Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 1.0e-75 286.6 140 100.0
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 2.5e-69 265.4 132 93.9
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 3.0e-54 215.3 107 93.5
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 4.3e-37 158.3 83 88.0
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 4.3e-37 158.3 83 88.0
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 5.6e-37 157.9 83 86.7
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 9.6e-37 157.1 83 86.7
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 1.6e-36 156.4 83 86.7
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 1.6e-36 156.4 83 86.7
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 2.1e-36 156.0 83 86.7
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 2.1e-36 156.0 83 86.7
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 3.6e-36 155.2 83 85.5
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 3.6e-36 155.2 83 85.5
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 4.8e-36 154.8 83 85.5
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 4.8e-36 154.8 83 85.5
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 4.8e-36 154.8 83 84.3
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 1.1e-35 153.7 84 86.9
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 1.1e-35 153.7 84 86.9
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 1.1e-35 153.7 84 86.9
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 1.1e-35 153.7 84 86.9
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 1.1e-35 153.7 84 86.9
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 1.4e-35 153.3 78 89.7
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 1.4e-35 153.3 78 89.7
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 1.8e-35 152.9 83 84.3
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 1.8e-35 152.9 83 85.5
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.2e-34 150.2 116 63.8
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 1.5e-34 149.8 83 81.9
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 4.5e-34 148.3 83 80.7
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 5.8e-34 147.9 83 78.3
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 9.9e-34 147.1 83 78.3
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 1.3e-33 146.7 83 79.5
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 2.2e-33 146.0 83 78.3
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 2.2e-33 146.0 83 80.7
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 2.2e-33 146.0 83 80.7
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 2.2e-33 146.0 83 79.5
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 2.9e-33 145.6 83 79.5
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 3.8e-33 145.2 83 78.3
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 3.8e-33 145.2 83 78.3
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 4.9e-33 144.8 83 78.3
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 6.4e-33 144.4 83 77.1
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 8.4e-33 144.1 83 78.3
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 8.4e-33 144.1 83 78.3
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 8.4e-33 144.1 83 78.3
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 8.4e-33 144.1 83 78.3
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 1.1e-32 143.7 83 77.1
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 1.1e-32 143.7 83 77.1
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 1.1e-32 143.7 83 75.9
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.4e-32 143.3 83 78.3
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 1.4e-32 143.3 83 77.1
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 1.9e-32 142.9 83 77.1
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 1.9e-32 142.9 83 74.7
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 2.4e-32 142.5 83 75.9
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 2.4e-32 142.5 83 77.1
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 2.4e-32 142.5 83 77.1
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 2.4e-32 142.5 83 79.5
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 3.2e-32 142.1 83 75.9
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 4.2e-32 141.7 83 75.9
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 4.2e-32 141.7 83 77.1
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 4.2e-32 141.7 83 79.5
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 4.2e-32 141.7 83 78.3
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 5.4e-32 141.4 83 75.9
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 7.1e-32 141.0 83 77.1
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 7.1e-32 141.0 83 75.9
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 7.1e-32 141.0 83 75.9
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 9.3e-32 140.6 83 74.7
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 9.3e-32 140.6 83 75.9
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.2e-31 140.2 83 75.9
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 1.2e-31 140.2 83 75.9
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 1.2e-31 140.2 83 77.1
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 1.2e-31 140.2 83 74.7
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 1.6e-31 139.8 83 75.9
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 2.1e-31 139.4 78 82.1
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 2.1e-31 139.4 83 77.1
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 2.1e-31 139.4 83 74.7
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 2.7e-31 139.0 83 74.7
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 3.5e-31 138.7 83 75.9
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 3.5e-31 138.7 83 73.5
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 3.5e-31 138.7 78 82.1
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 4.6e-31 138.3 83 73.5
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 4.6e-31 138.3 83 78.3
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 4.6e-31 138.3 83 78.3
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 6.0e-31 137.9 83 75.9
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 6.0e-31 137.9 83 74.7
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 6.0e-31 137.9 83 74.7
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 6.0e-31 137.9 83 75.9
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 7.9e-31 137.5 83 75.9
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 7.9e-31 137.5 83 75.9
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 7.9e-31 137.5 83 74.7
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.0e-30 137.1 83 75.9
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.3e-30 136.7 83 74.7
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.3e-30 136.7 83 74.7
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.3e-30 136.7 83 74.7
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 1.3e-30 136.7 83 74.7
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 1.3e-30 136.7 83 73.5
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 1.3e-30 136.7 83 75.9
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 1.3e-30 136.7 83 72.3
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 1.8e-30 136.3 83 73.5
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 1.8e-30 136.3 83 72.3
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 2.3e-30 136.0 83 73.5
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 2.3e-30 136.0 83 73.5
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 3.0e-30 135.6 83 73.5
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 3.0e-30 135.6 83 73.5
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 3.9e-30 135.2 83 73.5
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 3.9e-30 135.2 83 73.5
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 5.1e-30 134.8 83 72.3
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 5.1e-30 134.8 83 73.5
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 5.1e-30 134.8 83 72.3
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 5.1e-30 134.8 83 72.3
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 5.1e-30 134.8 83 72.3
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 6.7e-30 134.4 83 73.5
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 8.7e-30 134.0 83 73.5
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 8.7e-30 134.0 83 72.3
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 8.7e-30 134.0 83 72.3
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 8.7e-30 134.0 83 73.5
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 8.7e-30 134.0 83 73.5
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 1.1e-29 133.7 83 73.5
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.1e-29 133.7 83 73.5
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 1.1e-29 133.7 83 73.5
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 1.5e-29 133.3 83 73.5
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 5.6e-29 131.3 83 72.3
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 5.6e-29 131.3 83 72.3
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 7.4e-29 131.0 83 73.5
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 9.6e-29 130.6 83 71.1
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 9.6e-29 130.6 83 71.1
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 9.6e-29 130.6 83 69.9
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.3e-28 130.2 83 69.9
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 1.6e-28 129.8 83 71.1
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 2.1e-28 129.4 83 72.3
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 2.8e-28 129.0 83 71.1
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 6.2e-28 127.9 83 69.9
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 8.1e-28 127.5 83 69.9
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 8.1e-28 127.5 83 69.9
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 1.8e-27 126.3 83 68.7
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 3.1e-27 125.6 83 68.7
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 9.0e-27 124.0 83 66.3
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 1.2e-26 123.6 83 66.3
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 1.5e-26 123.2 78 69.2
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 2.6e-26 122.5 83 68.7
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 2.6e-26 122.5 83 65.1
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 1.3e-25 120.2 78 69.2
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 2.9e-25 119.0 83 65.1
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 6.4e-25 117.9 83 63.9
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.2e-23 113.6 83 60.2
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 1.6e-23 113.2 56 89.3
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 1.6e-23 113.2 77 62.3
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 7.9e-23 110.9 65 81.5
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 1.8e-22 109.8 66 75.8
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 5.1e-22 108.2 83 56.6
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 5.1e-22 108.2 83 56.6
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 1.5e-21 106.7 65 80.0
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 1.3e-20 103.6 54 81.5
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 1.2e-18 97.1 83 54.2
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 2.2e-17 92.8 136 39.7
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 2.9e-17 92.4 83 51.8
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 1.3e-14 83.6 83 50.6
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 1.0e-09 67.4 45 62.2
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 5.0e-09 65.1 47 53.2
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 6.5e-09 64.7 46 54.3
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 1.4e-08 63.5 30 90.0
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 3.2e-08 62.4 47 55.3
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 1.2e-07 60.5 46 54.3
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 2.3e-06 56.2 30 76.7


User provided reference genes

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