Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 8.2e-146 520.4 268 100.0
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 9.8e-131 470.3 279 90.0
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 5.0e-119 431.4 230 95.7
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 2.1e-117 426.0 318 76.4
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 1.5e-115 419.9 276 83.3
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 4.9e-114 414.8 276 83.3
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 1.1e-113 413.7 301 77.4
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 2.4e-113 412.5 256 87.9
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 9.5e-102 374.0 279 75.3
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 8.1e-101 370.9 245 82.9
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 2.1e-96 356.3 245 80.8
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 2.5e-94 349.4 258 77.9
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 2.5e-94 349.4 269 74.3
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 4.0e-92 342.0 284 71.1
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 8.4e-90 334.3 251 74.9
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 5.4e-89 331.6 273 70.7
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 7.8e-88 327.8 283 68.9
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 7.6e-83 311.2 277 64.3
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 1.8e-76 290.0 196 74.5
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 3.1e-76 289.3 188 75.5
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 1.2e-75 287.3 256 66.8
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 2.0e-75 286.6 204 71.1
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 2.0e-75 286.6 204 71.1
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 7.6e-75 284.6 187 75.4
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 9.9e-75 284.3 196 73.0
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 9.9e-75 284.3 196 71.9
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 2.9e-74 282.7 195 70.8
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.8e-74 282.3 197 71.6
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 4.9e-74 282.0 187 72.7
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 8.4e-74 281.2 198 70.7
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 1.4e-73 280.4 193 73.1
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 1.4e-73 280.4 187 73.8
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 1.9e-73 280.0 195 69.7
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 2.5e-73 279.6 196 70.9
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 4.2e-73 278.9 196 69.9
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 5.5e-73 278.5 168 78.0
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 5.5e-73 278.5 196 70.4
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 7.1e-73 278.1 186 72.6
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 1.2e-72 277.3 189 70.9
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 1.6e-72 276.9 196 69.9
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 2.1e-72 276.6 187 73.8
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 2.7e-72 276.2 175 74.9
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 2.7e-72 276.2 188 72.9
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 3.5e-72 275.8 188 71.8
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 4.6e-72 275.4 188 72.9
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 7.9e-72 274.6 188 72.9
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 1.3e-71 273.9 189 70.9
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.8e-71 273.5 276 55.8
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 1.8e-71 273.5 185 70.8
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 1.8e-71 273.5 270 55.9
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 3.0e-71 272.7 172 75.0
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 3.9e-71 272.3 189 69.8
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 3.9e-71 272.3 186 72.6
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 5.1e-71 271.9 190 70.5
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 5.1e-71 271.9 190 70.5
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 5.1e-71 271.9 190 70.5
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 6.7e-71 271.6 195 68.7
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 6.7e-71 271.6 185 71.9
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 8.7e-71 271.2 272 56.2
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 8.7e-71 271.2 186 70.4
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 8.7e-71 271.2 188 70.7
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 1.1e-70 270.8 184 71.7
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 1.1e-70 270.8 174 77.6
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 1.5e-70 270.4 186 70.4
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 1.9e-70 270.0 228 62.7
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 2.5e-70 269.6 200 65.0
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 3.3e-70 269.2 190 67.9
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 3.3e-70 269.2 190 67.9
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 3.3e-70 269.2 189 71.4
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 4.3e-70 268.9 189 70.4
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 5.6e-70 268.5 168 76.2
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 9.6e-70 267.7 180 73.9
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 2.8e-69 266.2 192 69.3
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 4.8e-69 265.4 171 73.1
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 4.8e-69 265.4 268 55.6
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 6.2e-69 265.0 186 68.3
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 8.2e-69 264.6 194 67.5
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 1.1e-68 264.2 185 67.6
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 1.1e-68 264.2 190 68.4
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 1.1e-68 264.2 173 72.3
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 1.4e-68 263.8 189 68.3
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 1.4e-68 263.8 191 71.7
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 4.0e-68 262.3 182 69.2
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 9.0e-68 261.2 192 71.9
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.5e-67 260.4 185 69.2
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.5e-67 260.4 185 69.2
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 2.6e-67 259.6 183 68.3
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 3.4e-67 259.2 181 71.3
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 4.5e-67 258.8 263 54.8
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 5.8e-67 258.5 191 68.1
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 7.6e-67 258.1 181 71.3
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 1.0e-66 257.7 209 64.1
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.0e-66 257.7 195 64.6
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 2.2e-66 256.5 218 62.8
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 3.8e-66 255.8 195 64.1
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 8.4e-66 254.6 199 65.3
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 1.9e-65 253.4 207 64.7
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 1.9e-65 253.4 193 64.8
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 4.2e-65 252.3 186 72.6
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 5.5e-65 251.9 225 59.1
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 1.6e-64 250.4 186 65.1
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 4.6e-64 248.8 194 66.0
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 5.1e-63 245.4 186 64.0
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 5.1e-63 245.4 186 64.0
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.1e-63 245.4 186 64.0
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.1e-63 245.4 186 64.0
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 1.9e-62 243.4 237 55.7
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 3.3e-62 242.7 177 66.7
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 5.7e-62 241.9 192 65.6
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 5.7e-62 241.9 187 62.6
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 2.2e-61 240.0 160 70.6
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 1.8e-60 236.9 161 70.8
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 6.9e-60 235.0 174 66.7
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 2.0e-59 233.4 213 68.5
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 5.9e-59 231.9 210 56.7
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 1.7e-58 230.3 169 64.5
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 7.2e-57 224.9 202 57.9
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 7.4e-54 214.9 177 59.9
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 2.0e-51 206.8 136 69.1
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 7.2e-49 198.4 140 70.7
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 3.9e-47 192.6 170 58.2
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 2.6e-46 189.9 228 52.6
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 3.1e-44 183.0 135 66.7
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 5.3e-44 182.2 109 76.1
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 1.6e-40 170.6 118 68.6
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 4.5e-35 152.5 93 77.4
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 1.4e-31 141.0 102 64.7
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 4.4e-30 136.0 188 44.1
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 2.2e-26 123.6 133 46.6
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 2.5e-25 120.2 135 44.4
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 1.6e-24 117.5 160 37.5
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 2.7e-24 116.7 182 42.9
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 7.5e-22 108.6 96 57.3
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 3.5e-19 99.8 78 62.8
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 4.5e-19 99.4 87 59.8
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 4.5e-19 99.4 87 59.8
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 3.3e-17 93.2 80 61.2
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 5.4e-12 75.9 113 43.4
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 1.9e-09 67.4 41 73.2
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.6e-08 63.2 125 40.8
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 6.1e-08 62.4 52 59.6
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 4.0e-07 59.7 56 62.5


User provided reference genes

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