Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p24920 Brassica napus HOM05D006223 ORTHO05D009080 5.8e-74 280.8 141 100.0
BolC8t50110H Brassica oleracea HOM05D006223 ORTHO05D009080 3.3e-61 238.4 126 95.2
Sp5g12220 Schrenkiella parvula HOM05D006223 ORTHO05D009080 4.6e-39 164.9 158 60.8
AT3G49890 Arabidopsis thaliana HOM05D006223 ORTHO05D009080 1.9e-37 159.5 159 56.0
Thhalv10010709m.g Eutrema salsugineum HOM05D006223 ORTHO05D009080 2.5e-37 159.1 158 58.2
AL5G29900 Arabidopsis lyrata HOM05D006223 ORTHO05D009080 5.7e-37 157.9 159 56.6
Carub.0005s1625 Capsella rubella HOM05D006223 ORTHO05D009080 8.2e-36 154.1 160 53.1
CARHR158970 Cardamine hirsuta HOM05D006223 ORTHO05D009080 1.2e-34 150.2 160 55.0
A03p47580 Brassica napus HOM05D006223 ORTHO05D009080 7.6e-34 147.5 100 78.0
BraA03t13871Z Brassica rapa HOM05D006223 ORTHO05D009080 7.6e-34 147.5 101 77.2
C07p45560 Brassica napus HOM05D006223 ORTHO05D009080 8.5e-33 144.1 100 76.0
BolC7t45077H Brassica oleracea HOM05D006223 ORTHO05D009080 8.5e-33 144.1 100 76.0
Aa31LG4G18340 Aethionema arabicum HOM05D006223 ORTHO05D009080 3.1e-27 125.6 156 51.9
THA.LOC104827599 Tarenaya hassleriana HOM05D006223 ORTHO05D009080 7.7e-26 120.9 154 46.8
Glyma.17G160900 Glycine max HOM05D006223 ORTHO05D009080 9.7e-21 104.0 161 37.9
BcaB05g23172 Brassica carinata HOM05D006223 ORTHO05D009080 1.8e-19 99.8 83 65.1
VMungo0251G3324 Vigna mungo HOM05D006223 ORTHO05D009080 1.2e-18 97.1 159 35.8
Duzib147G0613 Durio zibethinus HOM05D006223 ORTHO05D009080 1.5e-18 96.7 98 46.9
Gohir.D11G208400 Gossypium hirsutum HOM05D006223 ORTHO05D009080 2.6e-18 95.9 99 48.5
Gorai.007G223400 Gossypium raimondii HOM05D006223 ORTHO05D009080 2.6e-18 95.9 99 48.5
Gohir.A11G215000 Gossypium hirsutum HOM05D006223 ORTHO05D009080 5.9e-18 94.7 99 49.5
TPR.G24252 Trifolium pratense HOM05D006223 ORTHO05D009080 5.9e-18 94.7 99 44.4
Cpa.g.sc6.19 Carica papaya HOM05D006223 ORTHO05D009080 7.7e-18 94.4 172 35.5
TWI09G0585 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 1.0e-17 94.0 169 36.7
TWI73G0604 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 1.0e-17 94.0 160 38.8
Phvul.003G235100 Phaseolus vulgaris HOM05D006223 ORTHO05D009080 2.2e-17 92.8 159 35.8
Glyma.05G105500 Glycine max HOM05D006223 ORTHO05D009080 6.5e-17 91.3 163 35.0
Thecc.01G072400 Theobroma cacao HOM05D006223 ORTHO05D009080 6.5e-17 91.3 99 46.5
Haze_15285 Corylus avellana HOM05D006223 ORTHO05D009080 1.1e-16 90.5 99 42.4
Medtr4g097030 Medicago truncatula HOM05D006223 ORTHO05D009080 1.4e-16 90.1 165 33.3
Sabra01G0139200 Salix brachista HOM05D006223 ORTHO05D009080 1.4e-16 90.1 162 35.2
Ca_22107_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 1.9e-16 89.7 106 39.6
Ca_22114_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 1.9e-16 89.7 106 39.6
Cfa004130 Carpinus fangiana HOM05D006223 ORTHO05D009080 2.5e-16 89.4 99 42.4
GSVIVG01000109001 Vitis vinifera HOM05D006223 ORTHO05D009080 3.2e-16 89.0 164 36.0
arahy.Tifrunner.gnm1.ann1.BP3FRD Arachis hypogaea HOM05D006223 ORTHO05D009080 7.2e-16 87.8 158 38.0
PGR004G2352 Punica granatum HOM05D006223 ORTHO05D009080 7.2e-16 87.8 100 46.0
GSVIVG01000118001 Vitis vinifera HOM05D006223 ORTHO05D009080 9.4e-16 87.4 99 43.4
CSS0009729 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 1.2e-15 87.0 158 31.0
Peaxi162Scf00548g00643 Petunia axillaris HOM05D006223 ORTHO05D009080 1.6e-15 86.7 145 38.6
AUR62004007 Chenopodium quinoa HOM05D006223 ORTHO05D009080 2.1e-15 86.3 101 43.6
FAN26G2055 Fragaria x ananassa HOM05D006223 ORTHO05D009080 2.1e-15 86.3 109 43.1
Atru.chr3.1008 Acer truncatum HOM05D006223 ORTHO05D009080 2.7e-15 85.9 106 40.6
Eucgr.I00706 Eucalyptus grandis HOM05D006223 ORTHO05D009080 2.7e-15 85.9 122 36.9
Nitab4.5_0000142g0070 Nicotiana tabacum HOM05D006223 ORTHO05D009080 2.7e-15 85.9 161 34.2
Potri.001G172500 Populus trichocarpa HOM05D006223 ORTHO05D009080 2.7e-15 85.9 97 43.3
Sed0023944 Sechium edule HOM05D006223 ORTHO05D009080 3.6e-15 85.5 168 33.3
ClCG02G012630 Citrullus lanatus HOM05D003401 ORTHO05D003906 6.1e-15 84.7 169 33.1
Dinv04050 Davidia involucrata HOM05D006223 ORTHO05D009080 6.1e-15 84.7 99 38.4
FAN28G1261 Fragaria x ananassa HOM05D006223 ORTHO05D009080 6.1e-15 84.7 160 34.4
Nitab4.5_0002119g0100 Nicotiana tabacum HOM05D006223 ORTHO05D009080 7.9e-15 84.3 98 42.9
AUR62040240 Chenopodium quinoa HOM05D006223 ORTHO05D009080 2.3e-14 82.8 101 42.6
Psat4g081960 Pisum sativum HOM05D006223 ORTHO05D009080 2.3e-14 82.8 99 39.4
Nn5g30588 Nelumbo nucifera HOM05D006223 ORTHO05D009080 3.0e-14 82.4 97 40.2
FvH4_1g17670 Fragaria vesca HOM05D006223 ORTHO05D009080 3.9e-14 82.0 102 44.1
RcHm_v2.0_Chr2g0108001 Rosa chinensis HOM05D006223 ORTHO05D009080 3.9e-14 82.0 98 39.8
PGSC0003DMG400021418 Solanum tuberosum HOM05D006223 ORTHO05D009080 3.9e-14 82.0 100 46.0
CAN.G1075.35 Capsicum annuum HOM05D006223 ORTHO05D009080 5.2e-14 81.6 166 34.9
Lj7A96T45 Lonicera japonica HOM05D006223 ORTHO05D009080 6.7e-14 81.3 169 29.6
MD15G1297100 Malus domestica HOM05D006223 ORTHO05D009080 6.7e-14 81.3 109 38.5
Manes.12G113900 Manihot esculenta HOM05D006223 ORTHO05D009080 6.7e-14 81.3 165 31.5
Actinidia11984 Actinidia chinensis HOM05D006223 ORTHO05D009080 8.8e-14 80.9 99 40.4
FAN19G0818 Fragaria x ananassa HOM05D006223 ORTHO05D009080 8.8e-14 80.9 101 43.6
Prupe.6G221000 Prunus persica HOM05D006223 ORTHO05D009080 8.8e-14 80.9 101 41.6
Cc06_g22830 Coffea canephora HOM05D006223 ORTHO05D009080 1.1e-13 80.5 101 37.6
MSTRG.23673 Avicennia marina HOM05D006223 ORTHO05D009080 1.5e-13 80.1 164 31.1
Lj4g0019733 Lotus japonicus HOM05D006223 ORTHO05D009080 2.0e-13 79.7 125 36.0
Lalb_Chr05g0225861 Lupinus albus HOM05D006223 ORTHO05D009080 2.6e-13 79.3 98 38.8
Hund16399 Selenicereus undatus HOM05D006223 ORTHO05D009080 2.6e-13 79.3 171 33.3
Solyc02g092390.3 Solanum lycopersicum HOM05D006223 ORTHO05D009080 2.6e-13 79.3 100 46.0
Sopen02g036940 Solanum pennellii HOM05D006223 ORTHO05D009080 2.6e-13 79.3 99 43.4
CiPaw.01G004700 Carya illinoinensis HOM05D006223 ORTHO05D009080 4.4e-13 78.6 99 37.4
MELO3C020909.2 Cucumis melo HOM05D006223 ORTHO05D009080 4.4e-13 78.6 100 39.0
Ciclev10026365m.g Citrus clementina HOM05D006223 ORTHO05D009080 9.7e-13 77.4 99 40.4
TAR625G1165 Trochodendron aralioides HOM05D006223 ORTHO05D009080 2.8e-12 75.9 99 38.4
PSO170G6824 Papaver somniferum HOM05D006223 ORTHO05D009080 4.8e-12 75.1 124 35.5
CANSAT01G0277 Cannabis sativa HOM05D006223 ORTHO05D009080 6.3e-12 74.7 170 31.8
DCAR_025799 Daucus carota HOM05D006223 ORTHO05D009080 1.4e-11 73.6 160 30.6
HanXRQChr15g0472641 Helianthus annuus HOM05D006223 ORTHO05D009080 1.8e-11 73.2 160 29.4
arahy.Tifrunner.gnm1.ann1.83HTFG Arachis hypogaea HOM05D006223 ORTHO05D009080 2.4e-11 72.8 191 30.9
Ah.03g140550 Amaranthus hybridus HOM05D006223 ORTHO05D009080 5.3e-11 71.6 103 39.8
Lsat_1_v5_gn_3_86181 Lactuca sativa HOM05D006223 ORTHO05D009080 1.2e-10 70.5 163 30.7
Migut.H00350 Erythranthe guttata HOM05D006223 ORTHO05D009080 2.0e-10 69.7 162 29.0
Hma1.2p1_0852F.1_g228470 Hydrangea macrophylla HOM05D006223 ORTHO05D009080 2.6e-10 69.3 74 41.9
Aqoxy5G00869 Aquilegia oxysepala HOM05D006223 ORTHO05D009080 7.7e-10 67.8 97 33.0
ECA246G3554 Erigeron canadensis HOM05D006223 ORTHO05D009080 3.8e-09 65.5 160 29.4
CDE06G0771 Ceratophyllum demersum HOM05D006223 ORTHO05D009080 6.5e-09 64.7 125 31.2
SGA_v2.0_scaffold72G24074 Striga asiatica HOM05D006223 ORTHO05D009080 8.5e-09 64.3 105 32.4
Zm00001eb400790 Zea mays HOM05D006223 ORTHO05D009080 3.2e-08 62.4 104 35.6
Rhsim10G0099700 Rhododendron simsii HOM05D006223 ORTHO05D009080 4.2e-08 62.0 116 31.9
Os03g0201200 Oryza sativa ssp. japonica HOM05D006223 ORTHO05D009080 7.2e-08 61.2 107 35.5
vmacro05408 Vaccinium macrocarpon HOM05D006223 ORTHO05D009080 3.6e-07 58.9 132 29.5
HPP92_024913 Vanilla planifolia HOM05D006223 ORTHO05D009080 1.0e-06 57.4 175 30.3
ATR1153G042 Amborella trichopoda HOM05D006223 ORTHO05D009080 1.8e-06 56.6 98 33.7


User provided reference genes

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