Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p31350 Brassica napus HOM05D005937 ORTHO05D008151 0.0e+00 1785.4 876 100.0
A09p48990 Brassica napus HOM05D005937 ORTHO05D008151 0.0e+00 1726.8 877 96.8
BraA09t40354Z Brassica rapa HOM05D005937 ORTHO05D008151 0.0e+00 1726.8 877 96.8
Sp5g06500 Schrenkiella parvula HOM05D005937 ORTHO05D008151 0.0e+00 1642.5 891 91.4
Thhalv10005783m.g Eutrema salsugineum HOM05D005937 ORTHO05D008151 0.0e+00 1615.9 892 90.1
AT3G56040 Arabidopsis thaliana HOM05D005937 ORTHO05D008151 0.0e+00 1556.2 889 87.3
Carub.0005s2277 Capsella rubella HOM05D005937 ORTHO05D008151 0.0e+00 1555.8 887 86.8
AL5G37310 Arabidopsis lyrata HOM05D005937 ORTHO05D008151 0.0e+00 1554.7 895 86.5
CARHR166110 Cardamine hirsuta HOM05D005937 ORTHO05D008151 0.0e+00 1551.2 887 87.0
Aa31LG10G10960 Aethionema arabicum HOM05D005937 ORTHO05D008151 0.0e+00 1481.1 894 82.6
THA.LOC104824329 Tarenaya hassleriana HOM05D005937 ORTHO05D008151 0.0e+00 1336.2 880 74.5
THA.LOC104811372 Tarenaya hassleriana HOM05D005937 ORTHO05D008151 0.0e+00 1329.7 892 73.3
Atru.chr12.85 Acer truncatum HOM05D005937 ORTHO05D008151 0.0e+00 1169.8 884 66.0
Potri.010G185800 Populus trichocarpa HOM05D005937 ORTHO05D008151 0.0e+00 1169.1 874 65.9
Duzib114G0783 Durio zibethinus HOM05D005937 ORTHO05D008151 0.0e+00 1147.9 888 64.8
Thecc.10G012700 Theobroma cacao HOM05D005937 ORTHO05D008151 0.0e+00 1123.6 886 63.8
GSVIVG01032777001 Vitis vinifera HOM05D005937 ORTHO05D008151 0.0e+00 1123.2 870 63.9
Manes.10G010100 Manihot esculenta HOM05D005937 ORTHO05D008151 0.0e+00 1121.7 885 63.6
Sabra10G0143100 Salix brachista HOM05D005937 ORTHO05D008151 0.0e+00 1120.9 934 60.0
Haze_17256 Corylus avellana HOM05D005937 ORTHO05D008151 0.0e+00 1120.5 825 67.4
FvH4_7g24830 Fragaria vesca HOM05D005937 ORTHO05D008151 0.0e+00 1119.4 871 63.5
Ciclev10030686m.g Citrus clementina HOM05D005937 ORTHO05D008151 0.0e+00 1119.0 881 63.7
FAN01G2918 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1117.8 867 63.8
RcHm_v2.0_Chr1g0370701 Rosa chinensis HOM05D005937 ORTHO05D008151 0.0e+00 1117.4 875 63.3
CiPaw.02G194600 Carya illinoinensis HOM05D005937 ORTHO05D008151 0.0e+00 1115.5 851 65.3
FAN06G2004 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1115.5 868 63.6
TWI09G1402 Tripterygium wilfordii HOM05D005937 ORTHO05D008151 0.0e+00 1109.0 879 63.4
FAN03G2902 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1106.7 885 62.3
Cpa.g.sc19.149 Carica papaya HOM05D005937 ORTHO05D008151 0.0e+00 1105.9 924 61.1
MD07G1224900 Malus domestica HOM05D005937 ORTHO05D008151 0.0e+00 1104.0 879 63.3
CSS0046957 Camellia sinensis var. sinensis HOM05D005937 ORTHO05D008151 0.0e+00 1094.7 902 62.4
Actinidia00667 Actinidia chinensis HOM05D005937 ORTHO05D008151 0.0e+00 1093.2 873 64.1
Migut.F01477 Erythranthe guttata HOM05D005937 ORTHO05D008151 0.0e+00 1091.3 880 63.8
QL08p063536 Quercus lobata HOM05D005937 ORTHO05D008151 0.0e+00 1090.5 885 62.7
Eucgr.J00183 Eucalyptus grandis HOM05D005937 ORTHO05D008151 0.0e+00 1084.7 848 63.9
ClCG11G006010 Citrullus lanatus HOM05D005937 ORTHO05D008151 0.0e+00 1083.6 821 64.4
TAR633G1521 Trochodendron aralioides HOM05D005937 ORTHO05D008151 0.0e+00 1082.4 875 62.7
Phvul.001G244900 Phaseolus vulgaris HOM05D005937 ORTHO05D008151 0.0e+00 1081.2 868 63.2
CsaV3_6G001960 Cucumis sativus L. HOM05D005937 ORTHO05D008151 0.0e+00 1080.5 823 64.6
CANSAT56G2579 Cannabis sativa HOM05D005937 ORTHO05D008151 0.0e+00 1078.2 882 61.9
Glyma.11G231700 Glycine max HOM05D005937 ORTHO05D008151 0.0e+00 1078.2 867 62.4
Ah.16g103770 Amaranthus hybridus HOM05D005937 ORTHO05D008151 0.0e+00 1076.2 885 61.5
Nn2g10945 Nelumbo nucifera HOM05D005937 ORTHO05D008151 6.0e-312 1074.3 843 64.1
Hma1.2p1_0523F.1_g172080 Hydrangea macrophylla HOM05D005937 ORTHO05D008151 1.2e-311 1073.2 817 64.4
Gohir.A10G239000 Gossypium hirsutum HOM05D005937 ORTHO05D008151 2.4e-311 1072.0 867 62.6
EL10Ac2g04871 Beta vulgaris HOM05D005937 ORTHO05D008151 3.0e-311 1071.6 928 59.3
Gorai.011G291300 Gossypium raimondii HOM05D005937 ORTHO05D008151 9.0e-311 1070.1 880 61.8
Prupe.2G253500 Prunus persica HOM05D005937 ORTHO05D008151 1.6e-310 1069.3 873 62.0
Duzib106G1087 Durio zibethinus HOM05D005937 ORTHO05D008151 2.6e-310 1068.5 886 61.3
Hund15900 Selenicereus undatus HOM05D005937 ORTHO05D008151 3.5e-310 1068.1 870 61.7
Nitab4.5_0000058g0250 Nicotiana tabacum HOM05D005937 ORTHO05D008151 1.7e-309 1065.8 881 61.3
Rhsim09G0179300 Rhododendron simsii HOM05D005937 ORTHO05D008151 8.5e-309 1063.5 874 62.9
Lalb_Chr23g0277021 Lupinus albus HOM05D005937 ORTHO05D008151 4.2e-308 1061.2 894 60.6
Sed0020446 Sechium edule HOM05D005937 ORTHO05D008151 6.1e-307 1057.4 818 64.2
Medtr3g071440 Medicago truncatula HOM05D005937 ORTHO05D008151 1.0e-306 1056.6 876 62.8
Nitab4.5_0000969g0030 Nicotiana tabacum HOM05D005937 ORTHO05D008151 1.0e-306 1056.6 883 60.6
Lj6g0019628 Lotus japonicus HOM05D005937 ORTHO05D008151 4.0e-306 1054.7 842 62.9
arahy.Tifrunner.gnm1.ann1.0WF02T Arachis hypogaea HOM05D005937 ORTHO05D008151 5.2e-306 1054.3 822 64.1
Glyma.18G025500 Glycine max HOM05D005937 ORTHO05D008151 5.2e-306 1054.3 866 62.8
arahy.Tifrunner.gnm1.ann1.6RBS9T Arachis hypogaea HOM05D005937 ORTHO05D008151 3.4e-305 1051.6 822 64.0
Solyc06g051080.4 Solanum lycopersicum HOM05D005937 ORTHO05D008151 2.8e-304 1048.5 900 59.3
Ca_15144_v3 Cicer arietinum L. HOM05D005937 ORTHO05D008151 1.1e-303 1046.6 839 63.6
CAN.G19.18 Capsicum annuum HOM05D005937 ORTHO05D008151 1.4e-303 1046.2 877 60.7
Sopen06g016900 Solanum pennellii HOM05D005937 ORTHO05D008151 3.1e-303 1045.0 883 60.1
VMungo1383G1379 Vigna mungo HOM05D005937 ORTHO05D008151 3.1e-303 1045.0 859 62.2
Psat5g130440 Pisum sativum HOM05D005937 ORTHO05D008151 7.0e-303 1043.9 826 63.9
TPR.G10616 Trifolium pratense HOM05D005937 ORTHO05D008151 2.1e-299 1032.3 870 60.8
Lj1C959G18 Lonicera japonica HOM05D005937 ORTHO05D008151 2.2e-296 1022.3 763 65.5
AUR62012278 Chenopodium quinoa HOM05D005937 ORTHO05D008151 1.1e-295 1020.0 820 61.3
Lsat_1_v5_gn_2_123720 Lactuca sativa HOM05D005937 ORTHO05D008151 2.4e-295 1018.8 836 61.8
vmacro10023 Vaccinium macrocarpon HOM05D005937 ORTHO05D008151 4.1e-295 1018.1 909 59.6
Oeu011112.1 Olea europaea HOM05D005937 ORTHO05D008151 2.3e-293 1012.3 966 55.2
HanXRQChr07g0203141 Helianthus annuus HOM05D005937 ORTHO05D008151 1.9e-292 1009.2 883 58.9
Aqoxy4G02431 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 8.0e-291 1003.8 822 61.4
ECA238G3710 Erigeron canadensis HOM05D005937 ORTHO05D008151 1.8e-290 1002.7 873 58.9
PSO170G3027 Papaver somniferum HOM05D005937 ORTHO05D008151 4.0e-290 1001.5 847 59.5
PSO017G4998 Papaver somniferum HOM05D005937 ORTHO05D008151 8.9e-290 1000.3 847 59.4
unitig_60.g25670 Utricularia gibba HOM05D005937 ORTHO05D008151 7.5e-289 997.3 906 57.7
DCAR_024814 Daucus carota HOM05D005937 ORTHO05D008151 6.4e-288 994.2 816 62.5
FAN10G1632 Fragaria x ananassa HOM05D005937 ORTHO05D008151 8.3e-288 993.8 888 57.7
Cfa001293 Carpinus fangiana HOM05D005937 ORTHO05D008151 9.5e-284 980.3 697 68.1
PGR044G1548 Punica granatum HOM05D005937 ORTHO05D008151 1.4e-282 976.5 875 58.3
Dinv21757 Davidia involucrata HOM05D005937 ORTHO05D008151 2.3e-277 959.1 894 58.1
AUR62022920 Chenopodium quinoa HOM05D005937 ORTHO05D008151 5.1e-277 958.0 741 62.9
ATR0174G021 Amborella trichopoda HOM05D005937 ORTHO05D008151 3.8e-272 941.8 849 56.1
Cc02_g06180 Coffea canephora HOM05D005937 ORTHO05D008151 1.1e-271 940.3 643 69.4
Os05g0468600 Oryza sativa ssp. japonica HOM05D005937 ORTHO05D008151 1.7e-269 932.9 802 56.5
Peaxi162Scf00284g00620 Petunia axillaris HOM05D005937 ORTHO05D008151 1.5e-268 929.9 848 57.7
Gohir.D10G250900 Gossypium hirsutum HOM05D005937 ORTHO05D008151 2.6e-265 919.1 762 62.3
MELO3C008313.2 Cucumis melo HOM05D005937 ORTHO05D008151 3.4e-265 918.7 698 65.6
Zm00001eb351780 Zea mays HOM05D005937 ORTHO05D008151 8.4e-264 914.1 855 54.5
COL.COLO4_25772 Corchorus olitorius HOM05D005937 ORTHO05D008151 4.0e-258 895.2 791 59.0
MD01G1156200 Malus domestica HOM05D005937 ORTHO05D008151 1.3e-253 880.2 700 63.0
MBI15_g40751_MAGBIO Magnolia biondii HOM05D005937 ORTHO05D008151 5.6e-252 874.8 904 52.2
Sc10g0002520 Simmondsia chinensis HOM05D005937 ORTHO05D008151 3.8e-248 862.1 691 63.0
Mapoly0007s0127 Marchantia polymorpha HOM05D005937 ORTHO05D008151 1.3e-237 827.0 860 49.1
AagrBONN_evm.TU.Sc2ySwM_368.2798 Anthoceros agrestis HOM05D005937 ORTHO05D008151 6.5e-232 808.1 859 48.7
SGA_v2.0_scaffold395G50730 Striga asiatica HOM05D005937 ORTHO05D008151 5.7e-228 795.0 747 58.1
Pp3c22_15610 Physcomitrium patens HOM05D005937 ORTHO05D008151 1.1e-226 790.8 867 48.1
BcaB01g00040 Brassica carinata HOM05D005937 ORTHO05D008151 8.5e-224 781.2 393 98.2
SMO141G0067 Selaginella moellendorffii HOM05D005937 ORTHO05D008151 1.4e-215 753.8 749 51.1
HPP92_007567 Vanilla planifolia HOM05D005937 ORTHO05D008151 3.8e-192 676.0 827 47.9
CBR_g61489 Chara braunii HOM05D005937 ORTHO05D008151 2.3e-189 666.8 576 53.6
Hma1.2p1_0523F.1_g172070 Hydrangea macrophylla HOM05D005937 ORTHO05D008151 6.6e-176 622.1 509 62.5
Actinidia00964 Actinidia chinensis HOM05D005937 ORTHO05D008151 1.9e-170 604.0 482 62.7
Cre12.g554250 Chlamydomonas reinhardtii HOM05D005937 ORTHO05D008151 6.2e-150 535.8 796 39.1
PRCOL_00004696 Prasinoderma coloniale HOM05D005937 ORTHO05D008151 1.7e-147 527.7 810 38.4
CDE04G2743 Ceratophyllum demersum HOM05D005937 ORTHO05D008151 4.5e-140 503.1 552 50.4
BolC8t50756H Brassica oleracea HOM05D005937 ORTHO05D008151 5.7e-119 433.0 206 99.5
HPP92_007578 Vanilla planifolia HOM05D005937 ORTHO05D008151 7.9e-113 412.5 402 53.0
RhsimUnG0153700 Rhododendron simsii HOM05D005937 ORTHO05D008151 5.7e-111 406.4 293 69.6
Rhsim12G0073000 Rhododendron simsii HOM05D005937 ORTHO05D008151 1.5e-103 381.7 292 67.1
SEGI_34891 Sequoiadendron giganteum HOM05D005937 ORTHO05D008151 7.2e-90 336.3 244 66.8
Aqoxy1G01260 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 8.0e-89 332.8 197 77.2
Aqoxy2G01148 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 1.8e-88 331.6 188 80.3
Aqoxy4G01451 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 1.2e-87 328.9 186 80.6
CDE04G2646 Ceratophyllum demersum HOM05D005937 ORTHO05D008151 2.5e-82 311.2 246 58.5
HPP92_007579 Vanilla planifolia HOM05D005937 ORTHO05D008151 6.6e-75 286.6 222 59.5
MCO05G015 Micromonas commoda HOM05D005937 ORTHO05D008151 2.8e-73 281.2 427 38.2
Ah.00g001390 Amaranthus hybridus HOM05D005937 ORTHO05D008151 6.0e-44 183.7 150 56.0
SEGI_09306 Sequoiadendron giganteum HOM05D005937 ORTHO05D008151 7.8e-44 183.3 147 57.8
vmacro09901 Vaccinium macrocarpon HOM05D003975 ORTHO05D009762 7.1e-21 107.1 165 35.8
Aqoxy4G01461 Aquilegia oxysepala HOM05D005937 ORTHO05D026713 1.6e-20 105.9 239 36.4
Hund15853 Selenicereus undatus HOM05D005937 ORTHO05D026713 1.3e-09 69.7 109 38.5
SEGI_37602 Sequoiadendron giganteum HOM05D005937 ORTHO05D026713 1.3e-09 69.7 197 30.5
Rhsim12G0072900 Rhododendron simsii HOM05D005937 ORTHO05D008151 4.0e-08 64.7 66 53.0
Aqoxy4G00767 Aquilegia oxysepala HOM05D005937 ORTHO05D026713 1.5e-07 62.8 94 41.5


User provided reference genes

Program Settings