Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p29540 Brassica napus HOM05D002861 ORTHO05D003104 9.0e-156 553.5 274 100.0
A09p47310 Brassica napus HOM05D002861 ORTHO05D003104 8.7e-135 483.8 364 71.4
BraA09t40192Z Brassica rapa HOM05D002861 ORTHO05D003104 8.7e-135 483.8 364 71.4
BcaB01g00206 Brassica carinata HOM05D002861 ORTHO05D003104 1.5e-110 403.3 401 57.9
BolC8t50560H Brassica oleracea HOM05D002861 ORTHO05D003104 2.8e-109 399.1 370 60.8
Thhalv10010949m.g Eutrema salsugineum HOM05D002861 ORTHO05D003104 4.7e-104 381.7 370 57.8
AL5G35360 Arabidopsis lyrata HOM05D002861 ORTHO05D003104 2.8e-93 345.9 382 53.7
AT3G54310 Arabidopsis thaliana HOM05D002861 ORTHO05D003104 1.9e-89 333.2 369 52.8
Carub.0005s2091 Capsella rubella HOM05D002861 ORTHO05D003104 3.6e-88 328.9 369 51.8
Carub.0005s2090 Capsella rubella HOM05D002861 ORTHO05D003104 2.7e-75 286.2 393 46.3
Sp5g08080 Schrenkiella parvula HOM05D002861 ORTHO05D003104 8.6e-74 281.2 376 47.1
Potri.019G030300 Populus trichocarpa HOM05D002861 ORTHO05D003104 6.4e-45 185.3 287 39.7
GSVIVG01026376001 Vitis vinifera HOM05D002861 ORTHO05D003104 1.9e-44 183.7 310 37.7
Eucgr.B02175 Eucalyptus grandis HOM05D002861 ORTHO05D003104 4.6e-43 179.1 287 40.1
Hma1.2p1_0123F.1_g057920 Hydrangea macrophylla HOM05D002861 ORTHO05D003104 6.0e-43 178.7 278 36.7
TAR633G0661 Trochodendron aralioides HOM05D002861 ORTHO05D003104 1.3e-42 177.6 306 35.9
THA.LOC104826016 Tarenaya hassleriana HOM05D002861 ORTHO05D003104 1.5e-41 174.1 303 39.6
TAR633G1221 Trochodendron aralioides HOM05D002861 ORTHO05D003104 3.3e-41 172.9 309 34.0
Thecc.05G260700 Theobroma cacao HOM05D002861 ORTHO05D003104 5.6e-41 172.2 284 37.3
TWI60G1199 Tripterygium wilfordii HOM05D002861 ORTHO05D003104 1.6e-40 170.6 288 37.5
Potri.019G029800 Populus trichocarpa HOM05D002861 ORTHO05D003104 2.1e-40 170.2 289 37.7
Sabra19G0037000 Salix brachista HOM05D002861 ORTHO05D003104 4.8e-40 169.1 300 37.0
Duzib177G0372 Durio zibethinus HOM05D002861 ORTHO05D003104 6.2e-40 168.7 293 37.2
Hma1.2p1_0123F.1_g057930 Hydrangea macrophylla HOM05D002861 ORTHO05D003104 1.4e-39 167.5 313 33.5
Sabra19G0036500 Salix brachista HOM05D002861 ORTHO05D003104 1.4e-39 167.5 287 37.3
Sabra19G0036700 Salix brachista HOM05D002861 ORTHO05D003104 1.8e-39 167.2 287 36.9
Migut.F01820 Erythranthe guttata HOM05D002861 ORTHO05D003104 5.3e-39 165.6 289 37.4
Potri.019G029900 Populus trichocarpa HOM05D002861 ORTHO05D003104 1.2e-38 164.5 287 35.9
QL03p068890 Quercus lobata HOM05D002861 ORTHO05D003104 1.2e-38 164.5 285 36.8
COL.COLO4_20548 Corchorus olitorius HOM05D002861 ORTHO05D003104 2.6e-38 163.3 283 36.4
Actinidia38916 Actinidia chinensis HOM05D002861 ORTHO05D003104 4.5e-38 162.5 305 35.7
Sabra19G0036400 Salix brachista HOM05D002861 ORTHO05D003104 9.9e-38 161.4 299 35.8
THA.LOC104826015 Tarenaya hassleriana HOM05D002861 ORTHO05D003104 1.7e-37 160.6 279 38.0
Potri.019G030200 Populus trichocarpa HOM05D002861 ORTHO05D003104 2.9e-37 159.8 288 36.1
Gohir.D11G250600 Gossypium hirsutum HOM05D002861 ORTHO05D003104 3.8e-37 159.5 284 36.3
Gorai.007G268700 Gossypium raimondii HOM05D002861 ORTHO05D003104 3.8e-37 159.5 284 36.3
TWI34G1014 Tripterygium wilfordii HOM05D002861 ORTHO05D003104 4.9e-37 159.1 300 34.7
Manes.09G144800 Manihot esculenta HOM05D002861 ORTHO05D003104 8.4e-37 158.3 298 34.9
Gohir.A11G241200 Gossypium hirsutum HOM05D002861 ORTHO05D003104 1.1e-36 157.9 293 35.2
Oeu007688.1 Olea europaea HOM05D002861 ORTHO05D003104 1.1e-36 157.9 298 33.6
QL04p087697 Quercus lobata HOM05D002861 ORTHO05D003104 1.4e-36 157.5 294 36.4
TWI34G0682 Tripterygium wilfordii HOM05D002861 ORTHO05D003104 3.2e-36 156.4 286 33.9
Cpa.g.sc51.68 Carica papaya HOM05D002861 ORTHO05D003104 7.1e-36 155.2 287 36.2
Sabra19G0036800 Salix brachista HOM05D002861 ORTHO05D003104 7.1e-36 155.2 281 35.6
Eucgr.B02176 Eucalyptus grandis HOM05D002861 ORTHO05D003104 9.3e-36 154.8 256 36.3
Eucgr.B02174 Eucalyptus grandis HOM05D002861 ORTHO05D003104 1.6e-35 154.1 285 33.7
Sabra19G0039600 Salix brachista HOM05D002861 ORTHO05D003104 7.9e-35 151.8 322 32.9
AT2G38430 Arabidopsis thaliana HOM05D002861 ORTHO05D003104 1.3e-34 151.0 287 35.5
BcaC01g05540 Brassica carinata HOM05D002861 ORTHO05D003104 1.8e-34 150.6 263 37.3
QL04p087457 Quercus lobata HOM05D002861 ORTHO05D003104 2.3e-34 150.2 295 34.9
Sabra19G0036600 Salix brachista HOM05D002861 ORTHO05D003104 2.3e-34 150.2 327 33.6
Sabra19G0039500 Salix brachista HOM05D002861 ORTHO05D003104 2.3e-34 150.2 299 34.1
Sabra19G0037100 Salix brachista HOM05D002861 ORTHO05D003104 3.0e-34 149.8 320 33.1
AL4G35700 Arabidopsis lyrata HOM05D002861 ORTHO05D003104 3.9e-34 149.4 287 35.9
Ciclev10020477m.g Citrus clementina HOM05D002861 ORTHO05D003104 6.7e-34 148.7 300 34.0
THA.LOC104826017 Tarenaya hassleriana HOM05D002861 ORTHO05D003104 8.7e-34 148.3 302 37.1
Eucgr.B02177 Eucalyptus grandis HOM05D002861 ORTHO05D003104 1.1e-33 147.9 252 37.3
Prupe.6G355800 Prunus persica HOM05D002861 ORTHO05D003104 1.1e-33 147.9 300 33.3
PGSC0003DMG401010686 Solanum tuberosum HOM05D002861 ORTHO05D003104 1.1e-33 147.9 290 31.7
BcaB01g03686 Brassica carinata HOM05D002861 ORTHO05D003104 1.5e-33 147.5 285 36.1
QL04p087826 Quercus lobata HOM05D002861 ORTHO05D003104 2.5e-33 146.7 309 34.0
TWI34G1363 Tripterygium wilfordii HOM05D002861 ORTHO05D003104 2.5e-33 146.7 289 33.6
Nn1g07961 Nelumbo nucifera HOM05D002861 ORTHO05D003104 3.3e-33 146.4 288 33.3
Cc09_g03190 Coffea canephora HOM05D002861 ORTHO05D003104 4.3e-33 146.0 326 32.5
BcaB01g03684 Brassica carinata HOM05D002861 ORTHO05D003104 1.3e-32 144.4 286 36.0
BraA04t18408Z Brassica rapa HOM05D002861 ORTHO05D003104 1.3e-32 144.4 280 35.7
A04p29400 Brassica napus HOM05D002861 ORTHO05D003104 1.6e-32 144.1 282 35.1
Eucgr.B02178 Eucalyptus grandis HOM05D002861 ORTHO05D003104 2.8e-32 143.3 300 34.0
C03p25170 Brassica napus HOM05D002861 ORTHO05D003104 4.8e-32 142.5 298 34.2
PGSC0003DMG400005316 Solanum tuberosum HOM05D002861 ORTHO05D003104 4.8e-32 142.5 281 33.8
PGR142G3755 Punica granatum HOM05D002861 ORTHO05D003104 6.2e-32 142.1 290 31.7
Sed0017655 Sechium edule HOM05D002861 ORTHO05D003104 6.2e-32 142.1 291 33.7
CARHR133110 Cardamine hirsuta HOM05D002861 ORTHO05D003104 8.2e-32 141.7 294 35.0
Sed0011787 Sechium edule HOM05D002861 ORTHO05D003104 1.4e-31 141.0 291 33.3
CsaV3_2G010200 Cucumis sativus L. HOM05D002861 ORTHO05D003104 2.4e-31 140.2 290 34.1
THA.LOC104827370 Tarenaya hassleriana HOM05D002861 ORTHO05D003104 2.4e-31 140.2 235 40.9
MD12G1254900 Malus domestica HOM05D002861 ORTHO05D003104 4.0e-31 139.4 289 31.5
Sp4g20750 Schrenkiella parvula HOM05D002861 ORTHO05D003104 5.3e-31 139.0 286 35.0
PGSC0003DMG402010686 Solanum tuberosum HOM05D002861 ORTHO05D003104 5.3e-31 139.0 281 31.3
Atru.chr2.1237 Acer truncatum HOM05D002861 ORTHO05D003104 6.9e-31 138.7 290 30.3
C03p25190 Brassica napus HOM05D002861 ORTHO05D003104 6.9e-31 138.7 282 35.8
Peaxi162Scf01399g00018 Petunia axillaris HOM05D002861 ORTHO05D003104 6.9e-31 138.7 289 32.9
Aa31LG5G8370 Aethionema arabicum HOM05D002861 ORTHO05D003104 1.5e-30 137.5 294 32.7
BcaC02g07466 Brassica carinata HOM05D002861 ORTHO05D003104 1.5e-30 137.5 280 34.6
C04p66700 Brassica napus HOM05D002861 ORTHO05D003104 1.5e-30 137.5 280 34.6
Solyc04g050920.3 Solanum lycopersicum HOM05D002861 ORTHO05D003104 1.5e-30 137.5 276 32.6
Sopen04g022040 Solanum pennellii HOM05D002861 ORTHO05D003104 4.5e-30 136.0 276 32.2
BcaB06g29052 Brassica carinata HOM05D002861 ORTHO05D003104 7.6e-30 135.2 282 34.4
BolC4t28172H Brassica oleracea HOM05D002861 ORTHO05D003104 7.6e-30 135.2 280 34.3
BraA05t19730Z Brassica rapa HOM05D002861 ORTHO05D003104 7.6e-30 135.2 273 33.0
RcHm_v2.0_Chr3g0448691 Rosa chinensis HOM05D002861 ORTHO05D003104 1.7e-29 134.0 287 29.6
Sabra19G0036900 Salix brachista HOM05D002861 ORTHO05D003104 1.7e-29 134.0 313 32.3
Aa31LG5G23930 Aethionema arabicum HOM05D002861 ORTHO05D003104 2.9e-29 133.3 275 33.5
Carub.0004s2040 Capsella rubella HOM05D002861 ORTHO05D003104 2.9e-29 133.3 287 33.8
ClCG11G010120 Citrullus lanatus HOM05D002861 ORTHO05D003104 2.9e-29 133.3 301 31.2
PGR031G2463 Punica granatum HOM05D002861 ORTHO05D003104 3.8e-29 132.9 326 30.4
FvH4_6g01160 Fragaria vesca HOM05D002861 ORTHO05D003104 4.9e-29 132.5 286 32.2
BolC3t14914H Brassica oleracea HOM05D002861 ORTHO05D003104 6.5e-29 132.1 292 33.2
MELO3C008673.2 Cucumis melo HOM05D002861 ORTHO05D003104 1.1e-28 131.3 290 32.1
PSO339G4235 Papaver somniferum HOM05D002861 ORTHO05D003104 1.9e-28 130.6 312 32.1
PSO384G2176 Papaver somniferum HOM05D002861 ORTHO05D003104 1.9e-28 130.6 268 33.2
RcHm_v2.0_Chr3g0448711 Rosa chinensis HOM05D002861 ORTHO05D003104 3.2e-28 129.8 288 29.9
A03p21280 Brassica napus HOM05D002861 ORTHO05D003104 4.2e-28 129.4 307 33.2
BraA03t11365Z Brassica rapa HOM05D002861 ORTHO05D003104 4.2e-28 129.4 307 33.2
A03p21300 Brassica napus HOM05D002861 ORTHO05D003104 5.5e-28 129.0 292 34.6
FAN05G1070 Fragaria x ananassa HOM05D002861 ORTHO05D003104 9.3e-28 128.3 272 32.4
Aa31LG5G23910 Aethionema arabicum HOM05D002861 ORTHO05D003104 1.2e-27 127.9 278 32.4
BcaB02g09188 Brassica carinata HOM05D002861 ORTHO05D003104 3.5e-27 126.3 284 33.5
PGR031G2797 Punica granatum HOM05D002861 ORTHO05D003104 7.9e-27 125.2 291 30.9
Hund07150 Selenicereus undatus HOM05D002861 ORTHO05D003104 1.0e-26 124.8 286 32.2
TWI60G0586 Tripterygium wilfordii HOM05D002861 ORTHO05D003104 1.0e-26 124.8 290 31.7
Ciclev10020658m.g Citrus clementina HOM05D002861 ORTHO05D003104 2.3e-26 123.6 269 31.6
ATR0069G026 Amborella trichopoda HOM05D002861 ORTHO05D003104 3.9e-26 122.9 295 30.2
Thhalv10017863m.g Eutrema salsugineum HOM05D002861 ORTHO05D003104 3.9e-26 122.9 280 33.2
FAN05G3792 Fragaria x ananassa HOM05D002861 ORTHO05D003104 5.1e-26 122.5 273 31.1
Haze_04504 Corylus avellana HOM05D002861 ORTHO05D003104 6.7e-26 122.1 237 35.0
MD12G1254400 Malus domestica HOM05D002861 ORTHO05D003104 8.7e-26 121.7 289 27.3
MD04G1235900 Malus domestica HOM05D002861 ORTHO05D003104 1.1e-25 121.3 277 30.3
Atru.chr2.955 Acer truncatum HOM05D002861 ORTHO05D003104 1.9e-25 120.6 301 30.9
Ciclev10023583m.g Citrus clementina HOM05D002861 ORTHO05D003104 4.3e-25 119.4 288 29.2
Nn1g07959 Nelumbo nucifera HOM05D002861 ORTHO05D003104 4.3e-25 119.4 302 29.8
C04p09150 Brassica napus HOM05D002861 ORTHO05D003104 2.8e-24 116.7 306 30.7
Aa31LG5G23950 Aethionema arabicum HOM05D002861 ORTHO05D003104 4.8e-24 115.9 270 33.3
Aa31LG5G23970 Aethionema arabicum HOM05D002861 ORTHO05D003104 4.8e-24 115.9 270 33.3
A05p07620 Brassica napus HOM05D002861 ORTHO05D003104 4.8e-24 115.9 307 30.6
PSO339G3436 Papaver somniferum HOM05D002861 ORTHO05D003104 4.8e-24 115.9 217 37.3
FAN02G4407 Fragaria x ananassa HOM05D002861 ORTHO05D003104 8.2e-24 115.2 276 29.0
Sp4g20755 Schrenkiella parvula HOM05D002861 ORTHO05D003104 8.2e-24 115.2 182 38.5
FAN14G1630 Fragaria x ananassa HOM05D002861 ORTHO05D003104 1.4e-23 114.4 276 30.8
MD12G1254800 Malus domestica HOM05D002861 ORTHO05D003104 1.8e-23 114.0 283 30.4
BolC4t22524H Brassica oleracea HOM05D002861 ORTHO05D003104 3.1e-23 113.2 306 30.4
Haze_04500 Corylus avellana HOM05D002861 ORTHO05D003104 4.1e-23 112.8 236 33.9
MD12G1254500 Malus domestica HOM05D002861 ORTHO05D003104 6.9e-23 112.1 289 29.4
MD12G1254700 Malus domestica HOM05D002861 ORTHO05D003104 6.9e-23 112.1 287 29.6
AUR62005296 Chenopodium quinoa HOM05D002861 ORTHO05D003104 9.0e-23 111.7 231 30.3
FAN09G2703 Fragaria x ananassa HOM05D002861 ORTHO05D003104 7.6e-22 108.6 246 28.5
PSO339G3782 Papaver somniferum HOM05D002861 ORTHO05D003104 7.6e-22 108.6 273 30.4
ClCG11G010150 Citrullus lanatus HOM05D002861 ORTHO05D003104 2.2e-21 107.1 284 29.2
Atru.chr2.1241 Acer truncatum HOM05D002861 ORTHO05D003104 3.8e-21 106.3 146 37.0
MD12G1254000 Malus domestica HOM05D002861 ORTHO05D003104 5.0e-21 105.9 288 26.0
Ciclev10024529m.g Citrus clementina HOM05D002861 ORTHO05D003104 6.5e-21 105.5 286 29.7
C03p25180 Brassica napus HOM05D002861 ORTHO05D003104 1.9e-20 104.0 237 33.8
MD12G1254300 Malus domestica HOM05D002861 ORTHO05D003104 4.2e-20 102.8 284 26.8
PSO063G4438 Papaver somniferum HOM05D002861 ORTHO05D003104 5.5e-20 102.4 193 31.1
Nitab4.5_0003575g0040 Nicotiana tabacum HOM05D002861 ORTHO05D003104 9.3e-20 101.7 276 29.3
MBI08_g01720_MAGBIO Magnolia biondii HOM05D002861 ORTHO05D003104 2.1e-19 100.5 271 30.3
Ciclev10020321m.g Citrus clementina HOM05D002861 ORTHO05D003104 1.0e-18 98.2 292 29.1
Ciclev10020557m.g Citrus clementina HOM05D002861 ORTHO05D003104 3.0e-18 96.7 286 28.0
Aa31sc46G60 Aethionema arabicum HOM05D002861 ORTHO05D003104 1.1e-17 94.7 277 28.2
Ciclev10020909m.g Citrus clementina HOM05D002861 ORTHO05D003104 2.5e-17 93.6 262 28.6
PGSC0003DMG400045282 Solanum tuberosum HOM05D002861 ORTHO05D003104 4.3e-17 92.8 278 28.8
CANSAT54G2971 Cannabis sativa HOM05D002861 ORTHO05D003104 5.7e-17 92.4 273 30.0
EL10Ac4g09800 Beta vulgaris HOM05D002861 ORTHO05D003104 1.7e-16 90.9 188 28.7
Aa31LG5G24020 Aethionema arabicum HOM05D002861 ORTHO05D003104 4.8e-16 89.4 260 29.6
Aa31LG5G24050 Aethionema arabicum HOM05D002861 ORTHO05D003104 4.8e-16 89.4 260 29.6
arahy.Tifrunner.gnm1.ann1.7LN8RE Arachis hypogaea HOM05D002861 ORTHO05D003104 6.3e-16 89.0 296 26.4
arahy.Tifrunner.gnm1.ann1.J7NADL Arachis hypogaea HOM05D002861 ORTHO05D003104 1.4e-15 87.8 296 25.0
Zm00001eb184490 Zea mays HOM05D002861 ORTHO05D003104 1.4e-15 87.8 274 30.7
MBI11_g07443_MAGBIO Magnolia biondii HOM05D002861 ORTHO05D003104 1.8e-15 87.4 176 32.4
Os02g0504100 Oryza sativa ssp. japonica HOM05D002861 ORTHO05D003104 5.3e-15 85.9 252 29.0
Ciclev10023351m.g Citrus clementina HOM05D002861 ORTHO05D003104 1.2e-14 84.7 270 25.6
Zm00001eb181040 Zea mays HOM05D002861 ORTHO05D003104 1.5e-14 84.3 274 30.3
PSO339G0597 Papaver somniferum HOM05D002861 ORTHO05D003104 2.6e-14 83.6 270 28.5
PGR031G1681 Punica granatum HOM05D002861 ORTHO05D003104 4.5e-14 82.8 127 36.2
CANSAT54G0345 Cannabis sativa HOM05D002861 ORTHO05D003104 5.9e-14 82.4 243 30.0
FvH4_6g01151 Fragaria vesca HOM05D002861 ORTHO05D003104 7.7e-14 82.0 123 36.6
MD12G1253900 Malus domestica HOM05D002861 ORTHO05D003104 7.7e-14 82.0 140 35.0
BcaB08g34773 Brassica carinata HOM05D002861 ORTHO05D003104 1.3e-13 81.3 174 32.2
BolC3t14910H Brassica oleracea HOM05D002861 ORTHO05D003104 2.9e-13 80.1 155 37.4
PSO384G4862 Papaver somniferum HOM05D002861 ORTHO05D003104 3.8e-13 79.7 274 25.9
AUR62000657 Chenopodium quinoa HOM05D002861 ORTHO05D003104 1.9e-12 77.4 232 28.0
Nitab4.5_0000344g0020 Nicotiana tabacum HOM05D002861 ORTHO05D003104 5.5e-12 75.9 108 39.8
PSO384G4571 Papaver somniferum HOM05D002861 ORTHO05D003104 1.2e-11 74.7 276 29.0
AL4G35670 Arabidopsis lyrata HOM05D002861 ORTHO05D003104 2.1e-11 73.9 280 28.2
ATR0069G064 Amborella trichopoda HOM05D002861 ORTHO05D003104 7.9e-11 72.0 166 31.3
CARHR133100 Cardamine hirsuta HOM05D002861 ORTHO05D003104 7.9e-11 72.0 193 31.1
PSO339G1435 Papaver somniferum HOM05D002861 ORTHO05D003104 1.0e-10 71.6 182 29.7
Peaxi162Scf01399g00019 Petunia axillaris HOM05D002861 ORTHO05D003104 6.7e-10 68.9 140 31.4
Eucgr.L02940 Eucalyptus grandis HOM05D002861 ORTHO05D003104 1.5e-09 67.8 161 33.5
Nn1g07960 Nelumbo nucifera HOM05D002861 ORTHO05D003104 6.3e-08 62.4 103 35.0
CSS0016727 Camellia sinensis var. sinensis HOM05D002861 ORTHO05D003104 8.2e-08 62.0 74 44.6
CSS0020648 Camellia sinensis var. sinensis HOM05D002861 ORTHO05D003104 8.2e-08 62.0 74 44.6
FvH4_6g01152 Fragaria vesca HOM05D002861 ORTHO05D003104 5.3e-07 59.3 157 28.7
SEGI_08285 Sequoiadendron giganteum HOM05D002861 ORTHO05D003104 1.5e-06 57.8 183 24.6


User provided reference genes

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