Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00441 Brassica carinata HOM05D004166 ORTHO05D004992 1.4e-31 139.0 70 100.0
BcaB01g00442 Brassica carinata HOM05D004166 ORTHO05D004992 1.4e-31 139.0 70 100.0
C08p27370 Brassica napus HOM05D004166 ORTHO05D004992 1.4e-31 139.0 70 100.0
BolC8t50354H Brassica oleracea HOM05D004166 ORTHO05D004992 3.0e-31 137.9 70 98.6
BraA09t39979Z Brassica rapa HOM05D004166 ORTHO05D004992 3.0e-31 137.9 70 98.6
BcaB01g00445 Brassica carinata HOM05D004166 ORTHO05D004992 2.2e-26 121.7 71 88.7
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 1.9e-25 118.6 70 84.3
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 2.1e-24 115.2 70 80.0
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 2.1e-24 115.2 70 81.4
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 2.1e-24 115.2 70 81.4
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 2.1e-24 115.2 70 81.4
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 2.3e-23 111.7 69 82.6
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 2.3e-23 111.7 69 81.2
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 5.1e-23 110.5 69 79.7
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 8.8e-23 109.8 70 77.1
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 1.5e-22 109.0 65 81.5
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 2.0e-22 108.6 65 80.0
C07p46800 Brassica napus HOM05D004166 ORTHO05D004992 2.0e-22 108.6 68 80.9
BolC7t45197H Brassica oleracea HOM05D004166 ORTHO05D004992 2.0e-22 108.6 68 80.9
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 5.7e-22 107.1 69 76.8
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 7.4e-22 106.7 69 75.4
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 1.3e-21 105.9 65 80.0
BcaNung06092 Brassica carinata HOM05D004166 ORTHO05D004992 6.3e-21 103.6 70 81.4
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 5.2e-15 84.0 67 58.2
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 8.8e-15 83.2 60 63.3
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 8.8e-15 83.2 60 63.3
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.5e-14 82.4 60 63.3
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 1.5e-14 82.4 60 63.3
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 2.6e-14 81.6 60 63.3
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 1.3e-13 79.3 67 52.2
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 1.7e-13 79.0 60 60.0
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 1.7e-13 79.0 59 64.4
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.7e-13 79.0 59 62.7
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 2.2e-13 78.6 67 53.7
FAN06G0104 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.7e-13 77.8 67 52.2
FAN10G3917 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.7e-13 77.8 67 52.2
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 4.8e-13 77.4 65 56.9
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 4.8e-13 77.4 67 55.2
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 4.8e-13 77.4 65 56.9
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 4.8e-13 77.4 65 55.4
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 6.3e-13 77.0 65 56.9
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 6.3e-13 77.0 65 53.8
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 6.3e-13 77.0 65 53.8
FAN03G1620 Fragaria x ananassa HOM05D004166 ORTHO05D004992 8.2e-13 76.6 67 50.7
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 8.2e-13 76.6 59 61.0
MD07G1010200 Malus domestica HOM05D004166 ORTHO05D004992 8.2e-13 76.6 68 52.9
RcHm_v2.0_Chr1g0315891 Rosa chinensis HOM05D004166 ORTHO05D004992 8.2e-13 76.6 67 52.2
Prupe.2G012500 Prunus persica HOM05D004166 ORTHO05D004992 1.1e-12 76.3 65 53.8
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 1.4e-12 75.9 65 53.8
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 1.4e-12 75.9 65 53.8
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 1.8e-12 75.5 65 53.8
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 1.8e-12 75.5 65 53.8
MD02G1312900 Malus domestica HOM05D004166 ORTHO05D004992 1.8e-12 75.5 68 52.9
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 2.4e-12 75.1 67 52.2
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 3.1e-12 74.7 67 47.8
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 3.1e-12 74.7 67 47.8
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 3.1e-12 74.7 59 59.3
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 7.0e-12 73.6 59 61.0
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.6e-11 72.4 68 51.5
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.6e-11 72.4 68 51.5
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 1.6e-11 72.4 68 50.0
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 2.0e-11 72.0 60 58.3
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 3.5e-11 71.2 68 50.0
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 3.5e-11 71.2 67 49.3
Phvul.005G020900 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 3.5e-11 71.2 60 55.0
MD17G1247100 Malus domestica HOM05D004166 ORTHO05D004992 4.5e-11 70.9 69 50.7
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 4.5e-11 70.9 59 59.3
TPR.G4007 Trifolium pratense HOM05D004166 ORTHO05D004992 5.9e-11 70.5 65 52.3
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 1.3e-10 69.3 68 51.5
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 1.3e-10 69.3 59 52.5
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.3e-10 69.3 65 49.2
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.7e-10 68.9 65 52.3
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 1.7e-10 68.9 65 52.3
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 1.7e-10 68.9 65 52.3
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 3.8e-10 67.8 65 50.8
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 5.0e-10 67.4 65 52.3
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 6.5e-10 67.0 58 58.6
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 1.1e-09 66.2 59 54.2
CiPaw.13G003800 Carya illinoinensis HOM05D004166 ORTHO05D004992 1.5e-09 65.9 57 49.1
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 1.9e-09 65.5 65 50.8
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 1.9e-09 65.5 61 52.5
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 1.9e-09 65.5 61 52.5
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 2.5e-09 65.1 68 50.0
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 2.5e-09 65.1 65 49.2
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 2.5e-09 65.1 59 52.5
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 2.5e-09 65.1 58 55.2
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 4.2e-09 64.3 65 49.2
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 5.5e-09 63.9 65 49.2
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 5.5e-09 63.9 68 45.6
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 5.5e-09 63.9 57 54.4
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 7.2e-09 63.5 67 46.3
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 7.2e-09 63.5 68 48.5
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 7.2e-09 63.5 65 49.2
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 9.4e-09 63.2 59 49.2
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 9.4e-09 63.2 64 51.6
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 9.4e-09 63.2 65 47.7
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 9.4e-09 63.2 61 54.1
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 2.1e-08 62.0 58 53.4
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 2.1e-08 62.0 65 47.7
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 2.7e-08 61.6 68 47.1
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.6e-08 61.2 63 47.6
Phvul.001G136000 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 3.6e-08 61.2 59 50.8
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 4.7e-08 60.8 58 55.2
Medtr3g028700 Medicago truncatula HOM05D004166 ORTHO05D004992 4.7e-08 60.8 59 50.8
SalBow6G5402 Salvia bowleyana HOM05D004166 ORTHO05D004992 4.7e-08 60.8 60 53.3
SalBow8G1301 Salvia bowleyana HOM05D004166 ORTHO05D004992 4.7e-08 60.8 60 53.3
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 8.0e-08 60.1 57 54.4
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 8.0e-08 60.1 59 50.8
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 1.8e-07 58.9 64 46.9
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.8e-07 58.9 70 47.1
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 1.8e-07 58.9 58 51.7
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 2.3e-07 58.5 57 50.9
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 2.3e-07 58.5 63 52.4
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 4.0e-07 57.8 67 44.8
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 4.0e-07 57.8 61 45.9
Migut.B01304 Erythranthe guttata HOM05D004166 ORTHO05D004992 6.7e-07 57.0 62 46.8
SalBow5G4904 Salvia bowleyana HOM05D004166 ORTHO05D004992 6.7e-07 57.0 60 45.0
SalBow8G3607 Salvia bowleyana HOM05D004166 ORTHO05D004992 6.7e-07 57.0 60 45.0
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 8.8e-07 56.6 67 46.3
Migut.N01590 Erythranthe guttata HOM05D004166 ORTHO05D004992 8.8e-07 56.6 65 43.1
TPR.G15223 Trifolium pratense HOM05D004166 ORTHO05D004992 8.8e-07 56.6 68 42.6
EL10Ac2g04320 Beta vulgaris HOM05D004166 ORTHO05D004992 1.2e-06 56.2 58 51.7
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 1.2e-06 56.2 62 46.8
HanXRQChr11g0338921 Helianthus annuus HOM05D004166 ORTHO05D004992 1.2e-06 56.2 67 41.8
Lalb_Chr25g0283111 Lupinus albus HOM05D004166 ORTHO05D004992 1.2e-06 56.2 58 48.3
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 2.0e-06 55.5 49 53.1
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 2.0e-06 55.5 59 49.2
Potri.006G054200 Populus trichocarpa HOM05D004166 ORTHO05D004992 2.0e-06 55.5 63 44.4
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 3.3e-06 54.7 57 50.9
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 3.3e-06 54.7 57 50.9
Glyma.03G138700 Glycine max HOM05D004166 ORTHO05D004992 3.3e-06 54.7 59 47.5
AUR62009381 Chenopodium quinoa HOM05D004166 ORTHO05D004992 4.4e-06 54.3 65 46.2
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 4.4e-06 54.3 58 46.6
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 5.7e-06 53.9 64 48.4
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 5.7e-06 53.9 64 48.4
AUR62023062 Chenopodium quinoa HOM05D004166 ORTHO05D004992 7.5e-06 53.5 66 48.5


User provided reference genes

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