Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 3.8e-207 724.5 356 100.0
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 6.5e-199 697.2 362 94.8
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 7.2e-198 693.7 366 93.4
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 8.6e-191 670.2 364 90.9
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 1.9e-190 669.1 365 91.5
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 1.2e-184 649.8 364 87.9
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 3.9e-183 644.8 367 86.9
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 3.9e-183 644.8 366 88.3
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 8.6e-183 643.7 364 87.4
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 8.6e-183 643.7 366 87.2
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 7.3e-182 640.6 366 86.6
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 7.3e-182 640.6 366 86.6
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 9.5e-182 640.2 368 86.7
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 3.6e-181 638.3 366 86.9
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 8.0e-181 637.1 368 86.7
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 4.9e-178 627.9 367 86.1
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 6.2e-173 610.9 363 82.9
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 1.1e-169 600.1 364 81.0
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 1.3e-167 593.2 364 80.2
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 8.6e-167 590.5 336 89.3
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 1.8e-164 582.8 328 90.5
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 5.2e-164 581.3 365 79.7
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 6.8e-164 580.9 365 79.7
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 8.9e-164 580.5 356 85.1
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 8.9e-164 580.5 367 78.7
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 3.4e-163 578.6 367 78.5
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 6.6e-159 564.3 364 76.9
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 3.6e-157 558.5 364 75.3
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 2.2e-154 549.3 365 74.2
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 2.9e-154 548.9 366 74.0
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 7.1e-153 544.3 365 74.0
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 9.3e-153 543.9 367 74.7
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 6.0e-152 541.2 364 74.7
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 1.3e-149 533.5 373 71.6
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 8.1e-149 530.8 357 72.8
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 1.1e-148 530.4 369 72.1
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 4.0e-148 528.5 365 71.8
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 6.9e-148 527.7 303 82.2
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 1.5e-147 526.6 355 72.1
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 1.5e-147 526.6 365 71.2
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 3.4e-147 525.4 373 70.5
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 4.4e-147 525.0 357 71.7
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 1.3e-146 523.5 375 70.9
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 2.9e-146 522.3 312 78.2
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 4.9e-146 521.5 365 71.5
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 6.4e-146 521.2 318 78.6
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 8.4e-146 520.8 357 72.3
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 1.9e-145 519.6 362 72.1
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 2.4e-145 519.2 321 77.9
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 3.2e-145 518.8 369 71.3
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 4.2e-145 518.5 364 70.9
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 7.1e-145 517.7 334 75.7
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 7.1e-145 517.7 372 69.6
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 9.3e-145 517.3 364 71.7
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 1.2e-144 516.9 370 70.3
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 1.6e-144 516.5 365 69.9
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 2.1e-144 516.2 361 71.2
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 2.7e-144 515.8 364 69.0
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 2.7e-144 515.8 305 80.0
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 2.7e-144 515.8 366 69.9
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 6.0e-144 514.6 365 69.9
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 6.0e-144 514.6 369 69.9
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 1.0e-143 513.8 320 77.2
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 1.7e-143 513.1 353 70.5
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 6.6e-143 511.1 387 66.9
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 6.6e-143 511.1 358 71.2
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 8.7e-143 510.8 368 70.1
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 4.3e-142 508.4 359 68.8
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 4.3e-142 508.4 372 67.2
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 1.3e-141 506.9 364 68.7
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 1.6e-141 506.5 315 78.7
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.6e-141 506.5 369 68.8
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 1.6e-141 506.5 373 69.2
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 2.1e-141 506.1 365 70.1
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 2.1e-141 506.1 368 69.3
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 2.8e-141 505.8 323 75.9
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 8.1e-141 504.2 366 69.1
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 1.8e-140 503.1 320 74.7
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 2.4e-140 502.7 316 75.6
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 4.0e-140 501.9 370 67.8
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 5.3e-140 501.5 302 78.5
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 4.5e-139 498.4 364 68.1
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 7.6e-139 497.7 369 66.7
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 9.9e-139 497.3 311 75.2
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 3.8e-138 495.4 388 65.5
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 4.9e-138 495.0 297 77.4
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 4.9e-138 495.0 359 68.2
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 8.4e-138 494.2 347 70.0
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 8.4e-138 494.2 384 63.5
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 8.4e-138 494.2 362 68.8
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 1.4e-137 493.4 369 66.9
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 1.9e-137 493.0 369 66.1
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.4e-137 492.7 364 68.1
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 7.1e-137 491.1 363 66.9
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 1.2e-136 490.3 369 66.1
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 2.1e-136 489.6 328 80.8
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 2.1e-136 489.6 359 67.7
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 4.6e-136 488.4 366 65.8
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 2.3e-135 486.1 364 67.0
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 8.7e-135 484.2 319 72.7
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 8.7e-135 484.2 364 65.4
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 1.1e-134 483.8 369 65.6
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 2.5e-134 482.6 369 64.8
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 7.4e-134 481.1 364 65.4
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 6.9e-132 474.6 347 69.2
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 1.2e-131 473.8 361 67.9
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 5.8e-131 471.5 362 64.9
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 1.1e-129 467.2 317 71.9
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 1.8e-127 459.9 389 63.5
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.8e-127 459.9 484 52.1
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.5e-126 456.8 388 61.1
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 1.6e-125 453.4 330 70.0
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 2.0e-123 446.4 277 78.0
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 3.8e-122 442.2 286 72.0
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 6.5e-122 441.4 333 67.6
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 8.7e-119 431.0 286 71.3
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 9.0e-116 421.0 325 65.2
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 2.1e-112 409.8 274 71.9
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 4.5e-107 392.1 291 64.3
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 4.2e-105 385.6 284 64.8
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 7.9e-104 381.3 242 74.0
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 5.9e-99 365.2 252 72.2
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 5.5e-97 358.6 283 64.7
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 1.2e-96 357.5 285 60.0
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 2.7e-96 356.3 294 59.2
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 3.0e-95 352.8 257 67.7
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 1.3e-93 347.4 245 69.0
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 5.0e-82 308.9 290 55.2
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 2.9e-74 283.1 160 81.9
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 1.5e-73 280.8 168 78.6
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 1.2e-59 234.6 230 53.9
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 2.5e-57 226.9 137 75.2
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 1.2e-56 224.6 147 74.8
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 1.4e-52 211.1 127 77.2
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.7e-51 206.8 325 41.5
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 5.1e-50 202.6 147 69.4
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 1.8e-47 194.1 147 68.0
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 9.2e-44 181.8 100 79.0
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 1.0e-42 178.3 147 62.6
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.9e-41 174.1 100 77.0
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 2.1e-32 144.1 110 62.7
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 7.1e-28 129.0 72 81.9
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 4.5e-22 109.8 64 79.7
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 5.8e-22 109.4 67 76.1
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 5.8e-22 109.4 67 76.1
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 1.4e-20 104.8 75 65.3
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 2.3e-18 97.4 72 62.5
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 1.6e-16 91.3 45 88.9
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 3.7e-16 90.1 45 88.9
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 6.2e-16 89.4 44 90.9
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 3.2e-12 77.0 41 78.0
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 9.3e-12 75.5 35 88.6
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 2.5e-09 67.4 37 86.5
BcaB03g16084 Brassica carinata HOM05D004804 ORTHO05D001170 5.3e-07 59.7 51 60.8
CBR_g29560 Chara braunii HOM05D002780 ORTHO05D005882 1.5e-06 58.2 117 29.1
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 2.0e-06 57.8 58 53.4


User provided reference genes

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