Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p28130 Brassica napus HOM05D005449 ORTHO05D006916 1.5e-62 243.0 157 100.0
BraA09t40054Z Brassica rapa HOM05D005449 ORTHO05D006916 9.7e-62 240.4 157 98.7
BolC8t50425H Brassica oleracea HOM05D005449 ORTHO05D006916 1.6e-61 239.6 157 98.1
A09p45940 Brassica napus HOM05D005449 ORTHO05D006916 1.1e-60 236.9 157 96.8
BcaB01g00336 Brassica carinata HOM05D005449 ORTHO05D006916 9.0e-60 233.8 157 96.8
AL5G33630 Arabidopsis lyrata HOM05D005449 ORTHO05D006916 5.0e-58 228.0 157 76.4
CARHR162730 Cardamine hirsuta HOM05D005449 ORTHO05D006916 4.6e-56 221.5 157 89.2
Carub.0005s1933 Capsella rubella HOM05D005449 ORTHO05D006916 1.0e-55 220.3 157 88.5
Thhalv10010784m.g Eutrema salsugineum HOM05D005449 ORTHO05D006916 2.3e-55 219.2 157 88.5
Sp5g09480 Schrenkiella parvula HOM05D005449 ORTHO05D006916 3.3e-54 215.3 157 87.9
AT3G52860 Arabidopsis thaliana HOM05D005449 ORTHO05D006916 1.7e-50 203.0 120 85.0
THA.LOC104817488 Tarenaya hassleriana HOM05D005449 ORTHO05D006916 2.6e-38 162.5 133 64.7
Cfa005902 Carpinus fangiana HOM05D005449 ORTHO05D006916 2.9e-34 149.1 119 65.5
DCAR_002842 Daucus carota HOM05D005449 ORTHO05D006916 5.0e-34 148.3 119 68.1
CSS0004919 Camellia sinensis var. sinensis HOM05D005449 ORTHO05D006916 1.5e-33 146.7 136 59.6
Dinv33060 Davidia involucrata HOM05D005449 ORTHO05D006916 1.9e-33 146.4 119 64.7
Rhsim06G0059700 Rhododendron simsii HOM05D005449 ORTHO05D006916 2.5e-33 146.0 136 59.6
Prupe.8G140700 Prunus persica HOM05D005449 ORTHO05D006916 3.2e-33 145.6 119 64.7
Migut.D00146 Erythranthe guttata HOM05D005449 ORTHO05D006916 5.5e-33 144.8 119 64.7
EL10Ac7g17526 Beta vulgaris HOM05D005449 ORTHO05D006916 7.2e-33 144.4 136 58.8
SGA_v2.0_scaffold1G00359 Striga asiatica HOM05D005449 ORTHO05D006916 7.2e-33 144.4 140 56.4
Dinv44016 Davidia involucrata HOM05D005449 ORTHO05D006916 1.2e-32 143.7 119 63.0
FAN20G1025 Fragaria x ananassa HOM05D005449 ORTHO05D006916 1.2e-32 143.7 119 64.7
COL.COLO4_23333 Corchorus olitorius HOM05D005449 ORTHO05D006916 1.6e-32 143.3 136 59.6
Lj4g0006553 Lotus japonicus HOM05D005449 ORTHO05D006916 1.6e-32 143.3 131 58.0
Lalb_Chr03g0036381 Lupinus albus HOM05D005449 ORTHO05D006916 2.7e-32 142.5 136 56.6
Nn3g21512 Nelumbo nucifera HOM05D005449 ORTHO05D006916 2.7e-32 142.5 119 63.9
Potri.014G127900 Populus trichocarpa HOM05D005449 ORTHO05D006916 2.7e-32 142.5 119 63.9
Hund11156 Selenicereus undatus HOM05D005449 ORTHO05D006916 2.7e-32 142.5 119 63.0
Ah.08g213380 Amaranthus hybridus HOM05D005449 ORTHO05D006916 3.6e-32 142.1 139 56.8
Hma1.2p1_1986F.1_g310070 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 3.6e-32 142.1 119 63.0
Hma1.2p1_2044F.1_g312372 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 3.6e-32 142.1 119 63.0
RcHm_v2.0_Chr6g0252971 Rosa chinensis HOM05D005449 ORTHO05D006916 3.6e-32 142.1 119 63.9
Aqoxy1G00207 Aquilegia oxysepala HOM05D005449 ORTHO05D006916 4.7e-32 141.7 137 57.7
CANSAT25G1565 Cannabis sativa HOM05D005449 ORTHO05D006916 6.1e-32 141.4 131 58.0
Cpa.g.sc9.253 Carica papaya HOM05D005449 ORTHO05D006916 6.1e-32 141.4 130 59.2
Cc01_g20940 Coffea canephora HOM05D005449 ORTHO05D006916 6.1e-32 141.4 119 63.0
FAN15G2928 Fragaria x ananassa HOM05D005449 ORTHO05D006916 6.1e-32 141.4 119 63.9
Thecc.01G301700 Theobroma cacao HOM05D005449 ORTHO05D006916 6.1e-32 141.4 119 63.9
TWI14G0435 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 6.1e-32 141.4 119 63.9
CsaV3_4G000480 Cucumis sativus L. HOM05D005449 ORTHO05D006916 8.0e-32 141.0 119 63.9
QL12p028306 Quercus lobata HOM05D005449 ORTHO05D006916 8.0e-32 141.0 118 61.9
TAR636G0282 Trochodendron aralioides HOM05D005449 ORTHO05D006916 8.0e-32 141.0 119 63.0
Ca_17681_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 1.0e-31 140.6 130 56.9
Ca_29605_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 1.0e-31 140.6 130 56.9
MELO3C017987.2 Cucumis melo HOM05D005449 ORTHO05D006916 1.0e-31 140.6 132 59.1
Duzib138G1099 Durio zibethinus HOM05D005449 ORTHO05D006916 1.0e-31 140.6 119 63.0
FvH4_2g03920 Fragaria vesca HOM05D005449 ORTHO05D006916 1.0e-31 140.6 119 63.9
RcHm_v2.0_Chr6g0252941 Rosa chinensis HOM05D005449 ORTHO05D006916 1.0e-31 140.6 119 63.9
Sed0024679 Sechium edule HOM05D005449 ORTHO05D006916 1.0e-31 140.6 119 64.7
FAN27G2298 Fragaria x ananassa HOM05D005449 ORTHO05D006916 1.4e-31 140.2 119 63.0
MD05G1096300 Malus domestica HOM05D005449 ORTHO05D006916 1.4e-31 140.2 119 63.0
Oeu024404.1 Olea europaea HOM05D005449 ORTHO05D006916 1.4e-31 140.2 119 63.0
Oeu054120.1 Olea europaea HOM05D005449 ORTHO05D006916 1.8e-31 139.8 119 62.2
Medtr8g092180 Medicago truncatula HOM05D005449 ORTHO05D006916 2.3e-31 139.4 133 57.1
Phvul.002G266700 Phaseolus vulgaris HOM05D005449 ORTHO05D006916 3.0e-31 139.0 134 56.7
FAN22G2041 Fragaria x ananassa HOM05D005449 ORTHO05D006916 4.0e-31 138.7 119 62.2
Glyma.05G185600 Glycine max HOM05D005449 ORTHO05D006916 4.0e-31 138.7 131 56.5
Gohir.A12G129900 Gossypium hirsutum HOM05D005449 ORTHO05D006916 4.0e-31 138.7 136 57.4
Manes.05G061600 Manihot esculenta HOM05D005449 ORTHO05D006916 4.0e-31 138.7 137 56.9
VMungo0251G2862 Vigna mungo HOM05D000587 ORTHO05D000929 4.0e-31 138.7 134 66.4
Ciclev10022754m.g Citrus clementina HOM05D005449 ORTHO05D006916 5.2e-31 138.3 134 56.7
Gohir.D12G133700 Gossypium hirsutum HOM05D005449 ORTHO05D006916 5.2e-31 138.3 136 57.4
Gorai.008G144700 Gossypium raimondii HOM05D005449 ORTHO05D006916 5.2e-31 138.3 136 57.4
PSO675G2222 Papaver somniferum HOM05D005449 ORTHO05D006916 5.2e-31 138.3 122 60.7
Sabra14G0095000 Salix brachista HOM05D005449 ORTHO05D006916 5.2e-31 138.3 117 63.2
FvH4_4g11510 Fragaria vesca HOM05D005449 ORTHO05D006916 6.7e-31 137.9 119 61.3
TPR.G2165 Trifolium pratense HOM05D005449 ORTHO05D006916 8.8e-31 137.5 119 65.5
Duzib211G0575 Durio zibethinus HOM05D005449 ORTHO05D006916 1.2e-30 137.1 140 56.4
FAN07G2516 Fragaria x ananassa HOM05D005449 ORTHO05D006916 1.2e-30 137.1 119 61.3
Glyma.08G143600 Glycine max HOM05D005449 ORTHO05D006916 1.2e-30 137.1 119 64.7
CiPaw.07G110200 Carya illinoinensis HOM05D005449 ORTHO05D006916 1.5e-30 136.7 119 62.2
HanXRQChr06g0163691 Helianthus annuus HOM05D005449 ORTHO05D006916 1.5e-30 136.7 124 59.7
PGR119G1363 Punica granatum HOM05D005449 ORTHO05D006916 1.5e-30 136.7 132 59.8
CDE05G2918 Ceratophyllum demersum HOM05D005449 ORTHO05D006916 2.0e-30 136.3 132 56.1
RcHm_v2.0_Chr4g0408421 Rosa chinensis HOM05D005449 ORTHO05D006916 2.0e-30 136.3 119 62.2
CiPaw.08G094600 Carya illinoinensis HOM05D005449 ORTHO05D006916 2.6e-30 136.0 119 58.8
Lsat_1_v5_gn_8_164201 Lactuca sativa HOM05D005449 ORTHO05D006916 3.3e-30 135.6 142 54.2
Atru.chr5.1135 Acer truncatum HOM05D005449 ORTHO05D006916 4.4e-30 135.2 82 82.9
Eucgr.F02473 Eucalyptus grandis HOM05D005449 ORTHO05D006916 4.4e-30 135.2 136 57.4
Actinidia21206 Actinidia chinensis HOM05D005449 ORTHO05D006916 5.7e-30 134.8 119 61.3
Nitab4.5_0008438g0020 Nicotiana tabacum HOM05D005449 ORTHO05D006916 5.7e-30 134.8 128 58.6
HPP92_010681 Vanilla planifolia HOM05D005449 ORTHO05D006916 5.7e-30 134.8 130 69.2
GSVIVG01028030001 Vitis vinifera HOM05D005449 ORTHO05D006916 7.5e-30 134.4 111 64.9
Psat7g049640 Pisum sativum HOM05D005449 ORTHO05D006916 9.7e-30 134.0 119 64.7
unitig_26.g10174 Utricularia gibba HOM05D005449 ORTHO05D006916 9.7e-30 134.0 118 61.9
ECA236G0849 Erigeron canadensis HOM05D005449 ORTHO05D006916 2.2e-29 132.9 133 54.9
Solyc08g074670.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 2.8e-29 132.5 119 59.7
Sopen08g023260 Solanum pennellii HOM05D005449 ORTHO05D006916 2.8e-29 132.5 119 59.7
ClCG10G010560 Citrullus lanatus HOM05D005449 ORTHO05D006916 3.7e-29 132.1 131 58.0
Sopen08g001890 Solanum pennellii HOM05D005449 ORTHO05D006916 4.8e-29 131.7 128 58.6
Solyc08g005920.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 6.3e-29 131.3 128 58.6
vmacro09952 Vaccinium macrocarpon HOM05D005449 ORTHO05D006916 6.3e-29 131.3 143 52.4
MSTRG.21637 Avicennia marina HOM05D005449 ORTHO05D006916 8.2e-29 131.0 137 54.7
MBI18_g24865_MAGBIO Magnolia biondii HOM05D005449 ORTHO05D006916 8.2e-29 131.0 134 57.5
Peaxi162Scf00045g01343 Petunia axillaris HOM05D005449 ORTHO05D006916 8.2e-29 131.0 128 56.2
RcHm_v2.0_Chr6g0264541 Rosa chinensis HOM05D005449 ORTHO05D006916 8.2e-29 131.0 82 80.5
PGSC0003DMG400018921 Solanum tuberosum HOM05D005449 ORTHO05D006916 8.2e-29 131.0 119 58.8
TWI59G1340 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 8.2e-29 131.0 119 59.7
arahy.Tifrunner.gnm1.ann1.X8E93Z Arachis hypogaea HOM05D005449 ORTHO05D006916 1.1e-28 130.6 119 58.0
arahy.Tifrunner.gnm1.ann1.YB8ZH2 Arachis hypogaea HOM05D005449 ORTHO05D006916 1.1e-28 130.6 119 58.0
Sc04g0009560 Simmondsia chinensis HOM05D005449 ORTHO05D006916 2.4e-28 129.4 119 58.0
CAN.G857.16 Capsicum annuum HOM05D005449 ORTHO05D006916 4.1e-28 128.6 119 58.0
Peaxi162Scf00445g00079 Petunia axillaris HOM05D005449 ORTHO05D006916 9.1e-28 127.5 142 51.4
Nitab4.5_0002276g0010 Nicotiana tabacum HOM05D005449 ORTHO05D006916 2.7e-27 125.9 115 59.1
Rhsim09G0186400 Rhododendron simsii HOM05D005449 ORTHO05D006916 2.7e-27 125.9 146 52.1
PGSC0003DMG400004469 Solanum tuberosum HOM05D005449 ORTHO05D006916 2.7e-27 125.9 128 57.8
Os05g0154900 Oryza sativa ssp. japonica HOM05D005449 ORTHO05D006916 5.9e-27 124.8 140 52.9
ATR0582G023 Amborella trichopoda HOM05D005449 ORTHO05D006916 2.2e-26 122.9 119 55.5
Zm00001eb346090 Zea mays HOM05D005449 ORTHO05D006916 6.5e-26 121.3 120 60.0
Nitab4.5_0000860g0030 Nicotiana tabacum HOM05D005449 ORTHO05D006916 1.9e-25 119.8 128 53.9
Lsat_1_v5_gn_7_53001 Lactuca sativa HOM05D005449 ORTHO05D006916 2.5e-25 119.4 97 67.0
AUR62008679 Chenopodium quinoa HOM05D005449 ORTHO05D006916 1.2e-24 117.1 119 59.7
HanXRQChr06g0163731 Helianthus annuus HOM05D005449 ORTHO05D006916 1.2e-24 117.1 82 73.2
SEGI_14448 Sequoiadendron giganteum HOM05D005449 ORTHO05D006916 3.6e-24 115.5 86 67.4
HanXRQChr10g0316901 Helianthus annuus HOM05D005449 ORTHO05D006916 1.0e-23 114.0 87 66.7
FvH4_7g29690 Fragaria vesca HOM05D005449 ORTHO05D006916 1.8e-23 113.2 74 77.0
Pp3c14_5880 Physcomitrium patens HOM05D005449 ORTHO05D006916 2.6e-22 109.4 118 50.0
BcaC07g39651 Brassica carinata HOM05D001272 ORTHO05D001843 3.7e-21 105.5 85 94.1
AUR62025565 Chenopodium quinoa HOM05D005449 ORTHO05D006916 8.3e-21 104.4 156 52.6
PSO675G2923 Papaver somniferum HOM05D005449 ORTHO05D006916 2.4e-20 102.8 74 68.9
SMO367G0046 Selaginella moellendorffii HOM05D005449 ORTHO05D006916 3.1e-20 102.4 120 46.7
Ciclev10033890m.g Citrus clementina HOM05D005449 ORTHO05D006916 1.5e-17 93.6 150 42.7
Mapoly0162s0020 Marchantia polymorpha HOM05D005449 ORTHO05D006916 2.5e-17 92.8 81 58.0
AagrBONN_evm.TU.Sc2ySwM_117.989 Anthoceros agrestis HOM05D005449 ORTHO05D006916 2.6e-14 82.8 90 50.0
Haze_04950 Corylus avellana HOM05D005449 ORTHO05D006916 2.6e-14 82.8 84 54.8
MD10G1102600 Malus domestica HOM05D005449 ORTHO05D006916 3.4e-14 82.4 86 52.3
Zm00001eb085090 Zea mays HOM05D005449 ORTHO05D006916 2.2e-13 79.7 112 44.6
Atru.chr11.2437 Acer truncatum HOM05D005449 ORTHO05D006916 1.1e-12 77.4 146 34.2
Zm00001eb340530 Zea mays HOM05D005449 ORTHO05D006916 1.4e-12 77.0 93 49.5
Aa31LG10G7880 Aethionema arabicum HOM05D005449 ORTHO05D006916 1.8e-12 76.6 74 87.8
Actinidia07783 Actinidia chinensis HOM05D005449 ORTHO05D006916 4.3e-09 65.5 74 50.0
FAN17G0623 Fragaria x ananassa HOM05D005449 ORTHO05D006916 5.6e-09 65.1 34 88.2
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 5.6e-09 65.1 46 65.2
Hma1.2p1_0494F.1_g165230 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.5e-06 57.0 33 75.8


User provided reference genes

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