Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p24230 Brassica napus HOM05D000718 ORTHO05D027315 4.1e-101 371.3 178 100.0
BolC8t50040H Brassica oleracea HOM05D000718 ORTHO05D027315 4.1e-101 371.3 178 100.0
C02p50010 Brassica napus HOM05D000718 ORTHO05D027315 3.3e-34 149.1 76 94.7
Sp3g13140 Schrenkiella parvula HOM05D000718 ORTHO05D002712 2.5e-21 106.3 252 32.1
Carub.0003s1459 Capsella rubella HOM05D000718 ORTHO05D002712 3.2e-21 105.9 252 32.9
AL3G27250 Arabidopsis lyrata HOM05D000718 ORTHO05D002712 4.2e-21 105.5 252 32.5
AT3G14930 Arabidopsis thaliana HOM05D000718 ORTHO05D002712 4.2e-21 105.5 254 32.3
BolC5t33912H Brassica oleracea HOM05D000718 ORTHO05D002712 1.6e-20 103.6 253 32.4
BcaB06g29518 Brassica carinata HOM05D000718 ORTHO05D002712 2.1e-20 103.2 252 32.5
C05p52240 Brassica napus HOM05D000718 ORTHO05D007431 2.1e-20 103.2 252 32.5
CARHR089870 Cardamine hirsuta HOM05D000718 ORTHO05D002712 2.1e-20 103.2 253 32.8
A05p34500 Brassica napus HOM05D000718 ORTHO05D007431 6.1e-20 101.7 253 32.4
BraA05t22270Z Brassica rapa HOM05D000718 ORTHO05D007431 6.1e-20 101.7 253 32.4
Thhalv10022319m.g Eutrema salsugineum HOM05D000718 ORTHO05D002712 1.0e-19 100.9 252 32.1
BcaB06g25332 Brassica carinata HOM05D000718 ORTHO05D007431 3.9e-19 99.0 47 87.2
THA.LOC104815572 Tarenaya hassleriana HOM05D000718 ORTHO05D002712 1.5e-18 97.1 251 31.5
Aa31LG8G2130 Aethionema arabicum HOM05D000718 ORTHO05D002712 2.6e-18 96.3 259 30.9
TAR636G2811 Trochodendron aralioides HOM05D000718 ORTHO05D002712 5.7e-18 95.1 176 35.2
Ca_03980_v3 Cicer arietinum L. HOM05D000718 ORTHO05D002712 2.8e-17 92.8 253 29.2
Cpa.g.sc77.4 Carica papaya HOM05D000718 ORTHO05D002712 2.4e-16 89.7 231 29.4
Migut.H01995 Erythranthe guttata HOM05D000718 ORTHO05D002712 2.4e-16 89.7 252 30.2
TPR.G13952 Trifolium pratense HOM05D000718 ORTHO05D002712 2.4e-16 89.7 253 28.9
arahy.Tifrunner.gnm1.ann1.3QD2VV Arachis hypogaea HOM05D000718 ORTHO05D002712 5.3e-16 88.6 252 28.6
BcaC06g33239 Brassica carinata HOM05D000718 ORTHO05D014279 6.9e-16 88.2 173 36.4
Eucgr.F01239 Eucalyptus grandis HOM05D000718 ORTHO05D002712 6.9e-16 88.2 252 29.0
EL10Ac4g08341 Beta vulgaris HOM05D000718 ORTHO05D002712 9.1e-16 87.8 252 29.0
Actinidia12576 Actinidia chinensis HOM05D000718 ORTHO05D002712 1.2e-15 87.4 277 28.2
arahy.Tifrunner.gnm1.ann1.S2XJM8 Arachis hypogaea HOM05D000718 ORTHO05D002712 1.2e-15 87.4 252 28.6
arahy.Tifrunner.gnm1.ann1.T5TV0P Arachis hypogaea HOM05D000718 ORTHO05D002712 1.5e-15 87.0 152 35.5
TAR629G0962 Trochodendron aralioides HOM05D000718 ORTHO05D002712 2.0e-15 86.7 288 28.1
vmacro11935 Vaccinium macrocarpon HOM05D000718 ORTHO05D002712 2.0e-15 86.7 251 29.9
VMungo1080G1900 Vigna mungo HOM05D000718 ORTHO05D002712 2.0e-15 86.7 47 70.2
arahy.Tifrunner.gnm1.ann1.M2Z725 Arachis hypogaea HOM05D000718 ORTHO05D002712 2.6e-15 86.3 47 72.3
Gorai.009G367900 Gossypium raimondii HOM05D000718 ORTHO05D002712 2.6e-15 86.3 282 27.0
Aqoxy5G04048 Aquilegia oxysepala HOM05D000718 ORTHO05D002712 3.4e-15 85.9 253 28.9
Gohir.A04G042000 Gossypium hirsutum HOM05D000718 ORTHO05D002712 3.4e-15 85.9 282 27.3
Phvul.005G065500 Phaseolus vulgaris HOM05D000718 ORTHO05D002712 4.5e-15 85.5 47 70.2
AUR62027453 Chenopodium quinoa HOM05D000718 ORTHO05D002712 5.9e-15 85.1 47 68.1
Glyma.12G229700 Glycine max HOM05D000718 ORTHO05D002712 5.9e-15 85.1 252 29.4
Lj2g0023746 Lotus japonicus HOM05D000718 ORTHO05D002712 5.9e-15 85.1 253 29.2
Lj5g0016080 Lotus japonicus HOM05D000718 ORTHO05D002712 5.9e-15 85.1 253 29.2
Medtr2g076340 Medicago truncatula HOM05D000718 ORTHO05D002712 5.9e-15 85.1 48 70.8
COL.COLO4_17553 Corchorus olitorius HOM05D000718 ORTHO05D003905 7.7e-15 84.7 252 28.2
Hma1.2p1_0290F.1_g114780 Hydrangea macrophylla HOM05D000718 ORTHO05D002712 7.7e-15 84.7 278 27.3
Lj1C830G9 Lonicera japonica HOM05D000718 ORTHO05D002712 7.7e-15 84.7 230 29.6
Sc16g0007550 Simmondsia chinensis HOM05D000718 ORTHO05D002712 7.7e-15 84.7 256 28.9
FvH4_3g18330 Fragaria vesca HOM05D000718 ORTHO05D002712 1.0e-14 84.3 252 28.6
Sed0009887 Sechium edule HOM05D000718 ORTHO05D002712 1.0e-14 84.3 229 30.6
Gohir.A01G055100 Gossypium hirsutum HOM05D000718 ORTHO05D002712 1.3e-14 84.0 223 30.0
Psat0s911g0080 Pisum sativum HOM05D000718 ORTHO05D002712 1.3e-14 84.0 48 68.8
PGR102G0111 Punica granatum HOM05D000718 ORTHO05D002712 1.3e-14 84.0 253 28.5
Atru.chr2.2151 Acer truncatum HOM05D000718 ORTHO05D002712 1.7e-14 83.6 47 68.1
Gohir.D05G341200 Gossypium hirsutum HOM05D000718 ORTHO05D002712 1.7e-14 83.6 252 27.8
Lalb_Chr25g0285891 Lupinus albus HOM05D000718 ORTHO05D002712 1.7e-14 83.6 47 68.1
MBI06_g29323_MAGBIO Magnolia biondii HOM05D000718 ORTHO05D002712 1.7e-14 83.6 47 68.1
Ciclev10021020m.g Citrus clementina HOM05D000718 ORTHO05D002712 2.9e-14 82.8 229 27.9
Nitab4.5_0000383g0140 Nicotiana tabacum HOM05D000718 ORTHO05D002712 2.9e-14 82.8 229 29.3
MSTRG.14231 Avicennia marina HOM05D000718 ORTHO05D002712 3.8e-14 82.4 252 27.8
CAN.G1119.3 Capsicum annuum HOM05D000718 ORTHO05D002712 3.8e-14 82.4 229 27.9
Peaxi162Scf00252g00416 Petunia axillaris HOM05D000718 ORTHO05D002712 3.8e-14 82.4 229 29.3
Peaxi162Scf00692g00610 Petunia axillaris HOM05D000718 ORTHO05D002712 3.8e-14 82.4 229 29.3
unitig_749.g13540 Utricularia gibba HOM05D000718 ORTHO05D002712 3.8e-14 82.4 229 29.3
Haze_09327 Corylus avellana HOM05D000718 ORTHO05D002712 5.0e-14 82.0 253 28.1
MELO3C016131.2 Cucumis melo HOM05D000718 ORTHO05D002712 5.0e-14 82.0 229 30.1
RcHm_v2.0_Chr5g0030981 Rosa chinensis HOM05D000718 ORTHO05D002712 5.0e-14 82.0 47 68.1
Cfa019567 Carpinus fangiana HOM05D000718 ORTHO05D007431 6.5e-14 81.6 253 28.1
Sopen10g003130 Solanum pennellii HOM05D000718 ORTHO05D002712 6.5e-14 81.6 229 27.9
PGSC0003DMG402021263 Solanum tuberosum HOM05D000718 ORTHO05D002712 6.5e-14 81.6 229 27.9
arahy.Tifrunner.gnm1.ann1.A9E66P Arachis hypogaea HOM05D000718 ORTHO05D002712 8.5e-14 81.3 47 68.1
CDE09G1214 Ceratophyllum demersum HOM05D000718 ORTHO05D002712 8.5e-14 81.3 47 72.3
SGA_v2.0_scaffold130G34293 Striga asiatica HOM05D000718 ORTHO05D007431 8.5e-14 81.3 253 27.7
CANSAT35G0570 Cannabis sativa HOM05D000718 ORTHO05D002712 1.1e-13 80.9 254 28.0
CsaV3_4G008050 Cucumis sativus L. HOM05D000718 ORTHO05D002712 1.1e-13 80.9 230 30.0
Dinv14992 Davidia involucrata HOM05D000718 ORTHO05D002712 1.1e-13 80.9 230 28.3
Glyma.13G269900 Glycine max HOM05D000718 ORTHO05D002712 1.1e-13 80.9 47 68.1
Manes.03G101500 Manihot esculenta HOM05D000718 ORTHO05D002712 1.1e-13 80.9 253 28.1
Solyc10g007320.3 Solanum lycopersicum HOM05D000718 ORTHO05D002712 1.1e-13 80.9 229 30.1
GSVIVG01014200001 Vitis vinifera HOM05D000718 ORTHO05D002712 1.4e-13 80.5 47 66.0
ECA236G1192 Erigeron canadensis HOM05D000718 ORTHO05D002712 1.9e-13 80.1 253 28.5
Potri.001G390800 Populus trichocarpa HOM05D000718 ORTHO05D002712 1.9e-13 80.1 47 63.8
Prupe.4G165200 Prunus persica HOM05D000718 ORTHO05D002712 1.9e-13 80.1 47 66.0
SalBow7G1873 Salvia bowleyana HOM05D000718 ORTHO05D002712 2.5e-13 79.7 254 29.1
Thecc.07G110600 Theobroma cacao HOM05D000718 ORTHO05D002712 2.5e-13 79.7 253 28.1
MD11G1263300 Malus domestica HOM05D000718 ORTHO05D002712 3.2e-13 79.3 47 66.0
QL08p000399 Quercus lobata HOM05D000718 ORTHO05D002712 4.2e-13 79.0 252 27.4
SalBow7G2456 Salvia bowleyana HOM05D000718 ORTHO05D002712 4.2e-13 79.0 47 68.1
ClCG07G010290 Citrullus lanatus HOM05D000718 ORTHO05D002712 5.5e-13 78.6 229 29.7
ATR1131G065 Amborella trichopoda HOM05D000718 ORTHO05D002712 7.2e-13 78.2 47 66.0
HanXRQChr17g0534531 Helianthus annuus HOM05D000718 ORTHO05D002712 7.2e-13 78.2 47 66.0
Rhsim06G0207600 Rhododendron simsii HOM05D000718 ORTHO05D002712 7.2e-13 78.2 272 27.6
TWI38G2127 Tripterygium wilfordii HOM05D000718 ORTHO05D002712 7.2e-13 78.2 47 63.8
Lsat_1_v5_gn_7_73881 Lactuca sativa HOM05D000718 ORTHO05D002712 9.4e-13 77.8 262 27.9
MD03G1242800 Malus domestica HOM05D000718 ORTHO05D002712 9.4e-13 77.8 47 63.8
PSO170G1468 Papaver somniferum HOM05D000718 ORTHO05D002712 9.4e-13 77.8 47 66.0
CiPaw.11G160500 Carya illinoinensis HOM05D000718 ORTHO05D003905 1.2e-12 77.4 47 63.8
CDE02G4266 Ceratophyllum demersum HOM05D000718 ORTHO05D002712 1.2e-12 77.4 45 71.1
Zm00001eb358460 Zea mays HOM05D000718 ORTHO05D002712 1.2e-12 77.4 47 61.7
Zm00001eb358470 Zea mays HOM05D000718 ORTHO05D002712 1.2e-12 77.4 47 61.7
Zm00001eb358500 Zea mays HOM05D000718 ORTHO05D002712 1.2e-12 77.4 47 61.7
Zm00001eb358510 Zea mays HOM05D000718 ORTHO05D002712 1.2e-12 77.4 47 61.7
Cc05_g11120 Coffea canephora HOM05D000718 ORTHO05D002712 1.6e-12 77.0 49 61.2
Hund10558 Selenicereus undatus HOM05D000718 ORTHO05D002712 1.6e-12 77.0 47 63.8
Ah.14g085480 Amaranthus hybridus HOM05D000718 ORTHO05D002712 2.1e-12 76.6 56 58.9
Gohir.D01G042756 Gossypium hirsutum HOM05D000718 ORTHO05D002712 2.7e-12 76.3 47 63.8
Gorai.002G060900 Gossypium raimondii HOM05D000718 ORTHO05D003905 2.7e-12 76.3 47 63.8
Os01g0622300 Oryza sativa ssp. japonica HOM05D000718 ORTHO05D002712 2.7e-12 76.3 47 61.7
HPP92_008795 Vanilla planifolia HOM05D000718 ORTHO05D002712 2.7e-12 76.3 48 60.4
Nn3g18611 Nelumbo nucifera HOM05D000718 ORTHO05D002712 3.6e-12 75.9 47 66.0
CSS0004968 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D002712 8.0e-12 74.7 230 28.3
DCAR_021024 Daucus carota HOM05D000718 ORTHO05D002712 1.0e-11 74.3 264 27.3
arahy.Tifrunner.gnm1.ann1.58I10M Arachis hypogaea HOM05D000718 ORTHO05D002712 1.4e-11 73.9 47 68.1
Duzib213G0559 Durio zibethinus HOM05D000718 ORTHO05D002712 2.3e-11 73.2 252 26.6
Pp3c18_16840 Physcomitrium patens HOM05D000718 ORTHO05D002712 5.2e-11 72.0 229 27.5
C07p45170 Brassica napus HOM05D000718 ORTHO05D014279 6.7e-11 71.6 129 41.1
SMO147G0075 Selaginella moellendorffii HOM05D000718 ORTHO05D002712 6.7e-11 71.6 47 59.6
SGA_v2.0_scaffold34G13886 Striga asiatica HOM05D000718 ORTHO05D002712 1.1e-10 70.9 47 57.4
AagrBONN_evm.TU.Sc2ySwM_228.449 Anthoceros agrestis HOM05D000718 ORTHO05D002712 9.7e-10 67.8 47 53.2
BraA01t04413Z Brassica rapa HOM05D000718 ORTHO05D014279 9.7e-10 67.8 74 52.7
CBR_g41405 Chara braunii HOM05D000718 ORTHO05D002712 9.7e-10 67.8 253 24.1
Actinidia09810 Actinidia chinensis HOM05D000718 ORTHO05D002712 1.3e-09 67.4 40 65.0
arahy.Tifrunner.gnm1.ann1.B8YC98 Arachis hypogaea HOM05D000718 ORTHO05D026560 2.8e-09 66.2 38 68.4
MCO04G531 Micromonas commoda HOM05D000718 ORTHO05D002712 3.7e-09 65.9 47 53.2
AUR62031246 Chenopodium quinoa HOM05D000718 ORTHO05D002712 2.4e-08 63.2 184 28.8
FAN11G2178 Fragaria x ananassa HOM05D000718 ORTHO05D002712 7.0e-08 61.6 302 24.5
FAN16G3513 Fragaria x ananassa HOM05D000718 ORTHO05D002712 7.0e-08 61.6 302 24.5
FAN21G1491 Fragaria x ananassa HOM05D000718 ORTHO05D002712 7.0e-08 61.6 311 23.8
BolC9t59605H Brassica oleracea HOM05D000718 ORTHO05D014279 2.0e-07 60.1 42 59.5
Cre02.g076300 Chlamydomonas reinhardtii HOM05D000718 ORTHO05D002712 2.0e-07 60.1 47 51.1
BolC7t45040H Brassica oleracea HOM05D000718 ORTHO05D014279 4.5e-07 58.9 42 54.8
Potri.011G109800 Populus trichocarpa HOM05D000718 ORTHO05D002712 1.0e-06 57.8 71 47.9
Prupe.2G261500 Prunus persica HOM05D000718 ORTHO05D002712 1.0e-06 57.8 223 25.1
arahy.Tifrunner.gnm1.ann1.EI43SS Arachis hypogaea HOM05D000718 ORTHO05D002712 1.3e-06 57.4 72 47.2
arahy.Tifrunner.gnm1.ann1.IT467D Arachis hypogaea HOM05D000718 ORTHO05D002712 1.3e-06 57.4 47 51.1
FAN25G2426 Fragaria x ananassa HOM05D000718 ORTHO05D002712 1.3e-06 57.4 96 33.3
vmacro23382 Vaccinium macrocarpon HOM05D000718 ORTHO05D002712 1.7e-06 57.0 71 47.9
Actinidia09809 Actinidia chinensis HOM05D000718 ORTHO05D002712 5.0e-06 55.5 72 45.8
Oeu061357.2 Olea europaea HOM05D000718 ORTHO05D002712 5.0e-06 55.5 72 44.4
BraA02t06747Z Brassica rapa HOM05D000718 ORTHO05D014279 8.5e-06 54.7 42 54.8


User provided reference genes

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