Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p27470 Brassica napus HOM05D007333 ORTHO05D008874 1.1e-72 276.6 138 100.0
BcaC07g39593 Brassica carinata HOM05D007333 ORTHO05D008874 7.7e-71 270.4 138 97.1
BolC8t50364H Brassica oleracea HOM05D007333 ORTHO05D008874 4.2e-69 264.6 135 97.0
BraA09t39992Z Brassica rapa HOM05D007333 ORTHO05D008874 5.5e-61 237.7 139 87.8
A09p45290 Brassica napus HOM05D007333 ORTHO05D008874 7.9e-60 233.8 140 87.1
Sp5g10030 Schrenkiella parvula HOM05D007333 ORTHO05D008874 8.8e-43 177.2 131 67.9
AT3G52230 Arabidopsis thaliana HOM05D007333 ORTHO05D008874 2.5e-37 159.1 125 68.0
Carub.0005s1859 Capsella rubella HOM05D007333 ORTHO05D008874 2.5e-37 159.1 137 62.8
AL5G32820 Arabidopsis lyrata HOM05D007333 ORTHO05D008874 2.3e-35 152.5 130 61.5
CARHR162000 Cardamine hirsuta HOM05D007333 ORTHO05D008874 2.2e-33 146.0 119 62.2
Thhalv10010807m.g Eutrema salsugineum HOM05D007333 ORTHO05D008874 9.1e-32 140.6 117 69.2
Aa31LG10G7320 Aethionema arabicum HOM05D007333 ORTHO05D008874 2.6e-26 122.5 118 55.1
A04p07130 Brassica napus HOM05D007333 ORTHO05D008874 8.6e-22 107.5 67 74.6
THA.LOC104823559 Tarenaya hassleriana HOM05D007333 ORTHO05D008874 7.3e-21 104.4 139 46.8
Cpa.g.sc128.62 Carica papaya HOM05D007333 ORTHO05D008874 2.0e-18 96.3 118 48.3
PGR044G2090 Punica granatum HOM05D007333 ORTHO05D008874 1.4e-16 90.1 137 42.3
BcaC02g09270 Brassica carinata HOM05D007333 ORTHO05D008874 2.7e-15 85.9 81 59.3
Ciclev10032982m.g Citrus clementina HOM05D007333 ORTHO05D008874 4.6e-15 85.1 130 42.3
Gohir.D05G290801 Gossypium hirsutum HOM05D007333 ORTHO05D008874 1.3e-14 83.6 138 39.9
Gorai.009G305900 Gossypium raimondii HOM05D007333 ORTHO05D008874 1.3e-14 83.6 138 39.9
C04p40720 Brassica napus HOM05D012099 ORTHO05D008874 1.7e-14 83.2 79 59.5
Eucgr.J01027 Eucalyptus grandis HOM05D007333 ORTHO05D008874 1.7e-14 83.2 73 54.8
Manes.07G092300 Manihot esculenta HOM05D007333 ORTHO05D008874 3.0e-14 82.4 123 41.5
Thecc.10G097500 Theobroma cacao HOM05D007333 ORTHO05D008874 3.3e-13 79.0 118 40.7
Gohir.A05G289401 Gossypium hirsutum HOM05D007333 ORTHO05D008874 4.3e-13 78.6 138 39.1
Lj5g0012880 Lotus japonicus HOM05D007333 ORTHO05D008874 5.6e-13 78.2 141 39.0
Atru.chr12.950 Acer truncatum HOM05D007333 ORTHO05D008874 2.8e-12 75.9 130 40.0
Manes.10G054600 Manihot esculenta HOM05D007333 ORTHO05D008874 2.8e-12 75.9 137 39.4
COL.COLO4_34172 Corchorus olitorius HOM05D007333 ORTHO05D008874 6.2e-12 74.7 106 40.6
Oeu015044.1 Olea europaea HOM05D007333 ORTHO05D008874 8.1e-12 74.3 146 34.9
SalBow6G6510 Salvia bowleyana HOM05D007333 ORTHO05D008874 8.1e-12 74.3 125 40.0
Potri.010G233400 Populus trichocarpa HOM05D007333 ORTHO05D008874 1.1e-11 73.9 126 38.1
DCAR_019045 Daucus carota HOM05D007333 ORTHO05D008874 1.8e-11 73.2 113 42.5
Prupe.2G091100 Prunus persica HOM05D007333 ORTHO05D008874 5.2e-11 71.6 129 38.0
HanXRQChr14g0456271 Helianthus annuus HOM05D007333 ORTHO05D008874 1.2e-10 70.5 57 54.4
Oeu030485.1 Olea europaea HOM05D007333 ORTHO05D008874 1.2e-10 70.5 138 35.5
ClCG08G008020 Citrullus lanatus HOM05D007333 ORTHO05D008874 1.5e-10 70.1 134 35.8
Duzib114G0443 Durio zibethinus HOM05D007333 ORTHO05D008874 1.5e-10 70.1 135 37.0
TWI38G1382 Tripterygium wilfordii HOM05D007333 ORTHO05D008874 2.6e-10 69.3 83 47.0
TWI63G0473 Tripterygium wilfordii HOM05D007333 ORTHO05D008874 2.6e-10 69.3 119 37.8
Dinv20855 Davidia involucrata HOM05D007333 ORTHO05D008874 3.4e-10 68.9 147 36.1
CiPaw.14G027900 Carya illinoinensis HOM05D007333 ORTHO05D008874 4.4e-10 68.6 137 38.0
Ah.06g184540 Amaranthus hybridus HOM05D007333 ORTHO05D008874 5.8e-10 68.2 118 35.6
Dinv31280 Davidia involucrata HOM05D007333 ORTHO05D008874 5.8e-10 68.2 147 40.8
CANSAT56G1926 Cannabis sativa HOM05D007333 ORTHO05D008874 7.5e-10 67.8 104 39.4
arahy.Tifrunner.gnm1.ann1.YB4FNL Arachis hypogaea HOM05D007333 ORTHO05D008874 9.8e-10 67.4 122 36.1
CsaV3_2G032900 Cucumis sativus L. HOM05D007333 ORTHO05D008874 9.8e-10 67.4 107 37.4
FAN01G0324 Fragaria x ananassa HOM05D007333 ORTHO05D008874 9.8e-10 67.4 111 36.0
VMungo0720G1448 Vigna mungo HOM05D007333 ORTHO05D008874 9.8e-10 67.4 144 34.0
arahy.Tifrunner.gnm1.ann1.N9I1MN Arachis hypogaea HOM05D007333 ORTHO05D008874 1.3e-09 67.0 122 36.9
MSTRG.408 Avicennia marina HOM05D007333 ORTHO05D008874 1.3e-09 67.0 147 34.7
Cc02_g10320 Coffea canephora HOM05D007333 ORTHO05D008874 1.3e-09 67.0 129 34.1
MELO3C019874.2 Cucumis melo HOM05D007333 ORTHO05D008874 1.3e-09 67.0 107 37.4
ECA238G3189 Erigeron canadensis HOM05D007333 ORTHO05D008874 1.7e-09 66.6 81 45.7
FAN03G1611 Fragaria x ananassa HOM05D007333 ORTHO05D008874 2.2e-09 66.2 131 34.4
FAN06G2923 Fragaria x ananassa HOM05D007333 ORTHO05D008874 2.2e-09 66.2 131 34.4
Sed0000251 Sechium edule HOM05D007333 ORTHO05D008874 2.2e-09 66.2 81 46.9
PGSC0003DMG402027350 Solanum tuberosum HOM05D007333 ORTHO05D008874 2.2e-09 66.2 130 33.8
GSVIVG01034686001 Vitis vinifera HOM05D007333 ORTHO05D008874 2.2e-09 66.2 118 41.5
RcHm_v2.0_Chr1g0334731 Rosa chinensis HOM05D007333 ORTHO05D008874 2.9e-09 65.9 109 41.3
Sabra10G0181000 Salix brachista HOM05D007333 ORTHO05D008874 2.9e-09 65.9 154 32.5
FAN10G2394 Fragaria x ananassa HOM05D007333 ORTHO05D008874 3.7e-09 65.5 131 34.4
MBI17_g20230_MAGBIO Magnolia biondii HOM05D007333 ORTHO05D008874 3.7e-09 65.5 80 46.2
Migut.F01662 Erythranthe guttata HOM05D007333 ORTHO05D008874 4.9e-09 65.1 140 38.6
Duzib128G0626 Durio zibethinus HOM05D007333 ORTHO05D008874 6.4e-09 64.7 128 35.2
HanXRQChr08g0218141 Helianthus annuus HOM05D007333 ORTHO05D008874 6.4e-09 64.7 116 35.3
Lalb_Chr21g0313181 Lupinus albus HOM05D007333 ORTHO05D008874 6.4e-09 64.7 65 47.7
Ca_10485_v3 Cicer arietinum L. HOM05D007333 ORTHO05D008874 8.3e-09 64.3 135 35.6
Solyc11g007680.2 Solanum lycopersicum HOM05D007333 ORTHO05D008874 8.3e-09 64.3 126 34.9
Hma1.2p1_0567F.1_g180010 Hydrangea macrophylla HOM05D007333 ORTHO05D008874 1.1e-08 63.9 69 47.8
Medtr1g492600 Medicago truncatula HOM05D007333 ORTHO05D008874 1.1e-08 63.9 73 45.2
Sopen11g003540 Solanum pennellii HOM05D007333 ORTHO05D008874 2.4e-08 62.8 143 34.3
Aqoxy2G01500 Aquilegia oxysepala HOM05D007333 ORTHO05D008874 3.2e-08 62.4 76 42.1
SEGI_06473 Sequoiadendron giganteum HOM05D007333 ORTHO05D008874 5.4e-08 61.6 69 44.9
Lsat_1_v5_gn_2_102881 Lactuca sativa HOM05D007333 ORTHO05D008874 7.1e-08 61.2 87 47.1
Nitab4.5_0000593g0040 Nicotiana tabacum HOM05D007333 ORTHO05D008874 9.2e-08 60.8 132 31.8
PSO339G5821 Papaver somniferum HOM05D007333 ORTHO05D008874 9.2e-08 60.8 80 42.5
TAR633G0429 Trochodendron aralioides HOM05D007333 ORTHO05D008874 9.2e-08 60.8 84 40.5
Lsat_1_v5_gn_8_23060 Lactuca sativa HOM05D007333 ORTHO05D008874 1.6e-07 60.1 120 33.3
Peaxi162Scf00398g00057 Petunia axillaris HOM05D007333 ORTHO05D008874 1.6e-07 60.1 130 30.8
unitig_746.g26629 Utricularia gibba HOM05D007333 ORTHO05D008874 1.6e-07 60.1 144 32.6
Nitab4.5_0003408g0030 Nicotiana tabacum HOM05D007333 ORTHO05D008874 2.7e-07 59.3 132 31.1
HPP92_009761 Vanilla planifolia HOM05D065211 ORTHO05D008874 3.5e-07 58.9 57 54.4
Lalb_Chr06g0170141 Lupinus albus HOM05D007333 ORTHO05D008874 4.6e-07 58.5 121 33.1
Medtr1g492630 Medicago truncatula HOM05D007333 ORTHO05D008874 6.0e-07 58.2 121 35.5
Psat6g175280 Pisum sativum HOM05D007333 ORTHO05D008874 1.3e-06 57.0 80 40.0
vmacro10268 Vaccinium macrocarpon HOM05D007333 ORTHO05D008874 1.3e-06 57.0 132 35.6
ECA233G0976 Erigeron canadensis HOM05D007333 ORTHO05D008874 2.3e-06 56.2 63 44.4
Nn2g13958 Nelumbo nucifera HOM05D007333 ORTHO05D008874 2.3e-06 56.2 50 54.0
SGA_v2.0_scaffold62G21322 Striga asiatica HOM05D007333 ORTHO05D008874 3.0e-06 55.8 139 34.5
TPR.G2540 Trifolium pratense HOM05D007333 ORTHO05D008874 3.0e-06 55.8 143 34.3


User provided reference genes

Program Settings