Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 1.7e-243 845.5 416 100.0
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 4.1e-168 595.1 504 65.7
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 4.1e-168 595.1 504 65.7
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 4.5e-167 591.7 507 64.3
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 3.8e-166 588.6 504 63.7
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 6.5e-166 587.8 504 64.5
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 2.5e-165 585.9 504 63.5
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 4.2e-165 585.1 529 62.6
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 1.2e-164 583.6 504 63.5
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 6.1e-164 581.3 506 63.4
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 1.2e-162 577.0 506 63.0
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 1.8e-155 553.1 505 60.8
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 5.0e-150 535.0 513 56.5
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 7.5e-146 521.2 506 55.9
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 1.4e-144 516.9 506 55.5
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 3.2e-144 515.8 505 56.0
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 3.2e-144 515.8 505 56.0
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 5.4e-144 515.0 504 56.5
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 1.7e-142 510.0 506 54.7
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 2.3e-142 509.6 504 55.8
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 5.0e-142 508.4 506 54.0
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 4.3e-141 505.4 504 54.4
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 4.3e-141 505.4 505 54.3
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 5.6e-141 505.0 504 55.6
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 7.3e-141 504.6 507 54.6
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 9.5e-141 504.2 509 53.8
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 1.6e-140 503.4 509 54.6
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.6e-140 503.4 509 54.2
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 2.1e-140 503.1 507 54.0
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 2.1e-140 503.1 509 54.2
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 2.1e-140 503.1 504 54.6
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 2.8e-140 502.7 509 54.2
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 2.8e-140 502.7 504 55.0
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 4.7e-140 501.9 504 54.4
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 1.0e-139 500.7 504 55.2
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 1.4e-139 500.4 506 55.1
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 1.8e-139 500.0 508 53.9
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 1.8e-139 500.0 505 53.9
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 4.0e-139 498.8 504 55.0
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 1.2e-138 497.3 515 54.0
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 2.0e-138 496.5 506 52.8
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 2.0e-138 496.5 507 54.2
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 2.6e-138 496.1 505 53.7
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 2.6e-138 496.1 506 53.6
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 2.6e-138 496.1 504 55.0
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 3.4e-138 495.7 505 53.1
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 3.4e-138 495.7 505 53.5
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 4.4e-138 495.4 504 53.2
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 5.8e-138 495.0 506 54.0
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 7.5e-138 494.6 509 53.6
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 1.3e-137 493.8 504 54.0
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 1.7e-137 493.4 506 52.6
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 1.7e-137 493.4 481 55.1
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 1.7e-137 493.4 508 52.2
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 1.7e-137 493.4 504 54.2
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 2.2e-137 493.0 509 53.2
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 3.7e-137 492.3 504 54.0
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 4.9e-137 491.9 505 53.7
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 6.4e-137 491.5 506 54.0
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 6.4e-137 491.5 509 53.0
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 8.3e-137 491.1 504 53.8
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 8.3e-137 491.1 504 53.8
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 8.3e-137 491.1 504 54.0
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 1.1e-136 490.7 504 54.0
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 1.1e-136 490.7 506 53.2
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 1.4e-136 490.3 505 54.1
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 1.9e-136 490.0 501 54.5
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 1.9e-136 490.0 504 53.8
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 1.9e-136 490.0 505 53.7
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 3.2e-136 489.2 506 52.6
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 7.0e-136 488.0 479 55.5
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 1.2e-135 487.3 506 53.6
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 2.0e-135 486.5 505 53.1
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 2.0e-135 486.5 506 53.4
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 2.7e-135 486.1 508 52.4
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 3.5e-135 485.7 506 56.9
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 6.0e-135 485.0 529 51.6
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 7.8e-135 484.6 505 53.1
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 7.8e-135 484.6 510 52.9
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 1.7e-134 483.4 505 53.5
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 6.6e-134 481.5 563 50.1
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 1.5e-133 480.3 512 51.6
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 7.3e-133 478.0 509 51.7
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 4.7e-132 475.3 504 52.2
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 8.1e-132 474.6 504 52.2
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 4.4e-130 468.8 531 49.9
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 9.2e-128 461.1 493 52.7
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 6.0e-127 458.4 511 50.1
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 1.3e-126 457.2 561 48.1
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 2.3e-126 456.4 512 50.2
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 8.6e-126 454.5 515 49.7
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 1.1e-125 454.1 504 51.8
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 4.7e-124 448.7 508 50.2
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 6.2e-124 448.4 506 49.0
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 3.4e-122 442.6 470 51.9
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 9.9e-122 441.0 506 49.4
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 1.3e-121 440.7 506 49.8
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 1.7e-121 440.3 476 53.4
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 1.7e-121 440.3 506 50.0
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 1.9e-120 436.8 406 57.4
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 2.4e-120 436.4 485 51.8
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 3.2e-120 436.0 507 48.9
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 5.1e-118 428.7 504 49.4
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 2.5e-117 426.4 554 45.8
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 7.3e-117 424.9 471 52.2
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 2.1e-111 406.8 376 56.6
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 1.1e-104 384.4 185 100.0
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 1.6e-103 380.6 504 45.6
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 1.7e-97 360.5 417 50.4
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 7.4e-93 345.1 513 41.7
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.2e-89 333.6 520 40.0
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.2e-87 327.8 512 39.6
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.2e-87 327.8 512 39.6
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 1.3e-86 324.3 199 82.9
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 8.7e-86 321.6 354 52.0
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 4.5e-82 309.3 515 38.4
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 3.8e-81 306.2 500 38.4
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 1.9e-80 303.9 520 39.4
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 3.8e-73 279.6 357 47.3
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 4.5e-58 229.6 245 50.6
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 2.2e-57 227.3 415 33.3
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 2.6e-53 213.8 228 52.6
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 2.0e-45 187.6 100 93.0
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 8.3e-44 182.2 249 44.2
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 2.3e-41 174.1 190 50.0
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 2.6e-37 160.6 403 30.8
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 2.2e-36 157.5 181 49.7
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 1.9e-32 144.4 298 32.6
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 1.2e-26 125.2 403 30.0
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 1.5e-21 108.2 196 38.8
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 7.5e-13 79.3 86 50.0
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 1.4e-11 75.1 43 72.1
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 1.6e-10 71.6 146 37.7


User provided reference genes

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