Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 1.1e-296 1022.7 575 100.0
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 6.7e-294 1013.4 575 99.1
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 1.9e-293 1011.9 575 99.0
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 6.5e-281 970.3 575 95.0
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 1.6e-279 965.7 575 94.4
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 4.8e-244 847.8 574 82.8
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 8.9e-230 800.4 570 80.2
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 1.7e-225 786.2 575 77.6
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 3.6e-215 751.9 575 71.7
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 2.5e-208 729.2 574 70.2
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 1.4e-206 723.4 574 70.6
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 3.7e-204 715.3 565 71.9
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 7.1e-203 711.1 574 67.4
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 9.2e-203 710.7 575 66.8
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 5.6e-200 701.4 574 66.2
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 1.5e-197 693.3 575 70.4
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 1.2e-189 667.2 577 63.3
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 4.3e-184 648.7 565 67.3
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 2.6e-173 612.8 545 59.1
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 4.1e-134 482.6 579 47.3
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 2.7e-133 479.9 545 48.8
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 4.4e-128 462.6 555 45.8
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 4.1e-126 456.1 577 45.6
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 7.0e-126 455.3 579 45.4
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.3e-124 451.1 578 45.8
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.5e-123 446.8 545 46.8
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 9.4e-123 444.9 572 44.1
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 3.0e-121 439.9 547 46.6
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 8.8e-121 438.3 574 45.6
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 2.0e-120 437.2 577 43.3
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.2e-119 433.7 539 46.2
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 1.4e-118 431.0 575 43.1
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 2.3e-116 423.7 583 43.4
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 6.6e-116 422.2 574 44.6
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 6.6e-116 422.2 561 43.3
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 6.6e-116 422.2 561 43.3
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 1.5e-115 421.0 580 43.3
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 3.3e-115 419.9 537 42.8
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 4.3e-115 419.5 578 42.7
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.7e-114 416.0 573 44.0
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 8.0e-114 415.2 579 41.6
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 3.0e-113 413.3 552 43.5
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 8.9e-113 411.8 566 42.8
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 3.4e-112 409.8 596 41.8
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 3.4e-112 409.8 546 43.2
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 1.1e-110 404.8 579 42.7
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 3.2e-110 403.3 584 42.6
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 3.2e-110 403.3 571 42.2
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 9.2e-110 401.7 645 39.7
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 9.2e-110 401.7 580 40.5
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 3.5e-109 399.8 558 40.5
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 5.9e-109 399.1 553 43.2
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 7.8e-109 398.7 588 42.3
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 1.7e-108 397.5 558 42.1
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 2.3e-108 397.1 559 42.4
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.0e-108 396.7 573 43.1
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 5.6e-107 392.5 553 41.0
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.8e-106 390.2 575 40.0
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 6.2e-106 389.0 562 40.4
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.4e-105 387.9 562 40.4
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 1.8e-105 387.5 573 40.7
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 3.1e-105 386.7 545 42.0
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 6.8e-105 385.6 562 40.4
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 8.9e-105 385.2 578 40.7
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 8.9e-105 385.2 536 41.0
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.2e-104 384.8 545 42.0
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 1.3e-103 381.3 554 41.2
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 1.3e-103 381.3 553 40.0
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 2.2e-103 380.6 571 39.6
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 8.3e-103 378.6 576 39.4
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 2.4e-102 377.1 575 39.8
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 7.0e-102 375.6 576 40.6
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 7.0e-102 375.6 554 40.8
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 9.2e-102 375.2 573 38.9
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 2.7e-101 373.6 583 39.8
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 3.5e-101 373.2 582 38.8
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 3.5e-101 373.2 556 43.7
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 1.7e-100 370.9 521 39.7
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 2.3e-100 370.5 572 37.9
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 3.9e-100 369.8 567 38.8
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 6.6e-100 369.0 563 38.7
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.1e-99 368.2 579 38.7
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.2e-98 364.8 576 37.8
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 2.1e-98 364.0 572 37.1
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 8.1e-98 362.1 582 38.5
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 4.0e-97 359.8 561 39.2
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 5.2e-97 359.4 563 38.2
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 2.0e-96 357.5 582 39.0
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 3.4e-96 356.7 581 37.5
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 3.4e-96 356.7 580 38.3
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 1.7e-95 354.4 582 38.8
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 2.2e-95 354.0 461 44.7
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 1.4e-94 351.3 538 41.8
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 2.4e-94 350.5 462 43.5
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 3.2e-94 350.1 576 41.0
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 2.1e-93 347.4 548 38.9
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 6.0e-93 345.9 471 43.5
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 1.1e-91 341.7 580 36.4
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 8.1e-90 335.5 567 36.3
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 8.9e-89 332.0 593 36.6
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 8.9e-89 332.0 563 36.8
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 1.2e-88 331.6 555 37.3
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 4.1e-86 323.2 534 37.8
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 1.6e-85 321.2 569 35.3
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 1.6e-85 321.2 576 35.2
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 1.7e-84 317.8 575 36.0
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 3.0e-84 317.0 605 36.9
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 6.6e-84 315.8 541 37.5
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 1.1e-83 315.1 575 35.7
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 1.5e-83 314.7 377 47.7
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 7.3e-83 312.4 596 36.1
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 7.3e-83 312.4 575 35.7
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 1.6e-82 311.2 502 37.1
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 6.2e-82 309.3 473 39.3
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 3.1e-81 307.0 578 34.3
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 6.8e-81 305.8 389 45.5
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 9.9e-80 302.0 464 41.2
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 2.9e-79 300.4 481 38.5
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 7.8e-77 292.4 425 41.2
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 4.3e-75 286.6 583 33.4
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 4.8e-74 283.1 465 39.4
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 5.3e-73 279.6 580 31.9
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.4e-70 271.6 364 43.4
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 2.2e-63 247.7 160 80.0
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 9.6e-59 232.3 457 34.6
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.1e-57 228.8 559 29.5
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 4.5e-56 223.4 389 33.7
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 2.9e-55 220.7 266 44.4
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 5.7e-51 206.5 257 43.2
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 1.3e-47 195.3 553 29.7
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.1e-43 182.2 358 32.7
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 1.8e-41 174.9 403 32.5
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.4e-41 174.5 328 35.1
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.7e-39 168.3 236 43.2
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 2.9e-39 167.5 255 43.5
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 8.5e-39 166.0 464 28.9
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 7.9e-37 159.5 248 35.9
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 1.1e-33 149.1 485 25.8
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 1.6e-29 135.2 458 26.2
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 2.3e-28 131.3 249 30.5
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.1e-22 112.5 164 41.5
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 1.9e-22 111.7 452 23.0
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.5e-22 111.3 179 39.7
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.2e-22 110.5 146 42.5
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 5.5e-22 110.2 131 44.3
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 5.5e-22 110.2 561 22.1
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 7.2e-22 109.8 452 22.8
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 8.0e-21 106.3 308 31.5
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.2e-19 102.4 153 38.6
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.5e-19 102.1 153 37.9
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 3.3e-19 100.9 154 33.8
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 9.7e-19 99.4 86 60.5
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 7.7e-16 89.7 123 44.7
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 1.3e-15 89.0 74 56.8
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 3.8e-15 87.4 175 33.7
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 5.0e-15 87.0 215 28.4
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 6.5e-15 86.7 162 45.1
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 8.0e-13 79.7 105 41.0
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.8e-12 78.6 163 33.1
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 4.0e-12 77.4 140 31.4
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 4.0e-12 77.4 175 30.9
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 2.0e-11 75.1 124 33.9
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 4.4e-11 73.9 122 42.6
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 4.8e-10 70.5 130 31.5
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 6.3e-10 70.1 117 34.2
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 1.6e-08 65.5 67 44.8
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.5e-08 64.3 100 35.0
Nn7g38100 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.3e-07 62.4 131 38.9
MCO01G050 Micromonas commoda HOM05D003578 ORTHO05D004021 5.0e-07 60.5 247 23.1
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.9e-06 58.5 49 55.1
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 3.2e-06 57.8 84 33.3
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 7.2e-06 56.6 48 54.2
arahy.Tifrunner.gnm1.ann1.ZN95YA Arachis hypogaea HOM05D003578 ORTHO05D004021 9.5e-06 56.2 73 39.7


User provided reference genes

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