Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p24550 Brassica napus HOM05D003381 ORTHO05D003880 7.1e-35 150.2 85 100.0
BolC8t50074H Brassica oleracea HOM05D003381 ORTHO05D003880 7.1e-35 150.2 85 100.0
A06p18160 Brassica napus HOM05D003381 ORTHO05D003880 1.5e-32 142.5 83 95.2
BcaC07g39421 Brassica carinata HOM05D003381 ORTHO05D003880 6.2e-31 137.1 83 92.8
Sp5g12530 Schrenkiella parvula HOM05D003381 ORTHO05D003880 4.5e-29 131.0 83 85.5
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 2.2e-28 128.6 83 86.7
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 2.9e-28 128.3 83 85.5
BcaB01g00694 Brassica carinata HOM05D003381 ORTHO05D003880 1.1e-27 126.3 76 92.1
AL5G29420 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 5.5e-27 124.0 83 81.9
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 9.3e-27 123.2 81 84.0
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 1.2e-26 122.9 83 81.9
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 7.9e-26 120.2 81 81.5
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 3.9e-25 117.9 81 80.2
BolC8t50073H Brassica oleracea HOM05D003381 ORTHO05D003880 4.3e-24 114.4 81 77.8
BcaC07g39418 Brassica carinata HOM05D003381 ORTHO05D003880 5.6e-24 114.0 81 79.0
A06p18190 Brassica napus HOM05D003381 ORTHO05D003880 9.6e-24 113.2 81 77.8
BraA06t24903Z Brassica rapa HOM05D003381 ORTHO05D003880 9.6e-24 113.2 81 77.8
Sp5g12540 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.6e-23 112.5 81 76.5
BcaC07g39419 Brassica carinata HOM05D003381 ORTHO05D003880 1.4e-22 109.4 80 77.5
AT5G24660 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 4.0e-22 107.8 78 73.1
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 5.3e-22 107.5 80 72.5
Sp2g22730 Schrenkiella parvula HOM05D003381 ORTHO05D003880 6.9e-22 107.1 80 71.2
BcaC03g17951 Brassica carinata HOM05D003381 ORTHO05D003880 1.2e-21 106.3 81 69.1
BolC2t12066H Brassica oleracea HOM05D003381 ORTHO05D003880 1.2e-21 106.3 81 69.1
Carub.0006s2251 Capsella rubella HOM05D003381 ORTHO05D003880 1.2e-21 106.3 76 73.7
CARHR188800 Cardamine hirsuta HOM05D003381 ORTHO05D003880 1.2e-21 106.3 80 70.0
AL6G36270 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 2.0e-21 105.5 81 70.4
CARHR158580 Cardamine hirsuta HOM05D003381 ORTHO05D003880 2.0e-21 105.5 81 74.1
C02p60110 Brassica napus HOM05D003381 ORTHO05D003880 2.6e-21 105.1 81 67.9
BraA02t08981Z Brassica rapa HOM05D003381 ORTHO05D003880 2.6e-21 105.1 81 67.9
Carub.0006s2252 Capsella rubella HOM05D003381 ORTHO05D003880 5.8e-21 104.0 78 69.2
BcaNung02004 Brassica carinata HOM05D003381 ORTHO05D003880 7.6e-21 103.6 83 67.5
A06p35480 Brassica napus HOM05D003381 ORTHO05D003880 7.6e-21 103.6 83 67.5
C07p43060 Brassica napus HOM05D003381 ORTHO05D003880 7.6e-21 103.6 83 67.5
BolC7t44833H Brassica oleracea HOM05D003381 ORTHO05D003880 7.6e-21 103.6 83 67.5
BraA06t26471Z Brassica rapa HOM05D003381 ORTHO05D003880 7.6e-21 103.6 83 67.5
AT5G24655 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.0e-20 103.2 79 69.6
Aa31LG11G3910 Aethionema arabicum HOM05D003381 ORTHO05D003880 2.2e-20 102.1 80 67.5
AL6G36260 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 2.2e-20 102.1 82 67.1
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 2.9e-20 101.7 73 74.0
BcaC09g49963 Brassica carinata HOM05D003381 ORTHO05D003880 2.7e-18 95.1 62 79.0
Aa31LG4G18060 Aethionema arabicum HOM05D003381 ORTHO05D003880 3.9e-17 91.3 80 65.0
AT3G49580 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 5.3e-14 80.9 58 79.3
A02p40150 Brassica napus HOM05D003381 ORTHO05D003880 6.9e-14 80.5 60 75.0
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 3.4e-13 78.2 82 53.7
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 3.4e-13 78.2 82 53.7
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 3.4e-13 78.2 86 53.5
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 4.5e-13 77.8 75 58.7
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 7.7e-13 77.0 79 57.0
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 7.7e-13 77.0 79 55.7
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 1.3e-12 76.3 79 55.7
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 1.3e-12 76.3 79 55.7
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 5.0e-12 74.3 84 53.6
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 5.0e-12 74.3 79 54.4
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 6.5e-12 73.9 76 56.6
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 8.5e-12 73.6 79 55.7
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 8.5e-12 73.6 86 53.5
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 1.9e-11 72.4 79 51.9
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 2.5e-11 72.0 84 53.6
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.5e-11 72.0 82 56.1
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 3.2e-11 71.6 77 51.9
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 3.2e-11 71.6 87 50.6
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 4.2e-11 71.2 77 55.8
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 4.2e-11 71.2 82 52.4
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 7.2e-11 70.5 84 52.4
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 1.2e-10 69.7 79 54.4
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 1.2e-10 69.7 79 54.4
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 1.2e-10 69.7 85 50.6
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 1.6e-10 69.3 79 50.6
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 2.1e-10 68.9 78 51.3
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 2.1e-10 68.9 79 53.2
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 2.7e-10 68.6 76 52.6
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 2.7e-10 68.6 80 50.0
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 3.6e-10 68.2 82 48.8
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 4.6e-10 67.8 82 51.2
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 4.6e-10 67.8 78 52.6
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 6.1e-10 67.4 78 51.3
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 6.1e-10 67.4 77 53.2
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 7.9e-10 67.0 82 51.2
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 7.9e-10 67.0 82 51.2
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 7.9e-10 67.0 80 52.5
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.4e-09 66.2 82 51.2
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 1.8e-09 65.9 80 48.8
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.3e-09 65.5 82 51.2
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 2.3e-09 65.5 57 59.6
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 3.0e-09 65.1 77 50.6
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 3.0e-09 65.1 51 58.8
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 3.9e-09 64.7 87 49.4
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 3.9e-09 64.7 76 55.3
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 3.9e-09 64.7 82 51.2
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 5.1e-09 64.3 73 47.9
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 5.1e-09 64.3 82 51.2
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 5.1e-09 64.3 77 53.2
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 6.7e-09 63.9 83 45.8
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 8.8e-09 63.5 78 48.7
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 8.8e-09 63.5 76 52.6
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 8.8e-09 63.5 85 47.1
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 8.8e-09 63.5 89 50.6
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 1.1e-08 63.2 87 49.4
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 1.1e-08 63.2 81 50.6
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 1.1e-08 63.2 82 45.1
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 1.5e-08 62.8 87 44.8
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.9e-08 62.4 82 48.8
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 1.9e-08 62.4 78 46.2
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 2.5e-08 62.0 73 53.4
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 2.5e-08 62.0 86 47.7
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 2.5e-08 62.0 82 47.6
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 3.3e-08 61.6 87 49.4
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 3.3e-08 61.6 53 56.6
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 3.3e-08 61.6 75 49.3
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 3.3e-08 61.6 80 46.2
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 3.3e-08 61.6 80 51.2
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 4.3e-08 61.2 83 45.8
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 4.3e-08 61.2 73 45.2
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 4.3e-08 61.2 84 50.0
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 4.3e-08 61.2 85 49.4
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 4.3e-08 61.2 66 54.5
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 4.3e-08 61.2 87 48.3
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 5.7e-08 60.8 82 46.3
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 5.7e-08 60.8 82 46.3
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 5.7e-08 60.8 76 46.1
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 5.7e-08 60.8 83 49.4
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 7.4e-08 60.5 57 54.4
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 7.4e-08 60.5 84 46.4
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 7.4e-08 60.5 84 46.4
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 7.4e-08 60.5 77 48.1
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 9.7e-08 60.1 85 43.5
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 2.2e-07 58.9 64 48.4
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 2.2e-07 58.9 79 48.1
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 2.2e-07 58.9 80 48.8
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 2.8e-07 58.5 82 47.6
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 2.8e-07 58.5 85 43.5
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 2.8e-07 58.5 85 43.5
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.8e-07 58.5 82 47.6
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 3.7e-07 58.2 74 45.9
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 3.7e-07 58.2 77 49.4
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 3.7e-07 58.2 79 50.6
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 4.8e-07 57.8 82 46.3
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 4.8e-07 57.8 73 47.9
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 8.2e-07 57.0 83 47.0
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 1.1e-06 56.6 87 44.8
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 1.4e-06 56.2 84 46.4
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 1.4e-06 56.2 74 45.9
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 1.8e-06 55.8 85 43.5
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.8e-06 55.8 77 49.4
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.8e-06 55.8 82 47.6
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 2.4e-06 55.5 87 43.7
COL.COLO4_14401 Corchorus olitorius HOM05D003381 ORTHO05D003880 2.4e-06 55.5 87 42.5
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.4e-06 55.5 82 46.3
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 2.4e-06 55.5 57 52.6
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.4e-06 55.5 89 48.3
Lsat_1_v5_gn_8_4241 Lactuca sativa HOM05D003381 ORTHO05D003880 3.1e-06 55.1 49 57.1
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 3.1e-06 55.1 75 46.7
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 4.1e-06 54.7 78 44.9
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 4.1e-06 54.7 83 47.0
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 5.3e-06 54.3 81 48.1
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 9.1e-06 53.5 85 40.0


User provided reference genes

Program Settings