Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 2.9e-60 235.0 114 100.0
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 2.9e-60 235.0 114 100.0
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 2.9e-60 235.0 114 100.0
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 1.2e-56 223.0 108 100.0
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 1.2e-56 223.0 108 100.0
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 2.9e-55 218.4 114 93.9
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.5e-51 206.1 116 88.8
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 4.3e-51 204.5 115 87.8
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 4.3e-51 204.5 115 87.8
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.4e-49 199.5 116 85.3
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 2.3e-49 198.7 116 81.9
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 4.0e-49 198.0 116 83.6
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.2e-48 196.4 116 83.6
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 3.5e-45 184.9 119 79.8
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 1.3e-44 183.0 143 67.8
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 3.0e-44 181.8 121 79.3
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 3.3e-43 178.3 114 80.7
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 5.6e-43 177.6 114 79.8
C01p29550 Brassica napus HOM05D003805 ORTHO05D004300 3.4e-40 168.3 101 85.1
BolC1t02898H Brassica oleracea HOM05D003805 ORTHO05D004300 3.4e-40 168.3 101 85.1
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 1.3e-39 166.4 177 54.2
BcaC09g50052 Brassica carinata HOM05D003805 ORTHO05D004300 1.3e-39 166.4 101 84.2
BcaC06g33329 Brassica carinata HOM05D003805 ORTHO05D004300 1.4e-38 162.9 134 64.2
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 2.4e-38 162.2 125 66.4
BcaC06g33330 Brassica carinata HOM05D003805 ORTHO05D004300 4.3e-35 151.4 150 60.0
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 2.9e-31 138.7 123 60.2
BcaC06g33072 Brassica carinata HOM05D003805 ORTHO05D004300 1.3e-28 129.8 117 60.7
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 3.6e-26 121.7 120 55.8
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 2.6e-24 115.5 116 56.0
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 9.9e-24 113.6 115 57.4
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.3e-23 113.2 119 51.3
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 2.4e-22 109.0 124 52.4
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 1.2e-21 106.7 136 48.5
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 3.5e-21 105.1 116 52.6
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 7.8e-21 104.0 114 49.1
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 5.1e-20 101.3 126 46.8
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 1.5e-19 99.8 131 48.1
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 1.9e-19 99.4 128 41.4
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 1.9e-19 99.4 124 45.2
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 2.5e-19 99.0 121 45.5
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 3.3e-19 98.6 115 49.6
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 4.3e-19 98.2 145 44.8
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 5.6e-19 97.8 118 51.7
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 5.6e-19 97.8 141 44.0
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 5.6e-19 97.8 141 44.0
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 5.6e-19 97.8 138 45.7
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 1.6e-18 96.3 126 43.7
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 3.6e-18 95.1 134 44.8
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 6.2e-18 94.4 138 45.7
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 6.2e-18 94.4 125 44.8
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 8.1e-18 94.0 116 50.9
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 8.1e-18 94.0 116 50.9
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 8.1e-18 94.0 116 50.9
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 8.1e-18 94.0 135 43.7
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 8.1e-18 94.0 128 46.9
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.4e-17 93.2 137 43.1
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 2.4e-17 92.4 128 42.2
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 2.4e-17 92.4 122 46.7
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 3.1e-17 92.0 128 45.3
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 3.1e-17 92.0 122 47.5
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 3.1e-17 92.0 135 40.7
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 3.1e-17 92.0 127 42.5
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 3.1e-17 92.0 138 44.2
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 4.0e-17 91.7 123 43.9
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 5.3e-17 91.3 132 43.2
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 5.3e-17 91.3 133 39.8
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 6.9e-17 90.9 136 40.4
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 6.9e-17 90.9 141 44.0
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 1.2e-16 90.1 126 42.9
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 2.0e-16 89.4 134 42.5
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 4.5e-16 88.2 120 42.5
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 5.8e-16 87.8 129 42.6
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 7.6e-16 87.4 141 38.3
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 7.6e-16 87.4 132 42.4
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 9.9e-16 87.0 129 42.6
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 1.7e-15 86.3 129 44.2
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 1.7e-15 86.3 129 42.6
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 1.7e-15 86.3 128 40.6
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 1.7e-15 86.3 128 43.8
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 2.2e-15 85.9 129 41.9
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 2.9e-15 85.5 129 43.4
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 2.9e-15 85.5 129 41.9
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 2.9e-15 85.5 133 42.9
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 2.9e-15 85.5 132 41.7
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 3.8e-15 85.1 114 44.7
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 6.4e-15 84.3 129 41.9
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 8.4e-15 84.0 129 41.9
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 8.4e-15 84.0 129 41.9
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 8.4e-15 84.0 129 41.9
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 8.4e-15 84.0 127 41.7
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 8.4e-15 84.0 131 42.0
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.1e-14 83.6 129 41.9
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 1.1e-14 83.6 128 40.6
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 1.4e-14 83.2 134 39.6
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 1.4e-14 83.2 116 45.7
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 1.4e-14 83.2 117 39.3
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 1.9e-14 82.8 129 41.1
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 1.9e-14 82.8 130 42.3
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 1.9e-14 82.8 129 41.9
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.9e-14 82.8 129 41.1
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 2.4e-14 82.4 129 40.3
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 2.4e-14 82.4 129 40.3
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 2.4e-14 82.4 128 38.3
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 3.2e-14 82.0 122 42.6
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 3.2e-14 82.0 127 40.9
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 3.2e-14 82.0 131 40.5
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 4.2e-14 81.6 129 40.3
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 4.2e-14 81.6 128 39.8
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 5.4e-14 81.3 133 38.3
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 7.1e-14 80.9 129 40.3
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 7.1e-14 80.9 124 41.1
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 7.1e-14 80.9 128 39.8
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 7.1e-14 80.9 127 41.7
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 9.3e-14 80.5 119 40.3
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 9.3e-14 80.5 129 40.3
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 9.3e-14 80.5 129 40.3
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 9.3e-14 80.5 129 40.3
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 9.3e-14 80.5 129 40.3
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 9.3e-14 80.5 129 40.3
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 1.2e-13 80.1 116 41.4
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.6e-13 79.7 127 40.9
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.6e-13 79.7 129 40.3
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.6e-13 79.7 133 38.3
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 2.1e-13 79.3 129 40.3
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 2.1e-13 79.3 128 39.1
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 2.7e-13 79.0 129 39.5
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 2.7e-13 79.0 129 39.5
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 3.5e-13 78.6 129 39.5
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 3.5e-13 78.6 131 38.2
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 4.6e-13 78.2 130 39.2
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 4.6e-13 78.2 128 39.1
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 4.6e-13 78.2 131 38.2
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 4.6e-13 78.2 131 40.5
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 7.9e-13 77.4 130 42.3
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 7.9e-13 77.4 128 39.8
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 7.9e-13 77.4 131 39.7
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 1.0e-12 77.0 129 39.5
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.0e-12 77.0 143 35.0
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.3e-12 76.6 112 44.6
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 1.8e-12 76.3 143 37.1
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 2.3e-12 75.9 102 40.2
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 3.0e-12 75.5 129 38.0
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 5.1e-12 74.7 119 41.2
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 8.7e-12 73.9 118 40.7
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.5e-11 73.2 117 38.5
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 2.5e-11 72.4 130 39.2
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 3.3e-11 72.0 130 40.0
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 3.3e-11 72.0 117 40.2
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 3.3e-11 72.0 116 38.8
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 4.3e-11 71.6 130 40.0
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 9.6e-11 70.5 126 38.1
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 1.6e-10 69.7 119 39.5
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 1.6e-10 69.7 113 38.9
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 1.6e-10 69.7 113 38.9
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 2.1e-10 69.3 111 43.2
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 2.1e-10 69.3 120 36.7
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 4.8e-10 68.2 130 36.2
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 1.4e-09 66.6 117 39.3
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 2.4e-09 65.9 113 38.9
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 3.1e-09 65.5 118 39.0
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 4.0e-09 65.1 107 40.2
PGSC0003DMG402003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 5.3e-09 64.7 98 40.8
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 9.0e-09 63.9 112 38.4
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 9.0e-09 63.9 122 32.8
TAR247G0001 Trochodendron aralioides HOM05D003805 ORTHO05D004300 2.0e-08 62.8 116 34.5
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 2.6e-08 62.4 121 38.8
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 2.6e-08 62.4 119 37.8
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 7.6e-08 60.8 58 50.0
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 7.6e-08 60.8 114 36.0
Lsat_1_v5_gn_8_64500 Lactuca sativa HOM05D003805 ORTHO05D004300 1.3e-07 60.1 73 46.6
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.7e-07 59.7 64 45.3
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 4.9e-07 58.2 122 36.9
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 6.4e-07 57.8 125 32.8
Lalb_Chr05g0212681 Lupinus albus HOM05D003805 ORTHO05D004300 8.4e-07 57.4 109 36.7
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 8.4e-07 57.4 115 34.8
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.1e-06 57.0 105 34.3
HPP92_023423 Vanilla planifolia HOM05D003805 ORTHO05D004300 1.1e-06 57.0 107 36.4
ATR0568G162 Amborella trichopoda HOM05D003805 ORTHO05D004300 9.3e-06 53.9 71 36.6
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 9.3e-06 53.9 115 36.5


User provided reference genes

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