Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39579 Brassica carinata HOM05D005654 ORTHO05D006438 6.7e-91 337.4 181 100.0
C08p26310 Brassica napus HOM05D005654 ORTHO05D006438 6.7e-91 337.4 181 100.0
BolC8t50249H Brassica oleracea HOM05D005654 ORTHO05D006438 1.9e-90 335.9 181 99.4
BraA09t39870Z Brassica rapa HOM05D005654 ORTHO05D006438 3.8e-86 321.6 181 94.5
A09p44110 Brassica napus HOM05D000363 ORTHO05D006438 1.2e-84 316.6 178 93.3
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 1.3e-81 306.6 179 91.6
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 1.3e-81 306.6 179 91.6
BcaC06g33063 Brassica carinata HOM05D005654 ORTHO05D006438 2.2e-81 305.8 182 91.2
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 6.9e-80 300.8 179 89.9
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 1.2e-79 300.1 179 89.9
BcaNung00403 Brassica carinata HOM05D005654 ORTHO05D006438 1.5e-79 299.7 185 87.0
BcaB01g00554 Brassica carinata HOM05D005654 ORTHO05D006438 1.0e-78 297.0 186 87.6
Thhalv10010748m.g Eutrema salsugineum HOM05D005654 ORTHO05D006438 3.8e-78 295.0 188 85.6
Sp5g11200 Schrenkiella parvula HOM05D005654 ORTHO05D006438 3.2e-77 292.0 188 84.6
AT3G51010 Arabidopsis thaliana HOM05D005654 ORTHO05D006438 6.7e-75 284.3 189 82.5
Carub.0005s1741 Capsella rubella HOM05D005654 ORTHO05D006438 1.7e-73 279.6 189 81.5
AL5G31430 Arabidopsis lyrata HOM05D005654 ORTHO05D006438 4.8e-73 278.1 189 81.0
Aa31LG4G19130 Aethionema arabicum HOM05D005654 ORTHO05D006438 1.6e-60 236.5 186 71.0
THA.LOC104819191 Tarenaya hassleriana HOM05D005654 ORTHO05D006438 2.6e-58 229.2 188 68.6
RcHm_v2.0_Chr6g0277811 Rosa chinensis HOM05D005654 ORTHO05D006438 1.3e-49 200.3 184 64.1
Sopen04g003980 Solanum pennellii HOM05D005654 ORTHO05D006438 6.3e-49 198.0 181 65.2
Thecc.01G026300 Theobroma cacao HOM05D005654 ORTHO05D006438 6.3e-49 198.0 186 62.9
QL08p063081 Quercus lobata HOM05D005654 ORTHO05D006438 1.8e-48 196.4 187 62.6
ClCG09G019610 Citrullus lanatus HOM05D005654 ORTHO05D006438 3.1e-48 195.7 183 62.8
COL.COLO4_21992 Corchorus olitorius HOM05D005654 ORTHO05D006438 3.1e-48 195.7 188 62.8
FAN07G1349 Fragaria x ananassa HOM05D005654 ORTHO05D006438 4.1e-48 195.3 184 62.5
Hma1.2p1_1114F.1_g258780 Hydrangea macrophylla HOM05D005654 ORTHO05D006438 5.4e-48 194.9 186 60.8
Sabra07G0015400 Salix brachista HOM05D005654 ORTHO05D006438 5.4e-48 194.9 187 61.5
Solyc04g008800.3 Solanum lycopersicum HOM05D005654 ORTHO05D006438 5.4e-48 194.9 181 64.1
Nitab4.5_0002707g0030 Nicotiana tabacum HOM05D005654 ORTHO05D006438 9.1e-48 194.1 188 61.7
FvH4_2g15150 Fragaria vesca HOM05D005654 ORTHO05D006438 1.6e-47 193.4 184 63.6
QL06p034798 Quercus lobata HOM05D005654 ORTHO05D006438 1.6e-47 193.4 179 63.1
QL10p007390 Quercus lobata HOM05D005654 ORTHO05D006438 1.6e-47 193.4 179 63.1
Lalb_Chr06g0172541 Lupinus albus HOM05D005654 ORTHO05D006438 2.0e-47 193.0 191 61.3
PGSC0003DMG400025306 Solanum tuberosum HOM05D005654 ORTHO05D006438 2.0e-47 193.0 181 63.5
CSS0048601 Camellia sinensis var. sinensis HOM05D005654 ORTHO05D006438 2.7e-47 192.6 184 62.0
FAN17G0825 Fragaria x ananassa HOM05D005654 ORTHO05D006438 4.5e-47 191.8 184 62.0
CiPaw.08G137200 Carya illinoinensis HOM05D005654 ORTHO05D006438 5.9e-47 191.4 182 61.5
Nitab4.5_0007445g0010 Nicotiana tabacum HOM05D005654 ORTHO05D006438 7.7e-47 191.0 186 61.3
CANSAT01G3286 Cannabis sativa HOM05D005654 ORTHO05D006438 1.0e-46 190.7 180 61.7
FAN22G0080 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.3e-46 190.3 184 61.4
Prupe.8G013400 Prunus persica HOM05D005654 ORTHO05D006438 1.3e-46 190.3 184 62.5
MD05G1010700 Malus domestica HOM05D005654 ORTHO05D006438 2.9e-46 189.1 184 64.1
Gohir.A11G179400 Gossypium hirsutum HOM05D005654 ORTHO05D006438 5.0e-46 188.3 186 59.7
TWI60G0108 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 6.6e-46 188.0 189 60.3
Haze_03832 Corylus avellana HOM05D005654 ORTHO05D006438 8.6e-46 187.6 177 61.0
Sed0005955 Sechium edule HOM05D005654 ORTHO05D006438 1.1e-45 187.2 179 60.3
CAN.G419.13 Capsicum annuum HOM05D005654 ORTHO05D006438 4.2e-45 185.3 193 58.5
MD10G1009400 Malus domestica HOM05D005654 ORTHO05D006438 4.2e-45 185.3 188 61.2
Glyma.13G002400 Glycine max HOM05D005654 ORTHO05D006438 5.5e-45 184.9 185 60.5
Lj2A460T79 Lonicera japonica HOM05D005654 ORTHO05D006438 7.2e-45 184.5 180 62.2
GSVIVG01018856001 Vitis vinifera HOM05D005654 ORTHO05D006438 7.2e-45 184.5 189 60.3
Gorai.007G199000 Gossypium raimondii HOM05D005654 ORTHO05D006438 2.1e-44 183.0 187 59.4
CsaV3_5G027780 Cucumis sativus L. HOM05D005654 ORTHO05D006438 3.6e-44 182.2 185 61.1
Migut.H02503 Erythranthe guttata HOM05D005654 ORTHO05D006438 6.1e-44 181.4 180 60.0
FvH4_4g16440 Fragaria vesca HOM05D005654 ORTHO05D006438 6.1e-44 181.4 184 59.8
FAN12G4326 Fragaria x ananassa HOM05D005654 ORTHO05D006438 6.1e-44 181.4 184 59.8
Cc07_g10180 Coffea canephora HOM05D005654 ORTHO05D006438 8.0e-44 181.0 191 58.6
Lj3g0016616 Lotus japonicus HOM05D005654 ORTHO05D006438 1.0e-43 180.6 185 59.5
Peaxi162Scf00329g00119 Petunia axillaris HOM05D005654 ORTHO05D006438 1.4e-43 180.3 183 58.5
Gohir.D11G187100 Gossypium hirsutum HOM05D005654 ORTHO05D006438 1.8e-43 179.9 187 58.8
Manes.01G140500 Manihot esculenta HOM05D005654 ORTHO05D006438 1.8e-43 179.9 191 57.6
MELO3C005244.2 Cucumis melo HOM05D005654 ORTHO05D006438 2.3e-43 179.5 185 59.5
TAR381G0206 Trochodendron aralioides HOM05D005654 ORTHO05D006438 2.3e-43 179.5 191 57.6
Eucgr.H02778 Eucalyptus grandis HOM05D005654 ORTHO05D006438 6.8e-43 177.9 186 58.6
Glyma.20G066700 Glycine max HOM05D005654 ORTHO05D006438 1.2e-42 177.2 185 59.5
Lj5g0021075 Lotus japonicus HOM05D005654 ORTHO05D006438 1.2e-42 177.2 182 58.8
Dinv33576 Davidia involucrata HOM05D005654 ORTHO05D006438 2.0e-42 176.4 179 58.1
MSTRG.23266 Avicennia marina HOM05D005654 ORTHO05D006438 3.4e-42 175.6 183 57.9
Glyma.16G220800 Glycine max HOM05D005654 ORTHO05D006438 5.7e-42 174.9 180 58.9
Nn1g05784 Nelumbo nucifera HOM05D005654 ORTHO05D006438 9.8e-42 174.1 182 56.6
Ca_14022_v3 Cicer arietinum L. HOM05D005654 ORTHO05D006438 1.3e-41 173.7 182 57.1
Manes.02G099200 Manihot esculenta HOM05D005654 ORTHO05D006438 2.2e-41 172.9 185 55.7
VMungo0331G0515 Vigna mungo HOM05D005654 ORTHO05D006438 2.8e-41 172.6 176 59.1
Phvul.010G058900 Phaseolus vulgaris HOM05D005654 ORTHO05D006438 1.4e-40 170.2 180 58.3
SalBow8G3171 Salvia bowleyana HOM05D005654 ORTHO05D006438 2.4e-40 169.5 179 58.7
Actinidia26105 Actinidia chinensis HOM05D005654 ORTHO05D006438 7.0e-40 167.9 182 57.7
PSO170G2173 Papaver somniferum HOM05D005654 ORTHO05D006438 1.2e-39 167.2 183 57.4
Medtr8g077440 Medicago truncatula HOM05D005654 ORTHO05D006438 7.8e-39 164.5 183 57.4
PGR119G1083 Punica granatum HOM05D005654 ORTHO05D006438 1.3e-38 163.7 191 56.0
Lsat_1_v5_gn_9_115780 Lactuca sativa HOM05D005654 ORTHO05D006438 8.6e-38 161.0 186 56.5
PSO528G0264 Papaver somniferum HOM05D005654 ORTHO05D006438 1.1e-37 160.6 183 56.8
Aqoxy6G01210 Aquilegia oxysepala HOM05D005654 ORTHO05D006438 1.2e-36 157.1 182 53.8
TPR.G24134 Trifolium pratense HOM05D005654 ORTHO05D006438 1.2e-36 157.1 179 55.3
PSO339G4156 Papaver somniferum HOM05D005654 ORTHO05D006438 3.6e-36 155.6 183 54.1
Oeu021744.2 Olea europaea HOM05D005654 ORTHO05D006438 1.0e-35 154.1 233 45.9
ECA248G0981 Erigeron canadensis HOM05D005654 ORTHO05D006438 1.8e-35 153.3 186 53.8
arahy.Tifrunner.gnm1.ann1.IV76VY Arachis hypogaea HOM05D005654 ORTHO05D006438 2.6e-34 149.4 206 48.5
Lj4A211T64 Lonicera japonica HOM05D005654 ORTHO05D006438 5.8e-34 148.3 195 51.8
MBI01_g45163_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 5.8e-34 148.3 196 51.0
Ciclev10003765m.g Citrus clementina HOM05D005654 ORTHO05D006438 9.8e-34 147.5 129 62.8
HanXRQChr10g0278901 Helianthus annuus HOM05D005654 ORTHO05D006438 9.8e-34 147.5 174 53.4
Sc18g0007030 Simmondsia chinensis HOM05D005654 ORTHO05D006438 1.3e-33 147.1 195 49.2
Dinv33575 Davidia involucrata HOM05D005654 ORTHO05D006438 4.9e-33 145.2 120 65.0
CARHR160580 Cardamine hirsuta HOM05D005654 ORTHO05D006438 2.4e-32 142.9 105 79.0
arahy.Tifrunner.gnm1.ann1.I9PPQ0 Arachis hypogaea HOM05D005654 ORTHO05D006438 9.2e-32 141.0 188 50.5
SGA_v2.0_scaffold9G04932 Striga asiatica HOM05D005654 ORTHO05D006438 9.2e-32 141.0 127 65.4
Oeu035320.1 Olea europaea HOM05D005654 ORTHO05D006438 2.7e-31 139.4 172 51.2
Potri.007G018300 Populus trichocarpa HOM05D005654 ORTHO05D006438 3.5e-31 139.0 133 59.4
CARHR160590 Cardamine hirsuta HOM05D005654 ORTHO05D006438 4.6e-31 138.7 93 78.5
CDE04G0601 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 3.9e-30 135.6 191 51.3
CDE12G0226 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 1.1e-29 134.0 191 50.8
HPP92_013005 Vanilla planifolia HOM05D005654 ORTHO05D006438 2.5e-29 132.9 122 59.8
Hund00373 Selenicereus undatus HOM05D005654 ORTHO05D006438 3.6e-28 129.0 197 46.2
AUR62027117 Chenopodium quinoa HOM05D005654 ORTHO05D006438 4.7e-28 128.6 192 46.4
FAN20G0529 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.4e-27 127.1 147 55.1
DCAR_025978 Daucus carota HOM05D005654 ORTHO05D006438 1.8e-27 126.7 186 50.5
AUR62012893 Chenopodium quinoa HOM05D005654 ORTHO05D006438 5.2e-27 125.2 188 46.3
Sed0001903 Sechium edule HOM05D005654 ORTHO05D006438 7.5e-26 121.3 183 45.9
Cpa.g.sc217.22 Carica papaya HOM05D005654 ORTHO05D006438 1.7e-25 120.2 162 47.5
ATR0605G129 Amborella trichopoda HOM05D005654 ORTHO05D006438 2.9e-25 119.4 182 46.2
Nn5g29728 Nelumbo nucifera HOM05D005654 ORTHO05D006438 1.9e-24 116.7 129 51.9
SGA_v2.0_scaffold280G46859 Striga asiatica HOM05D005654 ORTHO05D006438 1.9e-24 116.7 138 50.7
FAN24G1434 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.2e-24 115.9 163 47.9
Cfa006918 Carpinus fangiana HOM05D005654 ORTHO05D006438 3.5e-23 112.5 93 68.8
Psat0s439g0080 Pisum sativum HOM05D005654 ORTHO05D006438 2.5e-21 106.3 125 51.2
TWI09G1445 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 2.5e-21 106.3 89 69.7
Os05g0126200 Oryza sativa ssp. japonica HOM05D005654 ORTHO05D006438 4.3e-21 105.5 114 57.0
EL10Ac9g22080 Beta vulgaris HOM05D005654 ORTHO05D006438 9.5e-21 104.4 248 35.5
Ah.08g209860 Amaranthus hybridus HOM05D005654 ORTHO05D006438 1.6e-20 103.6 140 46.4
Psat2g190960 Pisum sativum HOM05D005654 ORTHO05D006438 1.6e-20 103.6 122 50.0
Zm00001eb265250 Zea mays HOM05D005654 ORTHO05D006438 1.1e-19 100.9 175 41.7
Rhsim08G0123600 Rhododendron simsii HOM05D005654 ORTHO05D006438 3.1e-19 99.4 190 43.7
unitig_747.g21954 Utricularia gibba HOM05D005654 ORTHO05D006438 4.6e-15 85.5 111 46.8
Zm00001eb414250 Zea mays HOM05D005654 ORTHO05D006438 8.6e-14 81.3 89 55.1
SEGI_21166 Sequoiadendron giganteum HOM05D005654 ORTHO05D006438 7.3e-13 78.2 81 51.9
FAN15G1271 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.4e-11 73.9 61 72.1
Zm00001eb355020 Zea mays HOM05D005654 ORTHO05D006438 1.8e-11 73.6 97 49.5
Lalb_Chr02g0154671 Lupinus albus HOM05D005654 ORTHO05D006438 4.0e-11 72.4 90 46.7
SHI03481 Sapria himalayana HOM05D005654 ORTHO05D006438 1.2e-10 70.9 107 43.0
Zm00001eb035810 Zea mays HOM05D005654 ORTHO05D006438 4.2e-08 62.4 75 52.0
SHI05467 Sapria himalayana HOM05D005654 ORTHO05D006438 1.2e-07 60.8 67 55.2
MBI01_g11791_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 1.6e-07 60.5 146 37.0
Zm00001eb078300 Zea mays HOM05D000349 ORTHO05D010734 3.5e-07 59.3 74 50.0
Zm00001eb309330 Zea mays HOM05D000349 ORTHO05D006438 3.5e-07 59.3 74 50.0
SHI06070 Sapria himalayana HOM05D005654 ORTHO05D006438 2.3e-06 56.6 88 43.2


User provided reference genes

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