Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 5.7e-29 130.2 64 100.0
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 5.7e-29 130.2 64 100.0
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 5.7e-29 130.2 64 100.0
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 5.7e-29 130.2 64 100.0
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 5.7e-29 130.2 64 100.0
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 5.7e-29 130.2 64 100.0
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 3.1e-27 124.4 61 98.4
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 3.1e-27 124.4 61 98.4
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 4.1e-27 124.0 61 96.7
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 4.1e-27 124.0 61 96.7
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 4.1e-27 124.0 61 96.7
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 5.4e-27 123.6 61 95.1
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 7.0e-27 123.2 61 96.7
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 1.2e-26 122.5 61 96.7
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 1.3e-25 119.0 60 91.7
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 6.6e-25 116.7 60 90.0
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 6.6e-25 116.7 60 90.0
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 6.6e-25 116.7 60 90.0
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 6.6e-25 116.7 60 90.0
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.5e-24 115.5 62 90.3
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 1.5e-24 115.5 62 90.3
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 1.9e-24 115.2 62 83.9
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 4.3e-24 114.0 62 90.3
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 5.6e-24 113.6 62 90.3
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 7.3e-24 113.2 60 90.0
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 9.5e-24 112.8 62 83.9
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 9.5e-24 112.8 62 82.3
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 9.5e-24 112.8 62 87.1
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 9.5e-24 112.8 62 88.7
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 9.5e-24 112.8 60 88.3
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 1.6e-23 112.1 61 86.9
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 1.6e-23 112.1 62 82.3
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 1.6e-23 112.1 62 83.9
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 2.1e-23 111.7 62 88.7
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 2.1e-23 111.7 62 87.1
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.1e-23 111.7 62 83.9
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.1e-23 111.7 62 83.9
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.1e-23 111.7 62 83.9
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.1e-23 111.7 62 83.9
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 2.1e-23 111.7 62 85.5
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 2.1e-23 111.7 60 88.3
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 3.6e-23 110.9 62 85.5
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 4.7e-23 110.5 62 82.3
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.7e-23 110.5 62 82.3
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 6.1e-23 110.2 62 80.6
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 6.1e-23 110.2 60 86.7
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 6.1e-23 110.2 60 88.3
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 6.1e-23 110.2 62 82.3
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 8.0e-23 109.8 62 87.1
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 8.0e-23 109.8 62 79.0
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 8.0e-23 109.8 62 85.5
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 8.0e-23 109.8 62 85.5
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 8.0e-23 109.8 60 81.7
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 8.0e-23 109.8 60 83.3
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.0e-22 109.4 60 83.3
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 1.4e-22 109.0 62 82.3
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 1.8e-22 108.6 62 80.6
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 1.8e-22 108.6 62 82.3
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 2.3e-22 108.2 61 83.6
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 2.3e-22 108.2 62 83.9
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 2.3e-22 108.2 60 81.7
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 3.0e-22 107.8 60 83.3
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 3.0e-22 107.8 60 81.7
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 3.0e-22 107.8 62 83.9
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 4.0e-22 107.5 62 83.9
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 4.0e-22 107.5 62 83.9
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 4.0e-22 107.5 62 83.9
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 4.0e-22 107.5 61 75.4
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 4.0e-22 107.5 61 75.4
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 5.2e-22 107.1 60 81.7
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 5.2e-22 107.1 62 82.3
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 5.2e-22 107.1 62 83.9
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 5.2e-22 107.1 60 80.0
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 5.2e-22 107.1 64 75.0
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 6.8e-22 106.7 62 83.9
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 6.8e-22 106.7 62 77.4
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 6.8e-22 106.7 62 83.9
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 6.8e-22 106.7 60 81.7
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 6.8e-22 106.7 60 81.7
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 6.8e-22 106.7 62 82.3
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 6.8e-22 106.7 62 82.3
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 6.8e-22 106.7 62 82.3
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 6.8e-22 106.7 62 82.3
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 6.8e-22 106.7 62 82.3
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 8.9e-22 106.3 61 77.0
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 8.9e-22 106.3 62 79.0
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 1.2e-21 105.9 60 81.7
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 1.2e-21 105.9 62 82.3
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.5e-21 105.5 60 80.0
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 2.0e-21 105.1 62 82.3
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 2.0e-21 105.1 60 78.3
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 2.0e-21 105.1 62 75.8
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 2.0e-21 105.1 64 73.4
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 2.6e-21 104.8 60 80.0
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 2.6e-21 104.8 62 79.0
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 2.6e-21 104.8 62 82.3
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 2.6e-21 104.8 62 74.2
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 4.4e-21 104.0 60 81.7
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 5.7e-21 103.6 62 75.8
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 5.7e-21 103.6 60 80.0
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 7.5e-21 103.2 62 79.0
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 7.5e-21 103.2 65 78.5
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 7.5e-21 103.2 62 75.8
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 7.5e-21 103.2 60 78.3
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 7.5e-21 103.2 62 75.8
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 7.5e-21 103.2 62 75.8
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.3e-20 102.4 60 76.7
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 1.3e-20 102.4 60 81.7
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 1.3e-20 102.4 60 81.7
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 1.3e-20 102.4 62 77.4
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 1.3e-20 102.4 62 77.4
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 1.3e-20 102.4 62 80.6
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 1.3e-20 102.4 60 80.0
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 1.3e-20 102.4 62 80.6
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.7e-20 102.1 60 76.7
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.7e-20 102.1 60 76.7
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 2.9e-20 101.3 60 76.7
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 2.9e-20 101.3 58 79.3
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 3.7e-20 100.9 62 75.8
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 3.7e-20 100.9 62 77.4
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 4.9e-20 100.5 62 77.4
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 4.9e-20 100.5 58 79.3
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 8.3e-20 99.8 62 77.4
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 8.3e-20 99.8 70 71.4
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 5.4e-19 97.1 60 75.0
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 5.4e-19 97.1 58 74.1
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 7.0e-19 96.7 60 71.7
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 1.6e-18 95.5 60 71.7
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 2.7e-18 94.7 60 75.0
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 2.7e-18 94.7 60 75.0
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 3.5e-18 94.4 61 70.5
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 3.5e-18 94.4 60 73.3
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 3.5e-18 94.4 79 62.0
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 1.3e-17 92.4 47 91.5
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 1.7e-17 92.0 60 71.7
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 1.7e-17 92.0 56 73.2
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 2.3e-17 91.7 84 57.1
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 3.0e-17 91.3 60 70.0
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 3.9e-17 90.9 71 66.2
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 5.0e-17 90.5 63 68.3
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 5.0e-17 90.5 90 54.4
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 1.9e-16 88.6 86 55.8
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 2.5e-16 88.2 62 69.4
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 7.3e-16 86.7 89 51.7
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 7.3e-16 86.7 90 50.0
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 6.2e-15 83.6 45 88.9
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 1.0e-14 82.8 45 84.4
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 1.0e-14 82.8 56 66.1
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.4e-14 82.4 45 82.2
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 1.4e-14 82.4 43 88.4
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 2.3e-14 81.6 45 82.2
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 2.3e-14 81.6 45 80.0
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 4.0e-14 80.9 45 80.0
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 4.0e-14 80.9 60 61.7
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 5.2e-14 80.5 45 80.0
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 6.8e-14 80.1 45 82.2
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 1.2e-13 79.3 43 79.1
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 1.2e-13 79.3 113 41.6
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 1.2e-13 79.3 44 81.8
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 1.5e-13 79.0 45 75.6
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 2.0e-13 78.6 58 58.6
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 2.6e-13 78.2 46 76.1
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 3.4e-13 77.8 43 81.4
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 5.8e-13 77.0 44 79.5
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 1.3e-12 75.9 45 73.3
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 1.3e-12 75.9 45 73.3
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 1.7e-12 75.5 62 53.2
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 1.7e-12 75.5 45 75.6
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 1.7e-12 75.5 50 68.0
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 2.9e-12 74.7 58 60.3
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 8.3e-12 73.2 40 85.0
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 4.1e-11 70.9 44 65.9
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 2.0e-10 68.6 38 76.3
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.0e-10 68.6 46 67.4
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.5e-10 67.8 46 69.6
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 1.0e-09 66.2 43 65.1
MCO16G664 Micromonas commoda HOM05D003756 ORTHO05D004304 3.3e-08 61.2 61 50.8
Nn2g14157 Nelumbo nucifera HOM05D003756 ORTHO05D004304 2.1e-07 58.5 37 73.0
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 8.1e-07 56.6 46 58.7
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 8.1e-07 56.6 46 58.7
Cre11.g468950 Chlamydomonas reinhardtii HOM05D003756 ORTHO05D004304 1.4e-06 55.8 53 39.6
PRCOL_00006894 Prasinoderma coloniale HOM05D003756 ORTHO05D004304 4.0e-06 54.3 60 45.0
Aa31LG10G7740 Aethionema arabicum HOM05D003756 ORTHO05D004304 5.2e-06 53.9 27 88.9
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 5.2e-06 53.9 33 75.8


User provided reference genes

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