Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p27460 Brassica napus HOM05D006601 ORTHO05D008281 6.2e-108 394.4 245 100.0
BolC8t50363H Brassica oleracea HOM05D006601 ORTHO05D008281 6.2e-108 394.4 245 100.0
A09p45280 Brassica napus HOM05D006601 ORTHO05D008281 3.3e-101 372.1 245 96.3
BraA09t39991Z Brassica rapa HOM05D006601 ORTHO05D008281 3.3e-101 372.1 245 96.3
Sp5g10040 Schrenkiella parvula HOM05D006601 ORTHO05D008281 2.7e-95 352.4 194 89.7
Thhalv10010678m.g Eutrema salsugineum HOM05D006601 ORTHO05D008281 1.6e-92 343.2 192 87.5
CARHR161980 Cardamine hirsuta HOM05D006601 ORTHO05D008281 1.8e-91 339.7 192 87.5
AL5G32810 Arabidopsis lyrata HOM05D006601 ORTHO05D008281 1.3e-89 333.6 191 85.9
Carub.0005s1858 Capsella rubella HOM05D006601 ORTHO05D008281 6.5e-89 331.3 194 84.5
AT3G52220 Arabidopsis thaliana HOM05D006601 ORTHO05D008281 2.2e-84 316.2 183 85.2
BcaC07g39592 Brassica carinata HOM05D006601 ORTHO05D008281 4.5e-82 308.5 251 86.1
Aa31LG10G7330 Aethionema arabicum HOM05D006601 ORTHO05D008281 3.6e-79 298.9 229 68.6
THA.LOC104823558 Tarenaya hassleriana HOM05D006601 ORTHO05D008281 4.7e-71 271.9 188 71.8
Potri.010G240300 Populus trichocarpa HOM05D006601 ORTHO05D008281 1.8e-67 260.0 184 70.7
Thecc.10G114200 Theobroma cacao HOM05D006601 ORTHO05D008281 3.1e-67 259.2 189 65.1
Gohir.A05G287400 Gossypium hirsutum HOM05D006601 ORTHO05D008281 4.5e-66 255.4 189 67.2
Gorai.009G303600 Gossypium raimondii HOM05D006601 ORTHO05D008281 4.5e-66 255.4 190 66.3
Gohir.D05G288500 Gossypium hirsutum HOM05D006601 ORTHO05D008281 5.9e-66 255.0 189 66.7
COL.COLO4_03655 Corchorus olitorius HOM05D006601 ORTHO05D008281 1.0e-65 254.2 196 64.8
Duzib114G0052 Durio zibethinus HOM05D006601 ORTHO05D008281 1.3e-65 253.8 194 64.4
Potri.008G019100 Populus trichocarpa HOM05D006601 ORTHO05D008281 8.5e-65 251.1 183 67.2
Rhsim09G0141800 Rhododendron simsii HOM05D006601 ORTHO05D008281 1.5e-64 250.4 194 63.4
Atru.chr12.1047 Acer truncatum HOM05D006601 ORTHO05D008281 9.4e-64 247.7 186 64.5
TWI38G1517 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 4.0e-62 242.3 195 62.6
CAN.G1417.5 Capsicum annuum HOM05D006601 ORTHO05D008281 8.8e-62 241.1 186 65.1
Glyma.02G110700 Glycine max HOM05D006601 ORTHO05D008281 8.8e-62 241.1 176 67.0
Cfa010329 Carpinus fangiana HOM05D006601 ORTHO05D008281 1.5e-61 240.4 168 69.6
CiPaw.13G041000 Carya illinoinensis HOM05D006601 ORTHO05D008281 2.0e-61 240.0 167 68.3
Lj2g0012177 Lotus japonicus HOM05D006601 ORTHO05D008281 2.0e-61 240.0 190 63.2
QL04p046797 Quercus lobata HOM05D006601 ORTHO05D008281 3.4e-61 239.2 147 75.5
QL04p047245 Quercus lobata HOM05D006601 ORTHO05D008281 3.4e-61 239.2 147 75.5
Manes.10G062700 Manihot esculenta HOM05D006601 ORTHO05D008281 4.4e-61 238.8 185 64.3
Phvul.002G091600 Phaseolus vulgaris HOM05D006601 ORTHO05D008281 9.8e-61 237.7 196 60.2
HanXRQChr11g0321661 Helianthus annuus HOM05D006601 ORTHO05D008281 1.3e-60 237.3 192 60.9
Ciclev10016593m.g Citrus clementina HOM05D006601 ORTHO05D008281 1.7e-60 236.9 162 71.6
Psat2g116120 Pisum sativum HOM05D006601 ORTHO05D008281 1.7e-60 236.9 171 67.3
DCAR_006335 Daucus carota HOM05D006601 ORTHO05D008281 2.2e-60 236.5 189 65.1
Ca_04833_v3 Cicer arietinum L. HOM05D006601 ORTHO05D008281 4.8e-60 235.3 172 67.4
Cc02_g09570 Coffea canephora HOM05D006601 ORTHO05D008281 4.8e-60 235.3 143 75.5
PGSC0003DMG400023966 Solanum tuberosum HOM05D006601 ORTHO05D008281 4.8e-60 235.3 184 62.5
CSS0000414 Camellia sinensis var. sinensis HOM05D006601 ORTHO05D008281 6.3e-60 235.0 178 64.0
FvH4_2g10940 Fragaria vesca HOM05D006601 ORTHO05D008281 6.3e-60 235.0 177 63.8
FAN24G1745 Fragaria x ananassa HOM05D006601 ORTHO05D008281 6.3e-60 235.0 177 63.8
MD06G1038200 Malus domestica HOM05D006601 ORTHO05D008281 6.3e-60 235.0 180 62.8
Eucgr.J00269 Eucalyptus grandis HOM05D006601 ORTHO05D008281 8.3e-60 234.6 164 68.3
Hund22273 Selenicereus undatus HOM05D006601 ORTHO05D008281 8.3e-60 234.6 158 70.3
Dinv12840 Davidia involucrata HOM05D006601 ORTHO05D008281 1.8e-59 233.4 189 61.9
Glyma.01G052400 Glycine max HOM05D006601 ORTHO05D008281 1.8e-59 233.4 173 67.1
Lalb_Chr10g0098441 Lupinus albus HOM05D006601 ORTHO05D008281 1.8e-59 233.4 187 61.5
Nitab4.5_0009484g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 1.8e-59 233.4 189 63.0
Solyc11g006760.3 Solanum lycopersicum HOM05D006601 ORTHO05D008281 1.8e-59 233.4 183 62.3
RcHm_v2.0_Chr6g0269151 Rosa chinensis HOM05D006601 ORTHO05D008281 2.4e-59 233.0 172 65.1
Sopen11g002690 Solanum pennellii HOM05D006601 ORTHO05D008281 3.1e-59 232.6 183 62.3
GSVIVG01010682001 Vitis vinifera HOM05D006601 ORTHO05D008281 4.1e-59 232.3 187 64.2
Prupe.5G030400 Prunus persica HOM05D006601 ORTHO05D008281 7.0e-59 231.5 195 59.0
Medtr5g042160 Medicago truncatula HOM05D006601 ORTHO05D008281 9.1e-59 231.1 180 62.8
Oeu030223.2 Olea europaea HOM05D006601 ORTHO05D008281 9.1e-59 231.1 198 60.1
PGR044G2546 Punica granatum HOM05D006601 ORTHO05D008281 9.1e-59 231.1 193 60.1
ClCG08G008320 Citrullus lanatus HOM05D006601 ORTHO05D008281 1.2e-58 230.7 147 74.8
vmacro10311 Vaccinium macrocarpon HOM05D006601 ORTHO05D008281 1.6e-58 230.3 192 58.9
ECA232G0968 Erigeron canadensis HOM05D006601 ORTHO05D008281 2.7e-58 229.6 153 71.2
PSO339G2358 Papaver somniferum HOM05D006601 ORTHO05D008281 2.7e-58 229.6 150 72.0
MELO3C019900.2 Cucumis melo HOM05D006601 ORTHO05D008281 3.5e-58 229.2 155 71.6
Oeu026608.1 Olea europaea HOM05D006601 ORTHO05D008281 3.5e-58 229.2 143 74.8
Sabra10G0188100 Salix brachista HOM05D006601 ORTHO05D008281 5.9e-58 228.4 252 51.6
Peaxi162Scf00125g00234 Petunia axillaris HOM05D006601 ORTHO05D008281 1.3e-57 227.3 155 67.7
RcHm_v2.0_Chr2g0160691 Rosa chinensis HOM05D006601 ORTHO05D008281 2.3e-57 226.5 172 64.0
Sed0022988 Sechium edule HOM05D006601 ORTHO05D008281 2.3e-57 226.5 167 68.3
Lsat_1_v5_gn_0_8161 Lactuca sativa HOM05D006601 ORTHO05D008281 2.9e-57 226.1 189 59.3
CsaV3_6G004290 Cucumis sativus L. HOM05D006601 ORTHO05D008281 5.0e-57 225.3 187 62.6
TAR633G2162 Trochodendron aralioides HOM05D006601 ORTHO05D008281 8.6e-57 224.6 185 61.6
SalBow3G0796 Salvia bowleyana HOM05D006601 ORTHO05D008281 1.9e-56 223.4 193 61.1
MBI17_g13115_MAGBIO Magnolia biondii HOM05D006601 ORTHO05D008281 2.5e-56 223.0 184 60.9
SGA_v2.0_scaffold62G21313 Striga asiatica HOM05D006601 ORTHO05D008281 2.5e-56 223.0 178 64.6
arahy.Tifrunner.gnm1.ann1.VBS9AQ Arachis hypogaea HOM05D006601 ORTHO05D008281 7.2e-56 221.5 188 60.6
Os08g0558700 Oryza sativa ssp. japonica HOM05D006601 ORTHO05D008281 1.6e-55 220.3 150 73.3
TPR.G31604 Trifolium pratense HOM05D006601 ORTHO05D008281 1.6e-55 220.3 134 76.1
FAN20G1775 Fragaria x ananassa HOM05D006601 ORTHO05D008281 1.0e-54 217.6 172 64.0
MSTRG.9054 Avicennia marina HOM05D006601 ORTHO05D008281 1.4e-54 217.2 183 60.7
AUR62041519 Chenopodium quinoa HOM05D006601 ORTHO05D008281 1.4e-54 217.2 147 70.1
HPP92_000012 Vanilla planifolia HOM05D006601 ORTHO05D008281 3.0e-54 216.1 173 64.2
unitig_899.g14469 Utricularia gibba HOM05D006601 ORTHO05D008281 4.0e-54 215.7 194 59.3
Aqoxy2G01120 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 1.5e-53 213.8 194 57.7
Migut.F00866 Erythranthe guttata HOM05D006601 ORTHO05D008281 1.5e-53 213.8 183 59.6
FAN15G0841 Fragaria x ananassa HOM05D006601 ORTHO05D008281 7.5e-53 211.5 179 59.2
Lj3A925T73 Lonicera japonica HOM05D006601 ORTHO05D008281 3.7e-52 209.1 163 63.2
Nn6g34864 Nelumbo nucifera HOM05D006601 ORTHO05D008281 6.3e-52 208.4 132 73.5
SEGI_26123 Sequoiadendron giganteum HOM05D006601 ORTHO05D008281 1.4e-51 207.2 202 54.5
TWI63G1188 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 7.0e-51 204.9 169 62.1
arahy.Tifrunner.gnm1.ann1.0XG3CD Arachis hypogaea HOM05D006601 ORTHO05D008281 4.3e-48 195.7 196 54.6
Pp3c1_22490 Physcomitrium patens HOM05D006601 ORTHO05D008281 1.6e-42 177.2 190 51.6
Mapoly0044s0087 Marchantia polymorpha HOM05D006601 ORTHO05D008281 1.3e-41 174.1 161 52.8
SMO367G0990 Selaginella moellendorffii HOM05D006601 ORTHO05D008281 1.5e-40 170.6 189 50.3
ATR0776G086 Amborella trichopoda HOM05D006601 ORTHO05D008281 4.7e-39 165.6 178 51.1
Actinidia31106 Actinidia chinensis HOM05D006601 ORTHO05D008281 5.8e-37 158.7 91 80.2
CDE04G0959 Ceratophyllum demersum HOM05D006601 ORTHO05D008281 5.8e-37 158.7 192 44.8
Sc09g0005300 Simmondsia chinensis HOM05D006601 ORTHO05D008281 1.3e-33 147.5 138 55.1
Haze_03300 Corylus avellana HOM05D006601 ORTHO05D008281 1.7e-33 147.1 124 61.3
Nitab4.5_0002586g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 5.6e-32 142.1 150 54.7
AUR62042084 Chenopodium quinoa HOM05D006601 ORTHO05D008281 1.2e-31 141.0 163 48.5
MCO05G050 Micromonas commoda HOM05D006601 ORTHO05D008281 1.4e-27 127.5 131 51.1
Cre18.g749347 Chlamydomonas reinhardtii HOM05D006601 ORTHO05D008281 1.2e-26 124.4 147 48.3
BcaC02g09271 Brassica carinata HOM05D006601 ORTHO05D008281 2.3e-25 120.2 129 58.1
BraA04t16410Z Brassica rapa HOM05D006601 ORTHO05D008281 3.3e-24 116.3 129 57.4
PSO692G0001 Papaver somniferum HOM05D006601 ORTHO05D008281 7.3e-24 115.2 130 52.3
PSO801G0555 Papaver somniferum HOM05D006601 ORTHO05D008281 7.3e-24 115.2 130 52.3
Ah.06g186680 Amaranthus hybridus HOM05D006601 ORTHO05D008281 4.1e-19 99.4 112 52.7
Cfa024623 Carpinus fangiana HOM05D006601 ORTHO05D008281 4.1e-19 99.4 108 48.1
CiPaw.14G033700 Carya illinoinensis HOM05D006601 ORTHO05D008281 2.3e-17 93.6 80 60.0
Zm00001eb039400 Zea mays HOM05D006601 ORTHO05D008281 9.6e-16 88.2 117 48.7
Aqoxy2G01116 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 1.4e-14 84.3 101 48.5
Lsat_1_v5_gn_4_8660 Lactuca sativa HOM05D006601 ORTHO05D008281 2.4e-11 73.6 55 61.8
Hma1.2p1_1491F.1_g286720 Hydrangea macrophylla HOM05D006601 ORTHO05D008281 8.7e-09 65.1 37 81.1
EL10Ac7g17292 Beta vulgaris HOM05D006601 ORTHO05D008281 1.1e-08 64.7 31 83.9
Aqoxy2G01117 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 1.6e-07 60.8 31 74.2
AagrBONN_evm.TU.Sc2ySwM_228.2727 Anthoceros agrestis HOM05D006601 ORTHO05D008281 2.4e-06 57.0 59 49.2


User provided reference genes

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