Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p28590 Brassica napus HOM05D004837 ORTHO05D005741 7.8e-33 143.3 76 100.0
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 3.6e-30 134.4 78 94.9
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 8.9e-29 129.8 78 92.3
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 2.1e-14 82.0 82 62.2
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 2.1e-14 82.0 82 62.2
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 2.1e-14 82.0 82 62.2
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 3.6e-14 81.3 82 61.0
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 1.1e-13 79.7 82 61.0
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 1.1e-13 79.7 78 65.4
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 1.1e-13 79.7 82 59.8
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 1.1e-13 79.7 82 59.8
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 1.4e-13 79.3 82 59.8
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 1.4e-13 79.3 82 59.8
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 1.4e-13 79.3 82 59.8
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 2.4e-13 78.6 82 59.8
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 3.1e-13 78.2 82 59.8
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 3.1e-13 78.2 82 59.8
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 3.1e-13 78.2 82 59.8
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 4.0e-13 77.8 82 59.8
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 5.2e-13 77.4 78 64.1
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 6.8e-13 77.0 78 62.8
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 6.8e-13 77.0 78 62.8
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 6.8e-13 77.0 82 58.5
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 6.8e-13 77.0 82 59.8
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 6.8e-13 77.0 82 58.5
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 6.8e-13 77.0 82 59.8
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 2.0e-12 75.5 82 57.3
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 2.6e-12 75.1 82 58.5
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 2.6e-12 75.1 82 58.5
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 2.6e-12 75.1 78 60.3
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 2.6e-12 75.1 78 59.0
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 3.4e-12 74.7 78 61.5
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 3.4e-12 74.7 82 57.3
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 5.8e-12 73.9 82 54.9
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 7.6e-12 73.6 75 56.0
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 9.9e-12 73.2 82 57.3
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 9.9e-12 73.2 82 57.3
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 9.9e-12 73.2 82 57.3
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 9.9e-12 73.2 82 57.3
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 1.7e-11 72.4 82 57.3
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 1.7e-11 72.4 82 54.9
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 2.2e-11 72.0 78 57.7
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.9e-11 71.6 82 56.1
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 4.9e-11 70.9 78 59.0
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 6.4e-11 70.5 82 54.9
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 6.4e-11 70.5 82 48.8
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 8.4e-11 70.1 82 54.9
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 1.1e-10 69.7 78 56.4
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 2.4e-10 68.6 82 53.7
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 4.1e-10 67.8 50 78.0
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 7.1e-10 67.0 82 52.4
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 1.2e-09 66.2 82 53.7
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 1.2e-09 66.2 82 53.7
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 1.2e-09 66.2 76 55.3
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 1.2e-09 66.2 82 51.2
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.2e-09 66.2 97 48.5
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.2e-09 66.2 89 52.8
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 2.1e-09 65.5 78 55.1
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 2.7e-09 65.1 78 57.7
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 2.7e-09 65.1 78 57.7
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 2.7e-09 65.1 78 57.7
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 2.7e-09 65.1 78 57.7
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 2.7e-09 65.1 78 57.7
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 2.7e-09 65.1 78 57.7
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 4.6e-09 64.3 80 55.0
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 4.6e-09 64.3 82 52.4
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 6.0e-09 63.9 78 56.4
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 6.0e-09 63.9 78 56.4
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 6.0e-09 63.9 78 56.4
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 6.0e-09 63.9 78 56.4
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 1.7e-08 62.4 82 52.4
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 1.7e-08 62.4 82 52.4
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 2.3e-08 62.0 78 51.3
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 2.3e-08 62.0 82 51.2
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 3.9e-08 61.2 82 50.0
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 3.9e-08 61.2 82 52.4
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 5.1e-08 60.8 82 51.2
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 6.6e-08 60.5 82 51.2
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 6.6e-08 60.5 82 51.2
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 1.1e-07 59.7 84 47.6
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 1.9e-07 58.9 34 91.2
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 1.9e-07 58.9 82 50.0
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 2.5e-07 58.5 82 48.8
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 4.3e-07 57.8 82 48.8
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 4.3e-07 57.8 82 48.8
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 4.3e-07 57.8 78 51.3
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 5.6e-07 57.4 78 52.6
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 5.6e-07 57.4 78 52.6
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 5.6e-07 57.4 34 88.2
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 5.6e-07 57.4 34 88.2
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 5.6e-07 57.4 82 47.6
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 5.6e-07 57.4 82 48.8
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 5.6e-07 57.4 82 50.0
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 7.3e-07 57.0 78 51.3
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 9.6e-07 56.6 82 47.6
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 1.2e-06 56.2 82 48.8
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 1.6e-06 55.8 78 50.0
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 1.6e-06 55.8 82 47.6
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 1.6e-06 55.8 82 47.6
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 6.2e-06 53.9 82 46.3
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 6.2e-06 53.9 82 46.3
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 6.2e-06 53.9 34 85.3


User provided reference genes

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