Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 0.0e+00 1520.0 793 100.0
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 0.0e+00 1516.1 793 99.7
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 0.0e+00 1375.9 797 92.0
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 0.0e+00 1172.5 803 83.3
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 0.0e+00 1171.4 810 83.0
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 5.4e-278 961.1 880 67.8
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 5.9e-216 755.0 925 55.4
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 2.0e-208 729.9 933 53.2
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 2.2e-207 726.5 952 54.1
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 4.4e-203 712.2 945 51.5
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 2.8e-202 709.5 934 54.1
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 2.8e-202 709.5 934 54.1
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 2.2e-199 699.9 961 50.4
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 6.6e-191 671.8 971 48.9
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 1.5e-190 670.6 947 49.5
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 2.4e-185 653.3 924 53.0
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 5.4e-185 652.1 924 52.9
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 3.5e-184 649.4 901 49.2
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 5.0e-183 645.6 884 49.9
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 6.6e-183 645.2 932 52.4
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 4.3e-166 589.3 838 49.3
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 4.3e-166 589.3 838 49.3
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 6.4e-162 575.5 857 47.4
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 5.2e-87 326.6 848 35.3
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 2.5e-81 307.8 565 40.4
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 9.6e-25 119.8 342 30.4
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 1.6e-24 119.0 338 29.3
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 1.6e-24 119.0 338 29.3
THA.LOC104803312 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 1.6e-24 119.0 239 37.2
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 1.3e-21 109.4 211 35.1
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 4.9e-21 107.5 317 29.0
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 5.5e-20 104.0 187 35.8
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 7.1e-20 103.6 250 31.6
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 6.7e-18 97.1 336 28.3
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 1.1e-17 96.3 527 23.9
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 1.5e-17 95.9 213 32.9
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 2.5e-17 95.1 495 25.1
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 5.6e-17 94.0 239 29.7
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 5.6e-17 94.0 430 25.3
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 3.7e-16 91.3 334 27.2
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 3.7e-16 91.3 413 24.5
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 6.2e-16 90.5 320 26.6
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 6.2e-16 90.5 415 24.1
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 1.4e-15 89.4 335 26.9
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 4.0e-15 87.8 432 23.4
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 6.9e-15 87.0 359 27.0
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 6.9e-15 87.0 334 27.2
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 6.9e-15 87.0 225 32.0
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 9.0e-15 86.7 206 34.0
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 9.0e-15 86.7 328 28.7
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.2e-14 86.3 518 25.1
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 2.0e-14 85.5 240 28.3
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 5.8e-14 84.0 227 30.8
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 5.8e-14 84.0 472 26.1
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 7.6e-14 83.6 208 29.8
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 7.6e-14 83.6 429 26.3
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 7.6e-14 83.6 273 28.9
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 1.0e-13 83.2 232 29.7
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.0e-13 83.2 200 32.5
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 1.3e-13 82.8 351 26.5
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 1.7e-13 82.4 218 29.8
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 1.7e-13 82.4 497 22.5
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 2.2e-13 82.0 341 26.1
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 2.9e-13 81.6 225 28.4
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 2.9e-13 81.6 179 34.6
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 3.8e-13 81.3 226 29.6
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 4.9e-13 80.9 535 23.9
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 8.4e-13 80.1 214 29.4
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 8.4e-13 80.1 229 29.7
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 1.4e-12 79.3 523 22.8
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 1.4e-12 79.3 191 29.8
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 1.4e-12 79.3 343 24.2
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 1.9e-12 79.0 196 34.2
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 3.2e-12 78.2 198 31.3
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 3.2e-12 78.2 187 28.3
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 5.5e-12 77.4 219 29.2
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 7.1e-12 77.0 320 26.9
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 1.6e-11 75.9 186 31.2
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 1.6e-11 75.9 226 29.6
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 2.1e-11 75.5 228 31.1
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 2.1e-11 75.5 217 29.0
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 2.7e-11 75.1 251 27.1
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 2.7e-11 75.1 233 27.9
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 2.7e-11 75.1 225 28.9
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 3.5e-11 74.7 225 29.8
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 3.5e-11 74.7 183 31.7
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 4.6e-11 74.3 341 24.9
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 4.6e-11 74.3 181 30.4
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 6.0e-11 73.9 218 28.0
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 6.0e-11 73.9 184 29.9
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 7.9e-11 73.6 199 29.1
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 1.3e-10 72.8 60 58.3
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 1.3e-10 72.8 200 27.0
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 1.8e-10 72.4 200 28.0
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 1.8e-10 72.4 253 26.5
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 3.0e-10 71.6 222 29.3
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 3.0e-10 71.6 90 48.9
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 3.9e-10 71.2 241 28.6
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 3.9e-10 71.2 183 29.0
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 1.1e-09 69.7 209 29.7
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 1.1e-09 69.7 272 28.3
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 1.9e-09 68.9 165 33.3
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 4.3e-09 67.8 171 33.3
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 4.3e-09 67.8 255 31.4
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 5.7e-09 67.4 192 30.2
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 7.4e-09 67.0 166 30.7
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 7.4e-09 67.0 171 28.7
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 7.4e-09 67.0 228 29.8
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 7.4e-09 67.0 310 25.2
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 1.6e-08 65.9 206 31.6
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 4.8e-08 64.3 207 25.6
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 6.3e-08 63.9 312 23.4
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 6.3e-08 63.9 94 40.4
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 8.2e-08 63.5 370 23.0
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 8.2e-08 63.5 370 23.0
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 1.1e-07 63.2 191 27.7
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 1.4e-07 62.8 298 26.2
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 2.4e-07 62.0 85 40.0
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 5.3e-07 60.8 69 44.9
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 9.0e-07 60.1 221 26.2
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 1.2e-06 59.7 432 22.7
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 3.4e-06 58.2 201 25.4
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 3.4e-06 58.2 221 26.7
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 5.9e-06 57.4 258 24.4
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 5.9e-06 57.4 212 26.4
Eucgr.L00346 Eucalyptus grandis HOM05D013249 ORTHO05D011012 7.6e-06 57.0 167 28.1


User provided reference genes

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