05D010959 ORTHO05D001770 7.7e-35 151.4 121 65.3
THA.LOC104824354 Tarenaya hassleriana HOM05D002277 ORTHO05D001770 5.3e-20 102.1 206 43.7
Sp4g22820 Schrenkiella parvula HOM05D002277 ORTHO05D001770 2.6e-19 99.8 187 46.0
A05p01740 Brassica napus HOM05D002277 ORTHO05D001770 1.0e-18 97.8 180 46.7
BraA05t19171Z Brassica rapa HOM05D002277 ORTHO05D001770 1.3e-18 97.4 180 46.1
C03p27010 Brassica napus HOM05D002277 ORTHO05D001770 2.2e-18 96.7 181 44.8
C04p02010 Brassica napus HOM05D002277 ORTHO05D001770 5.0e-18 95.5 180 45.6
A03p22770 Brassica napus HOM05D002277 ORTHO05D001770 1.1e-17 94.4 177 46.3
BraA03t11501Z Brassica rapa HOM05D002277 ORTHO05D001770 1.1e-17 94.4 177 46.3
Aa31LG10G11170 Aethionema arabicum HOM05D010959 ORTHO05D001770 1.6e-16 90.5 209 43.5
BcaB01g03537 Brassica carinata HOM05D002277 ORTHO05D001770 4.7e-16 89.0 186 43.5
CARHR135590 Cardamine hirsuta HOM05D002277 ORTHO05D001770 8.8e-15 84.7 186 43.0
Aa31LG5G19050 Aethionema arabicum HOM05D002277 ORTHO05D001770 2.0e-14 83.6 187 41.7
AL4G38320 Arabidopsis lyrata HOM05D002277 ORTHO05D001770 2.6e-14 83.2 207 40.1
Thhalv10017268m.g Eutrema salsugineum HOM05D002277 ORTHO05D001770 4.4e-14 82.4 208 41.3
BcaC02g12718 Brassica carinata HOM05D002277 ORTHO05D001770 7.5e-14 81.6 188 42.0
AT2G40475 Arabidopsis thaliana HOM05D002277 ORTHO05D001770 4.8e-13 79.0 184 41.3
BcaC01g05398 Brassica carinata HOM05D002277 ORTHO05D001770 4.8e-13 79.0 182 42.9
BolC4t21852H Brassica oleracea HOM05D002277 ORTHO05D001770 4.1e-12 75.9 162 42.6
Manes.10G005600 Manihot esculenta HOM05D002277 ORTHO05D001770 1.2e-11 74.3 90 50.0
Carub.0004s2273 Capsella rubella HOM05D002277 ORTHO05D001770 7.7e-11 71.6 180 38.3
Sed0026001 Sechium edule HOM05D002277 ORTHO05D001770 8.5e-10 68.2 183 37.7
Rhsim09G0183700 Rhododendron simsii HOM05D002277 ORTHO05D001770 1.5e-09 67.4 175 37.7
Manes.07G138400 Manihot esculenta HOM05D002277 ORTHO05D001770 1.9e-09 67.0 149 37.6
Potri.016G133200 Populus trichocarpa HOM05D002277 ORTHO05D001770 1.9e-09 67.0 164 33.5
A04p30940 Brassica napus HOM05D002277 ORTHO05D001770 4.2e-09 65.9 187 39.0
BraA04t18552Z Brassica rapa HOM05D002277 ORTHO05D001770 4.2e-09 65.9 187 39.0
Duzib268G1048 Durio zibethinus HOM05D002277 ORTHO05D001770 4.2e-09 65.9 151 35.8
Prupe.6G289800 Prunus persica HOM05D002277 ORTHO05D001770 7.2e-09 65.1 160 35.6
Duzib212G0079 Durio zibethinus HOM05D002277 ORTHO05D001770 9.4e-09 64.7 155 39.4
Sabra04G0150900 Salix brachista HOM05D002277 ORTHO05D001770 9.4e-09 64.7 176 39.2
C04p68330 Brassica napus HOM05D002277 ORTHO05D001770 1.2e-08 64.3 187 39.0
BcaC02g07305 Brassica carinata HOM05D002277 ORTHO05D001770 1.6e-08 63.9 187 40.6
BolC4t28335H Brassica oleracea HOM05D002277 ORTHO05D001770 1.6e-08 63.9 187 40.6
Potri.006G107200 Populus trichocarpa HOM05D002277 ORTHO05D001770 2.1e-08 63.5 158 32.3
Cc06_g00560 Coffea canephora HOM05D002277 ORTHO05D001770 2.7e-08 63.2 75 46.7
BcaB06g29146 Brassica carinata HOM05D002277 ORTHO05D001770 6.1e-08 62.0 193 40.4
Cc02_g05610 Coffea canephora HOM05D002277 ORTHO05D001770 6.1e-08 62.0 204 32.4
Oeu058656.1 Olea europaea HOM05D002277 ORTHO05D001770 6.1e-08 62.0 180 32.2
EL10Ac2g04267 Beta vulgaris HOM05D002277 ORTHO05D001770 8.0e-08 61.6 167 33.5
Cfa017063 Carpinus fangiana HOM05D002277 ORTHO05D001770 1.0e-07 61.2 149 36.2
CiPaw.01G304400 Carya illinoinensis HOM05D002277 ORTHO05D001770 1.4e-07 60.8 179 35.2
Gohir.D04G013500 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.4e-07 60.8 193 35.2
Gorai.012G015800 Gossypium raimondii HOM05D002277 ORTHO05D001770 1.4e-07 60.8 193 35.2
VMungo1383G3736 Vigna mungo HOM05D002277 ORTHO05D001770 1.4e-07 60.8 173 33.5
Cpa.g.sc19.91 Carica papaya HOM05D002277 ORTHO05D001770 1.8e-07 60.5 87 40.2
Cfa001229 Carpinus fangiana HOM05D002277 ORTHO05D001770 1.8e-07 60.5 56 57.1
Gohir.A05G402100 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.8e-07 60.5 194 35.1
Gorai.005G006100 Gossypium raimondii HOM05D002277 ORTHO05D001770 3.0e-07 59.7 53 58.5
Actinidia33883 Actinidia chinensis HOM05D002277 ORTHO05D001770 4.0e-07 59.3 128 36.7
Duzib128G0618 Durio zibethinus HOM05D002277 ORTHO05D001770 4.0e-07 59.3 190 38.9
CiPaw.09G218200 Carya illinoinensis HOM05D002277 ORTHO05D001770 5.2e-07 58.9 106 39.6
Ciclev10033390m.g Citrus clementina HOM05D002277 ORTHO05D001770 6.8e-07 58.5 222 35.6
CsaV3_6G002200 Cucumis sativus L. HOM05D002277 ORTHO05D001770 6.8e-07 58.5 43 72.1
Lsat_1_v5_gn_2_125460 Lactuca sativa HOM05D002277 ORTHO05D001770 6.8e-07 58.5 184 34.2
Oeu003223.1 Olea europaea HOM05D002277 ORTHO05D001770 6.8e-07 58.5 95 40.0
Gohir.D02G005400 Gossypium hirsutum HOM05D002277 ORTHO05D001770 8.8e-07 58.2 53 56.6
MELO3C019998.2 Cucumis melo HOM05D002277 ORTHO05D001770 1.2e-06 57.8 65 55.4
Potri.013G083101 Populus trichocarpa HOM05D002277 ORTHO05D001770 1.2e-06 57.8 62 51.6
Gohir.A02G005000 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.5e-06 57.4 106 42.5
QL07p032796 Quercus lobata HOM05D002277 ORTHO05D001770 1.5e-06 57.4 171 35.1
MSTRG.18959 Avicennia marina HOM05D002277 ORTHO05D001770 2.0e-06 57.0 102 39.2
Prupe.6G043800 Prunus persica HOM05D002277 ORTHO05D001770 2.0e-06 57.0 97 39.2
MSTRG.8902 Avicennia marina HOM05D002277 ORTHO05D001770 2.6e-06 56.6 160 33.1
Phvul.008G218400 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 2.6e-06 56.6 128 35.2
Sabra06G0083400 Salix brachista HOM05D002277 ORTHO05D001770 2.6e-06 56.6 158 31.6
A09p66660 Brassica napus HOM05D010829 ORTHO05D001770 3.4e-06 56.2 48 56.2
RcHm_v2.0_Chr3g0460991 Rosa chinensis HOM05D002277 ORTHO05D001770 3.4e-06 56.2 146 31.5
Thecc.10G174900 Theobroma cacao HOM05D002277 ORTHO05D001770 3.4e-06 56.2 189 32.8
Hma1.2p1_1052F.1_g252370 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 4.4e-06 55.8 202 32.2
Nitab4.5_0004650g0010 Nicotiana tabacum HOM05D002277 ORTHO05D001770 4.4e-06 55.8 188 30.9
ATR0681G220 Amborella trichopoda HOM05D002277 ORTHO05D001770 5.7e-06 55.5 59 59.3
Aqoxy85s002 Aquilegia oxysepala HOM05D002277 ORTHO05D001770 5.7e-06 55.5 184 38.6
ClCG11G005770 Citrullus lanatus HOM05D002277 ORTHO05D001770 5.7e-06 55.5 65 52.3
Nitab4.5_0000263g0230 Nicotiana tabacum HOM05D002277 ORTHO05D001770 5.7e-06 55.5 188 30.3
DCAR_015348 Daucus carota HOM05D002277 ORTHO05D001770 7.5e-06 55.1 117 32.5
Nn2g13334 Nelumbo nucifera HOM05D002277 ORTHO05D001770 7.5e-06 55.1 95 43.2
THA.LOC104816170 Tarenaya hassleriana HOM05D002277 ORTHO05D001770 7.5e-06 55.1 103 40.8
Rhsim03G0150300 Rhododendron simsii HOM05D002277 ORTHO05D001770 9.8e-06 54.7 56 55.4
VMungo0647G0912 Vigna mungo HOM05D002277 ORTHO05D001770 9.8e-06 54.7 88 43.2


User provided reference genes

Program Settings