Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 2.8e-144 515.4 283 100.0
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 6.5e-125 451.1 261 96.6
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 9.7e-121 437.2 262 93.1
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 6.7e-114 414.5 254 91.7
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 7.0e-111 404.4 254 92.1
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 1.3e-109 400.2 255 89.4
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 6.3e-104 381.3 259 77.6
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.7e-101 373.2 260 77.7
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 1.9e-100 369.8 261 75.1
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 2.1e-99 366.3 262 74.8
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 6.1e-99 364.8 261 74.7
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 6.1e-99 364.8 259 76.8
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 2.2e-96 356.3 256 74.6
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 2.8e-96 355.9 263 73.0
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 6.3e-96 354.8 264 72.3
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 6.3e-96 354.8 259 72.6
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 6.3e-96 354.8 259 72.6
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 1.8e-95 353.2 260 72.7
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 2.4e-95 352.8 259 73.4
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 4.1e-95 352.1 260 72.3
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 5.4e-95 351.7 260 72.3
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 1.0e-93 347.4 261 71.3
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 1.1e-92 344.0 261 78.2
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 4.2e-92 342.0 279 67.7
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 1.8e-90 336.7 266 67.3
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 2.0e-89 333.2 263 67.3
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 1.3e-88 330.5 264 67.4
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 1.7e-88 330.1 263 66.5
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 2.2e-88 329.7 265 67.2
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 2.8e-88 329.3 263 66.5
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 4.9e-88 328.6 266 65.4
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 6.3e-88 328.2 263 66.2
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 8.3e-88 327.8 264 65.5
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 1.1e-87 327.4 266 67.7
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 2.4e-87 326.2 268 65.7
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 2.4e-87 326.2 264 65.9
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 3.1e-87 325.9 263 66.9
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 4.1e-87 325.5 265 64.9
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 9.2e-87 324.3 266 64.7
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 9.2e-87 324.3 266 64.7
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 9.2e-87 324.3 264 66.7
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 1.2e-86 323.9 265 66.4
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 1.6e-86 323.6 266 64.7
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 1.6e-86 323.6 266 65.4
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 2.0e-86 323.2 263 65.0
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 2.0e-86 323.2 261 67.4
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 2.7e-86 322.8 266 65.8
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.5e-86 322.4 266 64.3
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 4.5e-86 322.0 260 66.5
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 1.0e-85 320.9 266 66.2
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 1.3e-85 320.5 263 64.6
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 2.3e-85 319.7 266 64.7
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 2.3e-85 319.7 266 65.8
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 2.9e-85 319.3 264 66.3
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 3.8e-85 318.9 265 64.9
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 3.8e-85 318.9 262 64.9
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 5.0e-85 318.5 266 63.5
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 6.6e-85 318.2 265 65.3
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 8.6e-85 317.8 264 63.3
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.1e-84 317.4 263 65.0
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 1.1e-84 317.4 260 64.6
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.5e-84 317.0 247 68.8
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.9e-84 316.6 260 64.6
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 2.5e-84 316.2 255 66.3
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 3.3e-84 315.8 260 64.6
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 4.3e-84 315.5 266 64.7
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 5.6e-84 315.1 260 64.6
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 5.6e-84 315.1 260 64.6
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 7.3e-84 314.7 265 63.8
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 7.3e-84 314.7 264 67.0
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 7.3e-84 314.7 264 67.0
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 7.3e-84 314.7 265 63.0
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 7.3e-84 314.7 249 67.1
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 7.3e-84 314.7 261 67.0
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 9.5e-84 314.3 262 64.1
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 1.2e-83 313.9 264 65.5
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.2e-83 313.9 264 65.2
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 1.2e-83 313.9 263 64.6
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 1.2e-83 313.9 261 63.6
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.6e-83 313.5 263 64.3
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.6e-83 313.5 263 63.5
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 2.1e-83 313.2 263 63.5
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 3.6e-83 312.4 232 72.0
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 3.6e-83 312.4 263 63.9
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 4.7e-83 312.0 266 65.4
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 4.7e-83 312.0 272 63.2
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 6.1e-83 311.6 265 63.8
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 8.0e-83 311.2 263 64.6
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 1.0e-82 310.8 265 62.3
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.4e-82 310.5 268 61.2
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 2.3e-82 309.7 285 60.7
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 2.3e-82 309.7 273 63.4
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 3.0e-82 309.3 249 65.9
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 3.0e-82 309.3 266 62.8
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 4.0e-82 308.9 260 63.5
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 6.8e-82 308.1 264 65.9
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 6.8e-82 308.1 260 63.5
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 6.8e-82 308.1 267 62.5
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 1.2e-81 307.4 261 62.5
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 1.5e-81 307.0 261 63.2
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 2.0e-81 306.6 267 62.5
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 2.6e-81 306.2 249 64.7
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 4.4e-81 305.4 260 63.8
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.4e-81 305.4 260 63.8
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 5.8e-81 305.1 260 63.5
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 5.8e-81 305.1 260 63.5
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 5.8e-81 305.1 264 62.5
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 7.5e-81 304.7 255 64.3
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 7.5e-81 304.7 260 63.1
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 9.8e-81 304.3 266 61.3
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 9.8e-81 304.3 261 63.6
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 9.8e-81 304.3 262 62.2
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 1.3e-80 303.9 256 63.3
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 1.3e-80 303.9 265 63.0
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 1.7e-80 303.5 259 63.7
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 4.9e-80 302.0 270 60.7
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 8.3e-80 301.2 249 63.9
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 1.8e-79 300.1 274 61.3
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 3.2e-79 299.3 265 61.9
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 3.2e-79 299.3 305 56.1
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 3.2e-79 299.3 255 62.7
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 7.0e-79 298.1 259 62.2
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 2.0e-78 296.6 267 60.3
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 4.6e-78 295.4 249 61.8
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 3.9e-77 292.4 280 59.3
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 5.0e-77 292.0 258 61.2
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 4.3e-76 288.9 249 61.8
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 5.6e-76 288.5 265 61.5
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 2.8e-75 286.2 255 61.2
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 3.6e-75 285.8 256 61.7
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 8.0e-75 284.6 316 53.5
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 1.1e-74 284.3 262 59.9
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 2.3e-74 283.1 267 58.4
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 5.2e-74 282.0 258 60.1
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 5.2e-74 282.0 258 60.1
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 3.4e-73 279.3 263 59.3
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 6.4e-72 275.0 259 59.5
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 3.2e-71 272.7 224 66.1
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 4.1e-71 272.3 254 59.8
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 5.4e-71 271.9 264 58.0
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 9.2e-71 271.2 237 63.3
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 3.5e-70 269.2 259 59.1
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 7.8e-70 268.1 257 62.6
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 5.6e-68 261.9 200 68.5
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 2.1e-67 260.0 274 56.9
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 6.2e-67 258.5 281 52.7
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 1.8e-66 256.9 197 68.5
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 4.4e-65 252.3 235 57.0
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.3e-64 250.8 144 83.3
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 1.1e-63 247.7 144 82.6
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 2.3e-61 240.0 146 78.1
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 1.0e-37 161.4 143 58.7
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 3.3e-36 156.4 140 55.0
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 2.8e-35 153.3 147 53.1
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 9.3e-31 138.3 167 49.7
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 7.9e-30 135.2 93 71.0
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.1e-28 131.3 74 87.8
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 6.9e-26 122.1 89 67.4
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 9.0e-26 121.7 147 46.3
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 1.2e-22 111.3 237 33.8
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 1.8e-18 97.4 161 39.8
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 1.0e-16 91.7 121 41.3
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 1.0e-13 81.6 83 59.0
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 6.3e-11 72.4 98 46.9
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 8.2e-11 72.0 51 68.6
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 4.5e-09 66.2 44 65.9
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 7.7e-09 65.5 43 67.4
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 1.0e-08 65.1 135 34.8
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 3.8e-08 63.2 105 35.2
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 1.2e-06 58.2 42 61.9
BolC1t01166H Brassica oleracea HOM05D003984 ORTHO05D033849 1.6e-06 57.8 46 69.6
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 2.1e-06 57.4 40 62.5


User provided reference genes

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