Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p31530 Brassica napus HOM05D002744 ORTHO05D008989 2.4e-105 385.6 199 100.0
BcaC07g39936 Brassica carinata HOM05D002744 ORTHO05D008989 4.8e-74 281.6 144 100.0
A09p49190 Brassica napus HOM05D002744 ORTHO05D008989 1.4e-73 280.0 144 99.3
BraA09t40372Z Brassica rapa HOM05D002744 ORTHO05D008989 1.4e-73 280.0 144 99.3
BcaB08g34630 Brassica carinata HOM05D002744 ORTHO05D008989 3.8e-71 271.9 142 97.9
Sp5g06290 Schrenkiella parvula HOM05D002744 ORTHO05D008989 5.1e-68 261.5 142 93.7
Thhalv10006252m.g Eutrema salsugineum HOM05D002744 ORTHO05D008989 2.8e-66 255.8 142 92.3
Carub.0005s2299 Capsella rubella HOM05D002744 ORTHO05D008989 1.5e-64 250.0 148 85.8
AT3G56210 Arabidopsis thaliana HOM05D002744 ORTHO05D008989 1.4e-62 243.4 185 70.8
AL5G37530 Arabidopsis lyrata HOM05D002744 ORTHO05D008989 1.9e-62 243.0 143 86.7
THA.LOC104824346 Tarenaya hassleriana HOM05D002744 ORTHO05D008989 2.4e-57 226.1 142 78.9
CARHR166360 Cardamine hirsuta HOM05D002744 ORTHO05D008989 3.4e-56 222.2 128 85.9
BolC8t50775H Brassica oleracea HOM05D002744 ORTHO05D008989 1.0e-55 220.7 110 100.0
Eucgr.G03110 Eucalyptus grandis HOM05D002744 ORTHO05D008989 3.0e-52 209.1 142 76.1
Ciclev10032836m.g Citrus clementina HOM05D002744 ORTHO05D008989 1.5e-51 206.8 142 74.6
CiPaw.02G197300 Carya illinoinensis HOM05D002744 ORTHO05D008989 1.7e-50 203.4 149 70.5
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 2.2e-50 203.0 132 77.3
Haze_17321 Corylus avellana HOM05D002744 ORTHO05D008989 2.8e-50 202.6 149 69.1
TAR369G0133 Trochodendron aralioides HOM05D000826 ORTHO05D001831 3.7e-50 202.2 146 69.2
GSVIVG01032723001 Vitis vinifera HOM05D002744 ORTHO05D008989 6.3e-50 201.4 148 70.9
PGR142G3983 Punica granatum HOM05D002744 ORTHO05D008989 1.8e-49 199.9 142 73.9
CANSAT56G2966 Cannabis sativa HOM05D002744 ORTHO05D008989 3.1e-49 199.1 151 68.9
Gohir.D04G071200 Gossypium hirsutum HOM05D002744 ORTHO05D008989 5.3e-49 198.4 148 68.2
Rhsim09G0182800 Rhododendron simsii HOM05D002744 ORTHO05D008989 9.1e-49 197.6 143 73.4
Duzib114G0765 Durio zibethinus HOM05D002744 ORTHO05D008989 1.6e-48 196.8 150 68.7
Nn2g11068 Nelumbo nucifera HOM05D002744 ORTHO05D008989 3.5e-48 195.7 148 67.6
Thecc.10G007100 Theobroma cacao HOM05D002744 ORTHO05D008989 3.5e-48 195.7 148 68.2
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 5.9e-48 194.9 128 76.6
Gohir.A05G332500 Gossypium hirsutum HOM05D002744 ORTHO05D008989 2.2e-47 193.0 150 67.3
MD07G1229300 Malus domestica HOM05D002744 ORTHO05D008989 3.8e-47 192.2 152 67.1
QL08p064284 Quercus lobata HOM05D002744 ORTHO05D008989 3.8e-47 192.2 149 67.1
Dinv21809 Davidia involucrata HOM05D002744 ORTHO05D008989 6.5e-47 191.4 141 70.9
Peaxi162Scf00284g00123 Petunia axillaris HOM05D002744 ORTHO05D008989 6.5e-47 191.4 144 70.1
Cc02_g05720 Coffea canephora HOM05D002744 ORTHO05D008989 1.1e-46 190.7 158 65.2
Glyma.11G234700 Glycine max HOM05D002744 ORTHO05D008989 2.5e-46 189.5 147 66.7
BcaB01g00016 Brassica carinata HOM05D002744 ORTHO05D008989 3.2e-46 189.1 97 100.0
PSO017G6389 Papaver somniferum HOM05D002744 ORTHO05D008989 4.2e-46 188.7 199 51.3
AUR62022976 Chenopodium quinoa HOM05D002744 ORTHO05D008989 5.5e-46 188.3 149 67.8
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 7.2e-46 188.0 152 62.5
MD01G1161400 Malus domestica HOM05D002744 ORTHO05D008989 9.4e-46 187.6 154 66.9
EL10Ac2g04293 Beta vulgaris HOM05D002744 ORTHO05D008989 1.6e-45 186.8 150 67.3
PSO170G0776 Papaver somniferum HOM05D002744 ORTHO05D008989 1.6e-45 186.8 199 50.8
CsaV3_5G010720 Cucumis sativus L. HOM05D002744 ORTHO05D008989 2.1e-45 186.4 184 55.4
Hma1.2p1_1240F.1_g269630 Hydrangea macrophylla HOM05D002744 ORTHO05D008989 2.1e-45 186.4 119 78.2
Lj1A963T49 Lonicera japonica HOM05D002744 ORTHO05D008989 2.1e-45 186.4 112 80.4
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 3.6e-45 185.7 154 63.6
Glyma.18G022300 Glycine max HOM05D002744 ORTHO05D008989 3.6e-45 185.7 147 66.0
Sed0024728 Sechium edule HOM05D002744 ORTHO05D008989 6.1e-45 184.9 184 55.4
EL10Ac2g04295 Beta vulgaris HOM05D002744 ORTHO05D008989 8.0e-45 184.5 144 68.8
RcHm_v2.0_Chr1g0371481 Rosa chinensis HOM05D002744 ORTHO05D008989 1.0e-44 184.1 154 65.6
TWI38G2197 Tripterygium wilfordii HOM05D002744 ORTHO05D008989 1.0e-44 184.1 122 75.4
Actinidia00986 Actinidia chinensis HOM05D002744 ORTHO05D008989 1.4e-44 183.7 143 67.8
arahy.Tifrunner.gnm1.ann1.HIE7A8 Arachis hypogaea HOM05D002744 ORTHO05D008989 1.8e-44 183.3 147 63.3
FvH4_7g25501 Fragaria vesca HOM05D002744 ORTHO05D008989 1.8e-44 183.3 152 63.2
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.8e-44 183.3 152 63.2
Atru.BG.256.p Acer truncatum HOM05D002744 ORTHO05D008989 2.3e-44 183.0 111 81.1
arahy.Tifrunner.gnm1.ann1.N80L0Z Arachis hypogaea HOM05D002744 ORTHO05D008989 2.3e-44 183.0 147 63.3
Gorai.012G080100 Gossypium raimondii HOM05D002744 ORTHO05D008989 2.3e-44 183.0 161 64.0
Phvul.001G248100 Phaseolus vulgaris HOM05D002744 ORTHO05D008989 4.0e-44 182.2 147 64.6
arahy.Tifrunner.gnm1.ann1.B5C26Y Arachis hypogaea HOM05D002744 ORTHO05D008989 5.2e-44 181.8 147 62.6
Hma1.2p1_1240F.1_g269640 Hydrangea macrophylla HOM05D002744 ORTHO05D008989 5.2e-44 181.8 117 77.8
Sopen02g021690 Solanum pennellii HOM05D002744 ORTHO05D008989 1.5e-43 180.3 144 66.0
Manes.10G008400 Manihot esculenta HOM05D002744 ORTHO05D008989 2.0e-43 179.9 149 62.4
Nitab4.5_0000928g0050 Nicotiana tabacum HOM05D002744 ORTHO05D008989 2.0e-43 179.9 142 64.8
Potri.008G075600 Populus trichocarpa HOM05D002744 ORTHO05D008989 2.0e-43 179.9 131 71.0
Hund13513 Selenicereus undatus HOM05D002744 ORTHO05D008989 2.0e-43 179.9 141 67.4
CDE02G4284 Ceratophyllum demersum HOM05D002744 ORTHO05D008989 5.7e-43 178.3 132 68.9
Lj6g0011522 Lotus japonicus HOM05D002744 ORTHO05D008989 5.7e-43 178.3 149 65.1
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 5.7e-43 178.3 135 66.7
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 9.7e-43 177.6 138 63.8
HanXRQChr17g0560791 Helianthus annuus HOM05D002744 ORTHO05D008989 9.7e-43 177.6 152 61.8
TPR.G28641 Trifolium pratense HOM05D002744 ORTHO05D008989 1.3e-42 177.2 147 64.6
Lju41C22T0 Lonicera japonica HOM05D002744 ORTHO05D008989 1.7e-42 176.8 117 75.2
AUR62012334 Chenopodium quinoa HOM05D002744 ORTHO05D008989 2.8e-42 176.0 117 74.4
Ca_15179_v3 Cicer arietinum L. HOM05D002744 ORTHO05D008989 4.8e-42 175.3 147 61.9
Lj8C58T1 Lonicera japonica HOM05D002744 ORTHO05D008989 4.8e-42 175.3 117 74.4
Os03g0665800 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D008989 4.8e-42 175.3 126 69.0
Nitab4.5_0000263g0100 Nicotiana tabacum HOM05D002744 ORTHO05D008989 6.3e-42 174.9 113 73.5
vmacro09984 Vaccinium macrocarpon HOM05D002744 ORTHO05D008989 6.3e-42 174.9 176 58.0
DCAR_011891 Daucus carota HOM05D002744 ORTHO05D008989 1.4e-41 173.7 113 77.0
Sabra08G0056200 Salix brachista HOM05D002744 ORTHO05D008989 1.8e-41 173.3 131 66.4
BcaB01g00017 Brassica carinata HOM05D002744 ORTHO05D008989 7.0e-41 171.4 112 83.9
ATR0681G046 Amborella trichopoda HOM05D000826 ORTHO05D008989 9.1e-41 171.0 149 61.7
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 1.6e-40 170.2 108 77.8
ECA233G4001 Erigeron canadensis HOM05D002744 ORTHO05D008989 1.6e-40 170.2 153 58.8
Migut.A01076 Erythranthe guttata HOM05D002744 ORTHO05D008989 1.6e-40 170.2 126 67.5
SalBow3G4547 Salvia bowleyana HOM05D002744 ORTHO05D008989 1.6e-40 170.2 129 65.9
HPP92_013966 Vanilla planifolia HOM05D002744 ORTHO05D008989 7.7e-40 167.9 120 68.3
Lalb_Chr08g0231351 Lupinus albus HOM05D002744 ORTHO05D008989 1.0e-39 167.5 147 61.2
MSTRG.12212 Avicennia marina HOM05D002744 ORTHO05D008989 1.3e-39 167.2 169 53.8
Medtr3g072120 Medicago truncatula HOM05D002744 ORTHO05D008989 6.5e-39 164.9 148 60.8
Oeu026180.1 Olea europaea HOM05D002744 ORTHO05D008989 1.6e-37 160.2 147 58.5
Lsat_1_v5_gn_8_13401 Lactuca sativa HOM05D002744 ORTHO05D008989 2.1e-37 159.8 113 69.0
VMungo1383G3724 Vigna mungo HOM05D002744 ORTHO05D008989 6.1e-37 158.3 115 67.8
unitig_32.g11706 Utricularia gibba HOM05D002744 ORTHO05D008989 1.5e-35 153.7 117 64.1
unitig_33.g30211 Utricularia gibba HOM05D002744 ORTHO05D008989 1.5e-35 153.7 117 64.1
SEGI_09795 Sequoiadendron giganteum HOM05D002744 ORTHO05D008989 9.8e-35 151.0 147 54.4
SGA_v2.0_scaffold36G14267 Striga asiatica HOM05D002744 ORTHO05D008989 8.3e-34 147.9 129 62.0
SEGI_38813 Sequoiadendron giganteum HOM05D002744 ORTHO05D008989 1.8e-33 146.7 108 65.7
Aa31LG10G11120 Aethionema arabicum HOM05D002744 ORTHO05D008989 1.0e-31 141.0 76 94.7
Sc10g0002800 Simmondsia chinensis HOM05D002744 ORTHO05D008989 3.0e-28 129.4 131 56.5
Psat5g130160 Pisum sativum HOM05D002744 ORTHO05D008989 3.4e-27 125.9 102 64.7
Prupe.2G259500 Prunus persica HOM05D002744 ORTHO05D008989 5.7e-27 125.2 84 76.2
MELO3C020107.2 Cucumis melo HOM05D002744 ORTHO05D008989 7.5e-27 124.8 102 58.8
ClCG07G004800 Citrullus lanatus HOM05D002744 ORTHO05D008989 9.8e-27 124.4 93 71.0
PGSC0003DMG400010239 Solanum tuberosum HOM05D002744 ORTHO05D008989 8.3e-26 121.3 76 80.3
Solyc02g076790.4 Solanum lycopersicum HOM05D002744 ORTHO05D008989 1.8e-25 120.2 76 78.9
TAR623G0678 Trochodendron aralioides HOM05D002744 ORTHO05D008989 1.2e-24 117.5 78 78.2
C06p23580 Brassica napus HOM05D002744 ORTHO05D008989 2.0e-24 116.7 62 90.3
Mapoly0001s0439 Marchantia polymorpha HOM05D002744 ORTHO05D008989 3.8e-23 112.5 114 50.9
Gohir.A10G240750 Gossypium hirsutum HOM05D002744 ORTHO05D008989 1.9e-22 110.2 81 70.4
CDE01G0559 Ceratophyllum demersum HOM05D002744 ORTHO05D008989 2.3e-20 103.2 71 71.8
Hma1.2p1_0322F.1_g124790 Hydrangea macrophylla HOM05D002744 ORTHO05D008989 3.2e-17 92.8 112 48.2
Pp3c8_1670 Physcomitrium patens HOM05D002744 ORTHO05D008989 3.2e-17 92.8 142 40.1
Psat5g125520 Pisum sativum HOM05D002744 ORTHO05D008989 4.4e-11 72.4 48 68.8
SMO147G0318 Selaginella moellendorffii HOM05D002744 ORTHO05D008989 6.4e-10 68.6 109 37.6


User provided reference genes

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