Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 0.0e+00 3356.6 1876 100.0
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 0.0e+00 3356.6 1876 100.0
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 0.0e+00 3327.0 1931 97.2
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 0.0e+00 3053.8 1898 92.3
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 0.0e+00 3033.4 1911 91.8
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 0.0e+00 2798.8 1961 86.7
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 0.0e+00 2142.1 2259 64.2
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 0.0e+00 2048.9 2252 62.2
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 0.0e+00 2012.3 2190 62.1
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 0.0e+00 2010.0 2193 62.3
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 0.0e+00 1937.9 2121 62.2
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 0.0e+00 1902.5 2147 59.1
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 0.0e+00 1887.1 2279 58.4
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 0.0e+00 1398.6 2274 48.7
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 1.5e-273 947.6 2442 39.0
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 3.7e-269 932.9 2432 38.8
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 1.5e-265 921.0 2466 38.5
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 8.1e-256 888.6 2441 38.1
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 5.8e-254 882.5 2435 38.2
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 2.4e-252 877.1 2434 38.0
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 1.2e-251 874.8 2449 37.9
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 7.1e-244 849.0 2393 37.0
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 7.1e-244 849.0 2445 38.0
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 9.3e-244 848.6 2455 37.6
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 6.0e-243 845.9 2417 37.1
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 1.1e-241 841.6 2439 37.9
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 9.6e-241 838.6 2412 36.8
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 3.1e-239 833.6 2420 37.4
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 1.2e-238 831.6 2426 37.5
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 4.4e-238 829.7 2446 37.1
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 8.4e-237 825.5 2431 37.3
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 1.1e-236 825.1 2485 36.4
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 5.4e-236 822.8 2432 37.5
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 3.0e-234 817.0 2435 37.1
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 6.9e-231 805.8 2494 36.6
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 1.5e-230 804.7 2481 36.2
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 4.2e-228 796.6 2321 36.7
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 9.3e-228 795.4 2348 36.9
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 1.0e-226 792.0 2399 36.5
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 6.7e-226 789.3 2358 36.7
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 3.3e-225 786.9 2431 36.0
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 1.3e-221 775.0 2475 36.1
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 3.5e-219 766.9 2345 36.7
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 3.0e-218 763.8 2326 36.5
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 1.5e-217 761.5 2423 36.4
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 1.3e-216 758.4 2419 35.7
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 3.7e-216 756.9 2514 35.5
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 6.3e-216 756.1 2423 36.9
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 1.1e-215 755.4 2417 35.7
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 2.4e-215 754.2 2505 35.4
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 1.7e-213 748.0 2254 36.9
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 2.2e-213 747.7 2282 36.2
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 2.9e-213 747.3 2411 36.0
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 6.5e-213 746.1 2157 37.8
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 1.9e-212 744.6 2428 33.8
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 2.5e-212 744.2 2422 35.7
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 3.5e-211 740.3 2519 35.4
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 4.6e-211 740.0 2405 35.6
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 7.4e-209 732.6 2448 35.0
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 1.4e-207 728.4 2436 36.0
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 2.4e-207 727.6 2519 35.1
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 9.0e-207 725.7 2410 35.6
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 9.0e-207 725.7 2355 36.3
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 1.5e-206 724.9 2430 35.6
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 5.0e-205 719.9 1964 39.2
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 4.2e-204 716.8 2427 35.3
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 1.6e-203 714.9 2427 35.1
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 7.9e-203 712.6 2281 36.3
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 1.1e-201 708.8 2425 35.0
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 8.2e-200 702.6 2474 34.6
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 1.1e-199 702.2 2418 35.6
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 3.1e-199 700.7 2426 34.9
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 6.9e-199 699.5 2146 36.7
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 9.1e-199 699.1 2492 35.0
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 7.7e-198 696.0 2323 35.9
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 1.0e-197 695.7 2435 35.0
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 5.5e-196 689.9 2237 36.7
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 2.1e-195 688.0 2341 35.6
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 6.1e-195 686.4 2394 35.1
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 1.4e-194 685.3 2175 34.9
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 1.4e-194 685.3 2362 33.9
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 8.8e-194 682.6 2331 35.6
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 8.8e-194 682.6 2339 36.7
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 5.3e-191 673.3 2395 35.0
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 1.0e-189 669.1 2446 33.6
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 6.5e-189 666.4 2341 36.0
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 8.5e-189 666.0 2414 34.3
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 3.2e-188 664.1 2349 35.2
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 3.0e-186 657.5 2131 36.1
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 3.7e-184 650.6 2550 33.8
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 1.1e-183 649.0 2401 34.4
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 1.8e-183 648.3 2266 33.5
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 1.7e-181 641.7 2122 35.2
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 3.6e-171 607.4 2405 33.9
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 3.6e-171 607.4 2317 34.4
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 5.2e-170 603.6 2413 34.4
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 2.8e-168 597.8 2278 33.5
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 6.6e-165 586.6 2322 33.3
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 1.5e-161 575.5 2355 33.2
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 3.6e-155 554.3 2273 32.6
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 6.8e-146 523.5 2297 30.9
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 1.7e-144 518.8 2211 31.4
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 1.6e-142 512.3 1823 35.0
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 1.9e-127 462.2 2159 30.4
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 4.8e-123 447.6 1068 41.9
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 5.3e-122 444.1 1482 37.1
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 2.9e-120 438.3 950 40.2
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 2.3e-117 428.7 2475 29.6
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 5.6e-108 397.5 1257 34.4
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 4.9e-104 384.4 2274 30.0
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 2.1e-99 369.0 2233 30.3
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 8.5e-96 357.1 1016 39.7
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 2.5e-92 345.5 1307 32.1
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.3e-83 316.6 647 43.0
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 5.2e-77 294.7 2371 27.2
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 4.4e-76 291.6 1503 29.1
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.6e-70 273.1 1779 30.6
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 8.0e-70 270.8 539 42.5
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 1.4e-69 270.0 435 46.4
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 7.5e-60 237.7 710 35.1
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.3e-59 236.9 2315 26.9
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 2.3e-56 226.1 966 32.7
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 2.3e-53 216.1 888 35.2
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 3.7e-51 208.8 427 41.2
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 1.5e-47 196.8 1528 29.2
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 6.4e-43 181.4 821 31.3
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 4.1e-42 178.7 1933 26.5
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 1.3e-40 173.7 268 47.0
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 2.1e-38 166.4 397 35.0
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 5.8e-36 158.3 318 40.3
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 9.8e-36 157.5 596 33.1
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 1.9e-34 153.3 696 30.2
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 2.3e-29 136.3 741 28.3
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 5.8e-28 131.7 1327 28.4
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 4.6e-25 122.1 861 30.3
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 3.6e-22 112.5 172 45.3
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 3.1e-21 109.4 172 44.8
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 2.0e-20 106.7 496 27.8
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 2.2e-19 103.2 916 26.9
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 8.7e-16 91.3 1210 24.1
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 2.8e-14 86.3 75 62.7
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 5.2e-13 82.0 1259 23.4
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 3.8e-11 75.9 591 27.4
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 1.4e-10 73.9 328 28.4
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 6.6e-08 65.1 650 26.3
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 5.6e-07 62.0 159 34.6
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 4.8e-06 58.9 300 28.7


User provided reference genes

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