Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p30490 Brassica napus HOM05D002933 ORTHO05D007742 3.7e-55 218.0 112 100.0
C04p37150 Brassica napus HOM05D002933 ORTHO05D007742 2.0e-37 159.1 107 79.4
BolC4t25275H Brassica oleracea HOM05D002933 ORTHO05D007742 1.8e-33 146.0 107 75.7
BcaB02g08429 Brassica carinata HOM05D002933 ORTHO05D007742 3.0e-33 145.2 104 76.0
A04p04610 Brassica napus HOM05D002933 ORTHO05D007742 3.9e-33 144.8 104 76.0
BraA04t16171Z Brassica rapa HOM05D002933 ORTHO05D007742 2.0e-32 142.5 104 75.0
BcaC02g09745 Brassica carinata HOM05D002933 ORTHO05D007742 3.3e-32 141.7 104 75.0
Sp5g07140 Schrenkiella parvula HOM05D002933 ORTHO05D007742 9.7e-32 140.2 103 75.7
Carub.0005s2198 Capsella rubella HOM05D002933 ORTHO05D007742 4.1e-30 134.8 103 71.8
CARHR165310 Cardamine hirsuta HOM05D002933 ORTHO05D007742 1.5e-29 132.9 105 71.4
Thhalv10010685m.g Eutrema salsugineum HOM05D002933 ORTHO05D007742 5.9e-29 131.0 104 68.3
AT3G55330 Arabidopsis thaliana HOM05D002933 ORTHO05D007742 1.1e-27 126.7 104 67.3
AL5G36450 Arabidopsis lyrata HOM05D002933 ORTHO05D007742 4.2e-27 124.8 104 68.3
Aa31LG10G10340 Aethionema arabicum HOM05D002933 ORTHO05D007742 7.2e-27 124.0 103 68.0
THA.LOC104824268 Tarenaya hassleriana HOM05D002933 ORTHO05D007742 1.7e-20 102.8 105 57.1
Potri.010G210200 Populus trichocarpa HOM05D002933 ORTHO05D007742 9.4e-19 97.1 116 48.3
Atru.chr12.543 Acer truncatum HOM05D002933 ORTHO05D007742 1.5e-16 89.7 106 47.2
Sabra10G0162500 Salix brachista HOM05D002933 ORTHO05D007742 1.5e-16 89.7 116 45.7
Ciclev10032564m.g Citrus clementina HOM05D002933 ORTHO05D007742 2.0e-16 89.4 119 46.2
Manes.07G111100 Manihot esculenta HOM05D002933 ORTHO05D007742 7.5e-16 87.4 108 49.1
Manes.10G038112 Manihot esculenta HOM05D002933 ORTHO05D007742 3.7e-15 85.1 108 47.2
TAR623G1509 Trochodendron aralioides HOM05D002933 ORTHO05D007742 4.8e-15 84.7 79 55.7
TAR623G1657 Trochodendron aralioides HOM05D002933 ORTHO05D007742 4.8e-15 84.7 79 55.7
Nn2g10494 Nelumbo nucifera HOM05D002933 ORTHO05D007742 8.2e-15 84.0 77 53.2
Ca_07202_v3 Cicer arietinum L. HOM05D002933 ORTHO05D007742 3.1e-14 82.0 82 51.2
Dinv22762 Davidia involucrata HOM05D002933 ORTHO05D007742 4.1e-14 81.6 77 54.5
Cc11_g04720 Coffea canephora HOM05D002933 ORTHO05D007742 5.3e-14 81.3 77 50.6
RcHm_v2.0_Chr1g0365751 Rosa chinensis HOM05D002933 ORTHO05D007742 5.3e-14 81.3 111 45.9
Thecc.10G052500 Theobroma cacao HOM05D002933 ORTHO05D007742 5.3e-14 81.3 80 51.2
GSVIVG01016618001 Vitis vinifera HOM05D002933 ORTHO05D007742 5.3e-14 81.3 111 41.4
Hma1.2p1_0060F.1_g032910 Hydrangea macrophylla HOM05D002933 ORTHO05D007742 1.6e-13 79.7 77 50.6
Actinidia18978 Actinidia chinensis HOM05D002933 ORTHO05D007742 2.0e-13 79.3 118 45.8
Actinidia35046 Actinidia chinensis HOM05D002933 ORTHO05D007742 2.0e-13 79.3 121 44.6
Aqoxy4G03028 Aquilegia oxysepala HOM05D002933 ORTHO05D007742 2.0e-13 79.3 73 50.7
COL.COLO4_14919 Corchorus olitorius HOM05D002933 ORTHO05D007742 2.0e-13 79.3 80 47.5
Rhsim12G0149400 Rhododendron simsii HOM05D002933 ORTHO05D007742 2.7e-13 79.0 82 47.6
Cpa.g.sc1.346 Carica papaya HOM05D002933 ORTHO05D007742 3.5e-13 78.6 48 66.7
CiPaw.02G180700 Carya illinoinensis HOM05D002933 ORTHO05D007742 4.5e-13 78.2 109 41.3
vmacro16485 Vaccinium macrocarpon HOM05D002933 ORTHO05D007742 4.5e-13 78.2 82 47.6
MSTRG.22954 Avicennia marina HOM05D002933 ORTHO05D007742 5.9e-13 77.8 76 51.3
QL08p058666 Quercus lobata HOM05D002933 ORTHO05D007742 5.9e-13 77.8 77 49.4
TPR.G15514 Trifolium pratense HOM05D002933 ORTHO05D007742 7.7e-13 77.4 90 47.8
PSO135G0212 Papaver somniferum HOM05D002933 ORTHO05D007742 1.0e-12 77.0 109 40.4
PSO384G2709 Papaver somniferum HOM05D002933 ORTHO05D007742 1.0e-12 77.0 109 40.4
Migut.B00505 Erythranthe guttata HOM05D002933 ORTHO05D007742 1.7e-12 76.3 110 45.5
PGR142G2901 Punica granatum HOM05D002933 ORTHO05D007742 1.7e-12 76.3 73 56.2
SalBow5G4018 Salvia bowleyana HOM05D002933 ORTHO05D007742 1.7e-12 76.3 78 50.0
CSS0020461 Camellia sinensis var. sinensis HOM05D002933 ORTHO05D007742 2.2e-12 75.9 82 47.6
CSS0042513 Camellia sinensis var. sinensis HOM05D002933 ORTHO05D007742 2.2e-12 75.9 82 47.6
CANSAT56G0382 Cannabis sativa HOM05D002933 ORTHO05D007742 2.2e-12 75.9 111 44.1
Haze_17012 Corylus avellana HOM05D002933 ORTHO05D007742 2.2e-12 75.9 77 51.9
TWI38G1573 Tripterygium wilfordii HOM05D002933 ORTHO05D007742 2.2e-12 75.9 113 40.7
Peaxi162Scf01223g00010 Petunia axillaris HOM05D002933 ORTHO05D007742 2.9e-12 75.5 77 49.4
ClCG09G020230 Citrullus lanatus HOM05D002933 ORTHO05D007742 3.8e-12 75.1 112 44.6
Glyma.02G094900 Glycine max HOM05D002933 ORTHO05D007742 3.8e-12 75.1 80 48.8
Glyma.18G286500 Glycine max HOM05D002933 ORTHO05D007742 3.8e-12 75.1 80 48.8
ECA246G3602 Erigeron canadensis HOM05D002933 ORTHO05D007742 5.0e-12 74.7 76 46.1
Phvul.008G015100 Phaseolus vulgaris HOM05D002933 ORTHO05D007742 5.0e-12 74.7 84 46.4
Hund09944 Selenicereus undatus HOM05D002933 ORTHO05D007742 5.0e-12 74.7 79 50.6
Gorai.009G317700 Gossypium raimondii HOM05D002933 ORTHO05D007742 6.5e-12 74.3 62 51.6
Lj1g0025916 Lotus japonicus HOM05D002933 ORTHO05D007742 6.5e-12 74.3 84 45.2
Lalb_Chr10g0091861 Lupinus albus HOM05D002933 ORTHO05D007742 6.5e-12 74.3 83 48.2
VMungo1383G1673 Vigna mungo HOM05D002933 ORTHO05D007742 6.5e-12 74.3 85 47.1
Cfa001530 Carpinus fangiana HOM05D002933 ORTHO05D007742 8.5e-12 73.9 77 50.6
Gohir.A05G300500 Gossypium hirsutum HOM05D002933 ORTHO05D007742 8.5e-12 73.9 79 46.8
Duzib114G0859 Durio zibethinus HOM05D002933 ORTHO05D007742 1.1e-11 73.6 81 46.9
MELO3C025475.2 Cucumis melo HOM05D002933 ORTHO05D007742 1.5e-11 73.2 80 50.0
CsaV3_5G026220 Cucumis sativus L. HOM05D002933 ORTHO05D007742 1.5e-11 73.2 80 50.0
HanXRQChr05g0154341 Helianthus annuus HOM05D002933 ORTHO05D007742 1.5e-11 73.2 77 46.8
Lj9A439T48 Lonicera japonica HOM05D002933 ORTHO05D007742 1.5e-11 73.2 85 45.9
MD01G1121300 Malus domestica HOM05D002933 ORTHO05D007742 1.5e-11 73.2 75 50.7
Medtr7g023290 Medicago truncatula HOM05D002933 ORTHO05D007742 1.5e-11 73.2 110 41.8
PGSC0003DMG400024531 Solanum tuberosum HOM05D002933 ORTHO05D007742 1.5e-11 73.2 77 46.8
Eucgr.G02904 Eucalyptus grandis HOM05D002933 ORTHO05D007742 1.9e-11 72.8 112 44.6
Gohir.D05G300200 Gossypium hirsutum HOM05D002933 ORTHO05D007742 2.5e-11 72.4 51 52.9
FAN06G1816 Fragaria x ananassa HOM05D002933 ORTHO05D007742 3.2e-11 72.0 112 43.8
arahy.Tifrunner.gnm1.ann1.55TXVJ Arachis hypogaea HOM05D002933 ORTHO05D007742 4.2e-11 71.6 84 42.9
arahy.Tifrunner.gnm1.ann1.XEQF22 Arachis hypogaea HOM05D002933 ORTHO05D007742 4.2e-11 71.6 84 42.9
EL10Ac5g11164 Beta vulgaris HOM05D002933 ORTHO05D007742 4.2e-11 71.6 111 44.1
FAN01G1038 Fragaria x ananassa HOM05D002933 ORTHO05D007742 4.2e-11 71.6 103 45.6
Nitab4.5_0001797g0060 Nicotiana tabacum HOM05D002933 ORTHO05D007742 5.5e-11 71.2 77 49.4
AUR62032114 Chenopodium quinoa HOM05D002933 ORTHO05D007742 7.2e-11 70.9 112 45.5
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 9.4e-11 70.5 79 48.1
CDE07G0630 Ceratophyllum demersum HOM05D002933 ORTHO05D007742 9.4e-11 70.5 88 47.7
FvH4_7g21370 Fragaria vesca HOM05D002933 ORTHO05D007742 9.4e-11 70.5 111 43.2
FAN06G3199 Fragaria x ananassa HOM05D002933 ORTHO05D007742 9.4e-11 70.5 112 42.9
Sc12g0007090 Simmondsia chinensis HOM05D002933 ORTHO05D007742 1.6e-10 69.7 112 43.8
CAN.G1228.6 Capsicum annuum HOM05D002933 ORTHO05D007742 2.1e-10 69.3 77 45.5
Sopen03g034010 Solanum pennellii HOM05D002933 ORTHO05D007742 2.1e-10 69.3 77 44.2
CDE04G2678 Ceratophyllum demersum HOM05D002933 ORTHO05D007742 2.7e-10 68.9 112 42.9
AUR62039657 Chenopodium quinoa HOM05D002933 ORTHO05D007742 3.6e-10 68.6 112 44.6
FAN10G2797 Fragaria x ananassa HOM05D002933 ORTHO05D007742 3.6e-10 68.6 112 42.9
TWI15G0569 Tripterygium wilfordii HOM05D002933 ORTHO05D007742 3.6e-10 68.6 110 40.9
Sed0016692 Sechium edule HOM05D002933 ORTHO05D007742 8.0e-10 67.4 74 45.9
Solyc03g114930.3 Solanum lycopersicum HOM05D002933 ORTHO05D007742 1.4e-09 66.6 77 42.9
unitig_52.g17502 Utricularia gibba HOM05D002933 ORTHO05D007742 1.4e-09 66.6 73 50.7
FAN03G0329 Fragaria x ananassa HOM05D002933 ORTHO05D007742 1.8e-09 66.2 112 40.2
SGA_v2.0_scaffold28G11731 Striga asiatica HOM05D002933 ORTHO05D007742 1.8e-09 66.2 53 52.8
HPP92_027632 Vanilla planifolia HOM05D002933 ORTHO05D007742 1.8e-09 66.2 113 39.8
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 3.0e-09 65.5 90 42.2
Psat6g169400 Pisum sativum HOM05D002933 ORTHO05D007742 4.0e-09 65.1 83 43.4
HPP92_016520 Vanilla planifolia HOM05D002933 ORTHO05D007742 6.8e-09 64.3 113 39.8
Nitab4.5_0001723g0030 Nicotiana tabacum HOM05D002933 ORTHO05D007742 8.8e-09 63.9 56 48.2
Prupe.2G229000 Prunus persica HOM05D002933 ORTHO05D007742 8.8e-09 63.9 51 52.9
ATR0033G026 Amborella trichopoda HOM05D002933 ORTHO05D007742 5.7e-08 61.2 99 38.4
Hund02566 Selenicereus undatus HOM05D002933 ORTHO05D007742 5.7e-08 61.2 96 40.6
Potri.008G050300 Populus trichocarpa HOM05D002933 ORTHO05D007742 2.2e-07 59.3 75 41.3
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.4e-06 56.6 63 42.9


User provided reference genes

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