Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00449 Brassica carinata HOM05D007963 ORTHO05D009967 3.6e-58 228.0 114 100.0
C08p27320 Brassica napus HOM05D007963 ORTHO05D009967 3.6e-58 228.0 114 100.0
BolC8t50349H Brassica oleracea HOM05D007963 ORTHO05D009967 5.2e-57 224.2 114 98.2
A09p45130 Brassica napus HOM05D007963 ORTHO05D009967 2.4e-54 215.3 114 93.9
BraA09t39974Z Brassica rapa HOM05D007963 ORTHO05D009967 2.4e-54 215.3 114 93.9
BcaNung06964 Brassica carinata HOM05D007963 ORTHO05D009967 1.1e-51 206.5 114 89.5
Thhalv10010836m.g Eutrema salsugineum HOM05D007963 ORTHO05D009967 4.7e-50 201.1 114 86.8
BcaNung06087 Brassica carinata HOM05D007963 ORTHO05D009967 3.5e-45 184.9 114 84.2
A04p07310 Brassica napus HOM05D007963 ORTHO05D009967 1.0e-44 183.3 114 81.6
BraA04t16426Z Brassica rapa HOM05D007963 ORTHO05D009967 1.0e-44 183.3 114 81.6
BcaC02g09285 Brassica carinata HOM05D007963 ORTHO05D009967 3.0e-44 181.8 114 80.7
CARHR161770 Cardamine hirsuta HOM05D007963 ORTHO05D009967 1.9e-43 179.1 115 78.3
BcaB02g08592 Brassica carinata HOM05D007963 ORTHO05D009967 2.0e-40 169.1 110 79.1
AL5G32620 Arabidopsis lyrata HOM05D007963 ORTHO05D009967 5.8e-40 167.5 116 75.0
AT3G52070 Arabidopsis thaliana HOM05D007963 ORTHO05D009967 6.6e-36 154.1 112 72.3
Carub.0005s1839 Capsella rubella HOM05D007963 ORTHO05D009967 7.3e-35 150.6 122 67.2
C04p40920 Brassica napus HOM05D007963 ORTHO05D009967 1.6e-34 149.4 98 79.6
Aa31LG10G7140 Aethionema arabicum HOM05D007963 ORTHO05D009967 1.3e-28 129.8 124 55.6
VMungo1127G0040 Vigna mungo HOM05D007963 ORTHO05D009967 1.9e-14 82.8 128 45.3
FvH4_5g32100 Fragaria vesca HOM05D007963 ORTHO05D009967 5.4e-14 81.3 107 48.6
Ciclev10033085m.g Citrus clementina HOM05D007963 ORTHO05D009967 1.6e-13 79.7 85 54.1
Atru.chr11.2601 Acer truncatum HOM05D007963 ORTHO05D009967 2.1e-13 79.3 126 41.3
Phvul.011G012801 Phaseolus vulgaris HOM05D007963 ORTHO05D009967 2.7e-13 79.0 62 66.1
RcHm_v2.0_Chr7g0228141 Rosa chinensis HOM05D007963 ORTHO05D009967 3.5e-13 78.6 82 48.8
Prupe.2G017200 Prunus persica HOM05D007963 ORTHO05D009967 1.3e-12 76.6 101 47.5
COL.COLO4_04871 Corchorus olitorius HOM05D007963 ORTHO05D009967 3.0e-12 75.5 96 45.8
Duzib133G0999 Durio zibethinus HOM05D007963 ORTHO05D009967 6.7e-12 74.3 101 43.6
MD02G1308200 Malus domestica HOM05D007963 ORTHO05D009967 8.7e-12 73.9 113 43.4
QL04p008099 Quercus lobata HOM05D007963 ORTHO05D009967 1.9e-11 72.8 126 40.5
QL04p008549 Quercus lobata HOM05D007963 ORTHO05D009967 1.9e-11 72.8 126 40.5
SalBow5G1437 Salvia bowleyana HOM05D007963 ORTHO05D009967 1.9e-11 72.8 115 41.7
SalBow5G4167 Salvia bowleyana HOM05D007963 ORTHO05D009967 1.9e-11 72.8 115 41.7
Sed0005364 Sechium edule HOM05D007963 ORTHO05D009967 1.9e-11 72.8 93 50.5
Glyma.12G008400 Glycine max HOM05D007963 ORTHO05D009967 2.5e-11 72.4 112 43.8
CsaV3_3G032070 Cucumis sativus L. HOM05D007963 ORTHO05D009967 3.3e-11 72.0 82 52.4
unitig_61.g26362 Utricularia gibba HOM05D007963 ORTHO05D009967 4.3e-11 71.6 89 44.9
MSTRG.20574 Avicennia marina HOM05D007963 ORTHO05D009967 7.4e-11 70.9 123 42.3
Cpa.g.sc125.16 Carica papaya HOM05D007963 ORTHO05D009967 9.6e-11 70.5 92 46.7
Lj3g0025556 Lotus japonicus HOM05D007963 ORTHO05D009967 1.3e-10 70.1 127 41.7
Lalb_Chr20g0107921 Lupinus albus HOM05D007963 ORTHO05D009967 1.3e-10 70.1 116 41.4
MELO3C023985.2 Cucumis melo HOM05D007963 ORTHO05D009967 1.6e-10 69.7 82 51.2
vmacro13678 Vaccinium macrocarpon HOM05D007963 ORTHO05D009967 1.6e-10 69.7 81 48.1
TAR369G0233 Trochodendron aralioides HOM05D007963 ORTHO05D009967 2.8e-10 68.9 79 48.1
Eucgr.J01210 Eucalyptus grandis HOM05D007963 ORTHO05D009967 3.6e-10 68.6 66 57.6
PGSC0003DMG400023738 Solanum tuberosum HOM05D007963 ORTHO05D009967 3.6e-10 68.6 93 45.2
Cfa010795 Carpinus fangiana HOM05D007963 ORTHO05D009967 4.8e-10 68.2 126 38.1
Haze_03176 Corylus avellana HOM05D007963 ORTHO05D009967 4.8e-10 68.2 126 39.7
Hma1.2p1_2160F.1_g315600 Hydrangea macrophylla HOM05D007963 ORTHO05D009967 8.1e-10 67.4 72 54.2
Sopen10g031160 Solanum pennellii HOM05D007963 ORTHO05D009967 1.1e-09 67.0 92 44.6
Rhsim07G0056600 Rhododendron simsii HOM05D007963 ORTHO05D009967 1.4e-09 66.6 118 39.0
Thecc.01G408600 Theobroma cacao HOM05D007963 ORTHO05D009967 2.4e-09 65.9 120 37.5
CiPaw.14G001400 Carya illinoinensis HOM05D007963 ORTHO05D009967 5.3e-09 64.7 105 41.9
Medtr4g039540 Medicago truncatula HOM05D007963 ORTHO05D009967 5.3e-09 64.7 72 52.8
Potri.009G059100 Populus trichocarpa HOM05D007963 ORTHO05D009967 5.3e-09 64.7 99 39.4
DCAR_003219 Daucus carota HOM05D007963 ORTHO05D009967 9.0e-09 63.9 79 49.4
TWI09G0461 Tripterygium wilfordii HOM05D007963 ORTHO05D009967 9.0e-09 63.9 70 55.7
ClCG10G012280 Citrullus lanatus HOM05D007963 ORTHO05D009967 1.2e-08 63.5 126 37.3
CiPaw.13G006800 Carya illinoinensis HOM05D007963 ORTHO05D009967 1.5e-08 63.2 106 37.7
Migut.B01286 Erythranthe guttata HOM05D007963 ORTHO05D009967 2.0e-08 62.8 90 42.2
Manes.07G007300 Manihot esculenta HOM05D007963 ORTHO05D009967 2.0e-08 62.8 103 41.7
Sed0018324 Sechium edule HOM05D007963 ORTHO05D009967 2.0e-08 62.8 101 40.6
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 2.6e-08 62.4 76 42.1
Gohir.A08G143400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 7.6e-08 60.8 57 54.4
Gorai.004G171400 Gossypium raimondii HOM05D007963 ORTHO05D009967 7.6e-08 60.8 57 54.4
Lsat_1_v5_gn_1_105740 Lactuca sativa HOM05D007963 ORTHO05D009967 7.6e-08 60.8 57 52.6
MBI04_g34432_MAGBIO Magnolia biondii HOM05D007963 ORTHO05D009967 7.6e-08 60.8 65 47.7
Sc23g0005920 Simmondsia chinensis HOM05D007963 ORTHO05D009967 7.6e-08 60.8 88 39.8
CSS0005909 Camellia sinensis var. sinensis HOM05D007963 ORTHO05D009967 9.9e-08 60.5 65 53.8
AUR62009397 Chenopodium quinoa HOM05D007963 ORTHO05D009967 9.9e-08 60.5 85 44.7
Gohir.D08G164400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 9.9e-08 60.5 52 57.7
HanXRQChr01g0016481 Helianthus annuus HOM05D007963 ORTHO05D009967 9.9e-08 60.5 105 37.1
Nn2g15279 Nelumbo nucifera HOM05D007963 ORTHO05D009967 1.3e-07 60.1 64 50.0
SGA_v2.0_scaffold4G02518 Striga asiatica HOM05D007963 ORTHO05D009967 1.3e-07 60.1 114 39.5
SEGI_13442 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 4.2e-06 55.1 54 48.1
SEGI_37070 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 4.2e-06 55.1 54 48.1
Os03g0217000 Oryza sativa ssp. japonica HOM05D007963 ORTHO05D009967 5.5e-06 54.7 53 50.9
Zm00001eb400040 Zea mays HOM05D007963 ORTHO05D009967 5.5e-06 54.7 53 50.9
Sabra09G0043500 Salix brachista HOM05D007963 ORTHO05D009967 7.1e-06 54.3 90 38.9


User provided reference genes

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