Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 1.0e-41 172.9 83 100.0
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 2.5e-40 168.3 83 97.6
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 8.8e-38 159.8 83 91.6
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 8.8e-38 159.8 83 91.6
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 2.0e-37 158.7 83 91.6
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 2.0e-37 158.7 83 91.6
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 3.3e-37 157.9 83 91.6
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 3.3e-37 157.9 83 91.6
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 5.7e-37 157.1 85 91.8
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 1.4e-32 142.5 86 82.6
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 1.4e-30 136.0 84 81.0
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 3.0e-30 134.8 84 79.8
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 3.0e-30 134.8 84 79.8
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 3.9e-30 134.4 84 78.6
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 3.9e-30 134.4 84 78.6
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 1.1e-29 132.9 88 75.0
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 9.7e-29 129.8 84 77.4
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 3.7e-28 127.9 88 72.7
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 3.7e-28 127.9 88 72.7
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 6.3e-28 127.1 88 71.6
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 6.3e-28 127.1 88 71.6
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 8.2e-28 126.7 88 70.5
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.1e-27 126.3 88 71.6
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 4.1e-27 124.4 88 70.5
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 1.6e-26 122.5 83 69.9
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 1.6e-26 122.5 83 69.9
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 5.9e-26 120.6 89 68.5
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 7.7e-26 120.2 83 68.7
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 7.7e-26 120.2 83 68.7
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 7.7e-26 120.2 83 69.9
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 7.7e-26 120.2 83 69.9
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 8.5e-25 116.7 91 62.6
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 9.4e-24 113.2 90 62.2
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 9.4e-24 113.2 84 70.2
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.6e-23 112.5 89 62.9
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 2.7e-23 111.7 90 61.1
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 4.0e-22 107.8 90 58.9
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 4.0e-22 107.8 90 58.9
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 4.0e-22 107.8 90 58.9
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 4.0e-22 107.8 90 58.9
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 1.5e-21 105.9 85 64.7
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 2.0e-21 105.5 89 59.6
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 2.0e-21 105.5 88 59.1
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 2.6e-21 105.1 88 60.2
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 5.7e-21 104.0 88 59.1
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 7.5e-21 103.6 89 58.4
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 1.7e-20 102.4 82 59.8
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 3.7e-20 101.3 88 56.8
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 4.8e-20 100.9 88 58.0
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 8.2e-20 100.1 86 59.3
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 1.1e-19 99.8 88 58.0
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 1.4e-19 99.4 88 54.5
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 1.4e-19 99.4 86 59.3
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 1.8e-19 99.0 90 55.6
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 1.8e-19 99.0 84 57.1
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 3.1e-19 98.2 81 55.6
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 3.1e-19 98.2 88 54.5
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 4.1e-19 97.8 83 63.9
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 5.3e-19 97.4 88 55.7
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 7.0e-19 97.1 80 61.2
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 9.1e-19 96.7 88 51.1
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 1.2e-18 96.3 88 54.5
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 1.6e-18 95.9 89 56.2
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 2.0e-18 95.5 88 52.3
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 2.7e-18 95.1 88 54.5
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 2.7e-18 95.1 88 54.5
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 2.7e-18 95.1 80 53.8
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 4.5e-18 94.4 88 51.1
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 5.9e-18 94.0 88 53.4
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 5.9e-18 94.0 88 51.1
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 5.9e-18 94.0 90 51.1
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 5.9e-18 94.0 88 53.4
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 7.7e-18 93.6 88 52.3
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 7.7e-18 93.6 83 61.4
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 7.7e-18 93.6 88 53.4
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.0e-17 93.2 87 46.0
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 1.0e-17 93.2 80 52.5
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 1.0e-17 93.2 89 51.7
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 1.3e-17 92.8 89 53.9
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 1.7e-17 92.4 83 56.6
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 1.7e-17 92.4 89 52.8
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 1.7e-17 92.4 89 53.9
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 2.2e-17 92.0 91 54.9
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.2e-17 92.0 88 50.0
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 2.2e-17 92.0 88 50.0
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 2.2e-17 92.0 90 48.9
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 2.2e-17 92.0 81 54.3
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 2.2e-17 92.0 83 54.2
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 2.2e-17 92.0 88 53.4
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 2.9e-17 91.7 88 51.1
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.9e-17 91.7 87 51.7
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 2.9e-17 91.7 83 54.2
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 2.9e-17 91.7 88 52.3
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.8e-17 91.3 86 47.7
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 3.8e-17 91.3 88 51.1
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.8e-17 91.3 87 54.0
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.8e-17 91.3 87 52.9
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 3.8e-17 91.3 87 52.9
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 3.8e-17 91.3 90 52.2
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 5.0e-17 90.9 82 51.2
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 5.0e-17 90.9 87 54.0
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 5.0e-17 90.9 87 54.0
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 5.0e-17 90.9 89 51.7
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 6.5e-17 90.5 88 54.5
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 8.5e-17 90.1 85 49.4
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 8.5e-17 90.1 87 51.7
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 8.5e-17 90.1 85 51.8
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 8.5e-17 90.1 83 54.2
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 8.5e-17 90.1 89 49.4
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 8.5e-17 90.1 80 52.5
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 1.1e-16 89.7 94 48.9
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 1.1e-16 89.7 92 50.0
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 1.5e-16 89.4 82 58.5
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 1.9e-16 89.0 77 58.4
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 1.9e-16 89.0 82 51.2
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 1.9e-16 89.0 87 51.7
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 1.9e-16 89.0 90 52.2
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 2.5e-16 88.6 84 54.8
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 2.5e-16 88.6 88 50.0
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 2.5e-16 88.6 88 50.0
C05p20030 Brassica napus HOM05D003903 ORTHO05D004828 3.2e-16 88.2 42 95.2
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.2e-16 88.2 85 45.9
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 3.2e-16 88.2 90 51.1
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 3.2e-16 88.2 84 53.6
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 3.2e-16 88.2 88 53.4
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 3.2e-16 88.2 88 53.4
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 4.2e-16 87.8 88 53.4
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 4.2e-16 87.8 80 50.0
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 5.5e-16 87.4 83 50.6
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 5.5e-16 87.4 89 50.6
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 7.2e-16 87.0 88 54.5
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 7.2e-16 87.0 90 46.7
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 7.2e-16 87.0 94 52.1
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 9.4e-16 86.7 89 48.3
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 1.2e-15 86.3 77 54.5
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 1.2e-15 86.3 81 58.0
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 1.6e-15 85.9 85 50.6
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 1.6e-15 85.9 82 57.3
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.6e-15 85.9 84 51.2
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 2.1e-15 85.5 83 51.8
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 2.1e-15 85.5 94 47.9
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 2.1e-15 85.5 89 47.2
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 2.1e-15 85.5 85 51.8
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 6.1e-15 84.0 89 48.3
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 6.1e-15 84.0 88 50.0
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 6.1e-15 84.0 88 50.0
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 6.1e-15 84.0 91 47.3
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 1.4e-14 82.8 89 48.3
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 1.4e-14 82.8 89 47.2
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 1.4e-14 82.8 90 45.6
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 5.2e-14 80.9 89 46.1
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 5.2e-14 80.9 81 49.4
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.5e-13 79.3 84 50.0
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 2.0e-13 79.0 86 48.8
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 4.4e-13 77.8 73 50.7
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 7.5e-13 77.0 72 50.0
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.3e-12 76.3 72 50.0
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.3e-12 76.3 72 50.0
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.3e-12 76.3 72 52.8
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 2.2e-12 75.5 62 56.5
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.4e-11 72.0 72 45.8


User provided reference genes

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