Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p24000 Brassica napus HOM05D006526 ORTHO05D024464 1.8e-53 212.2 98 100.0
BcaC07g39377 Brassica carinata HOM05D006526 ORTHO05D024464 7.2e-39 163.7 82 95.1
BolC8t50022H Brassica oleracea HOM05D006526 ORTHO05D024464 3.1e-34 148.3 69 95.7
CARHR075020 Cardamine hirsuta HOM05D006526 ORTHO05D008496 5.0e-24 114.4 86 75.6
BcaB05g22967 Brassica carinata HOM05D006526 ORTHO05D008496 7.2e-23 110.5 94 69.1
AT3G01920 Arabidopsis thaliana HOM05D006526 ORTHO05D008496 9.4e-23 110.2 93 68.8
BcaB05g22970 Brassica carinata HOM05D006526 ORTHO05D008496 9.4e-23 110.2 94 69.1
AL3G10210 Arabidopsis lyrata HOM05D006526 ORTHO05D008496 1.0e-21 106.7 93 66.7
A01p25030 Brassica napus HOM05D006526 ORTHO05D008496 1.4e-21 106.3 94 66.0
BraA01t02414Z Brassica rapa HOM05D006526 ORTHO05D008496 1.4e-21 106.3 94 66.0
Aa31LG5G11040 Aethionema arabicum HOM05D006526 ORTHO05D008496 2.3e-21 105.5 93 64.5
Sp3g00170 Schrenkiella parvula HOM05D006526 ORTHO05D008496 1.1e-20 103.2 94 64.9
BcaC09g49919 Brassica carinata HOM05D006526 ORTHO05D008496 4.4e-20 101.3 94 63.8
C01p31260 Brassica napus HOM05D006526 ORTHO05D008496 4.4e-20 101.3 94 63.8
BolC1t03065H Brassica oleracea HOM05D006526 ORTHO05D008496 4.4e-20 101.3 94 63.8
Thhalv10000573m.g Eutrema salsugineum HOM05D006526 ORTHO05D008496 1.3e-19 99.8 81 69.1
THA.LOC104821121 Tarenaya hassleriana HOM05D006526 ORTHO05D008496 3.7e-19 98.2 93 61.3
Atru.chr6.2570 Acer truncatum HOM05D006526 ORTHO05D008496 4.1e-18 94.7 92 55.4
COL.COLO4_13261 Corchorus olitorius HOM05D006526 ORTHO05D008496 9.1e-18 93.6 79 58.2
TWI56G1218 Tripterygium wilfordii HOM05D006526 ORTHO05D008496 9.1e-18 93.6 93 54.8
BraA06t24956Z Brassica rapa HOM05D006526 ORTHO05D024464 1.6e-17 92.8 86 59.3
Manes.15G161000 Manihot esculenta HOM05D006526 ORTHO05D008496 2.0e-17 92.4 95 56.8
Sabra16G0211400 Salix brachista HOM05D006526 ORTHO05D008496 4.5e-17 91.3 90 54.4
Thecc.04G036000 Theobroma cacao HOM05D006526 ORTHO05D008496 4.5e-17 91.3 95 54.7
PGR042G1209 Punica granatum HOM05D006526 ORTHO05D008496 5.9e-17 90.9 75 62.7
Carub.0003s0016 Capsella rubella HOM05D006526 ORTHO05D008496 1.3e-16 89.7 70 71.4
Duzib147G1379 Durio zibethinus HOM05D006526 ORTHO05D008496 1.7e-16 89.4 95 51.6
Eucgr.J02351 Eucalyptus grandis HOM05D006526 ORTHO05D008496 2.2e-16 89.0 91 51.6
Hma1.2p1_1278F.1_g272280 Hydrangea macrophylla HOM05D006526 ORTHO05D008496 3.8e-16 88.2 75 62.7
Cpa.g.sc171.15 Carica papaya HOM05D006526 ORTHO05D008496 6.5e-16 87.4 94 51.1
Ciclev10015967m.g Citrus clementina HOM05D006526 ORTHO05D008496 1.5e-15 86.3 93 53.8
Gohir.D09G036900 Gossypium hirsutum HOM05D006526 ORTHO05D008496 1.9e-15 85.9 95 50.5
Gorai.006G042000 Gossypium raimondii HOM05D006526 ORTHO05D008496 1.9e-15 85.9 95 50.5
Gohir.A09G035700 Gossypium hirsutum HOM05D006526 ORTHO05D008496 2.5e-15 85.5 95 49.5
Potri.001G330100 Populus trichocarpa HOM05D006526 ORTHO05D008496 2.5e-15 85.5 95 53.7
Dinv33336 Davidia involucrata HOM05D006526 ORTHO05D008496 3.2e-15 85.1 79 59.5
DCAR_000965 Daucus carota HOM05D006526 ORTHO05D008496 2.7e-14 82.0 75 56.0
Lju41C52G13 Lonicera japonica HOM05D002875 ORTHO05D003215 2.7e-14 82.0 83 49.4
PGSC0003DMG400020254 Solanum tuberosum HOM05D006526 ORTHO05D008496 2.7e-14 82.0 75 57.3
Actinidia05903 Actinidia chinensis HOM05D006526 ORTHO05D008496 4.7e-14 81.3 79 54.4
GSVIVG01033093001 Vitis vinifera HOM05D006526 ORTHO05D008496 4.7e-14 81.3 80 57.5
QL02p071425 Quercus lobata HOM05D006526 ORTHO05D008496 6.1e-14 80.9 96 51.0
Actinidia36203 Actinidia chinensis HOM05D006526 ORTHO05D008496 8.0e-14 80.5 82 53.7
CAN.G473.100 Capsicum annuum HOM05D006526 ORTHO05D008496 8.0e-14 80.5 81 53.1
Peaxi162Scf00420g00560 Petunia axillaris HOM05D006526 ORTHO05D008496 1.0e-13 80.1 78 53.8
Rhsim10G0006300 Rhododendron simsii HOM05D006526 ORTHO05D008496 1.0e-13 80.1 79 55.7
Oeu005097.1 Olea europaea HOM05D006526 ORTHO05D008496 1.8e-13 79.3 76 50.0
Solyc02g094150.4 Solanum lycopersicum HOM05D006526 ORTHO05D008496 3.0e-13 78.6 75 54.7
Sopen02g038780 Solanum pennellii HOM05D006526 ORTHO05D008496 3.0e-13 78.6 75 54.7
vmacro05958 Vaccinium macrocarpon HOM05D006526 ORTHO05D008496 3.0e-13 78.6 79 51.9
Aqoxy3G01551 Aquilegia oxysepala HOM05D006526 ORTHO05D008496 5.2e-13 77.8 79 54.4
Nitab4.5_0002050g0140 Nicotiana tabacum HOM05D006526 ORTHO05D008496 5.2e-13 77.8 74 55.4
Hund04346 Selenicereus undatus HOM05D006526 ORTHO05D008496 5.2e-13 77.8 79 50.6
MELO3C014888.2 Cucumis melo HOM05D006526 ORTHO05D008496 6.8e-13 77.4 84 52.4
Ah.03g147500 Amaranthus hybridus HOM05D006526 ORTHO05D008496 8.8e-13 77.0 75 53.3
AUR62003516 Chenopodium quinoa HOM05D006526 ORTHO05D008496 8.8e-13 77.0 78 51.3
AUR62017828 Chenopodium quinoa HOM05D006526 ORTHO05D008496 8.8e-13 77.0 75 49.3
CsaV3_3G027000 Cucumis sativus L. HOM05D006526 ORTHO05D008496 1.2e-12 76.6 84 51.2
Glyma.19G091200 Glycine max HOM05D006526 ORTHO05D008496 1.2e-12 76.6 92 48.9
Nn4g22325 Nelumbo nucifera HOM05D006526 ORTHO05D008496 1.2e-12 76.6 76 50.0
Cc07_g00840 Coffea canephora HOM05D006526 ORTHO05D008496 1.5e-12 76.3 76 51.3
Haze_14876 Corylus avellana HOM05D006526 ORTHO05D008496 1.5e-12 76.3 74 60.8
Glyma.16G056450 Glycine max HOM05D006526 ORTHO05D008496 1.5e-12 76.3 95 47.4
Phvul.001G093500 Phaseolus vulgaris HOM05D006526 ORTHO05D008496 2.0e-12 75.9 92 48.9
arahy.Tifrunner.gnm1.ann1.4N5YWB Arachis hypogaea HOM05D006526 ORTHO05D008496 2.6e-12 75.5 78 53.8
arahy.Tifrunner.gnm1.ann1.C96CVE Arachis hypogaea HOM05D006526 ORTHO05D008496 2.6e-12 75.5 78 53.8
Prupe.3G306300 Prunus persica HOM05D006526 ORTHO05D008496 2.6e-12 75.5 74 58.1
RcHm_v2.0_Chr2g0175561 Rosa chinensis HOM05D006526 ORTHO05D008496 2.6e-12 75.5 76 53.9
Lalb_Chr14g0363401 Lupinus albus HOM05D006526 ORTHO05D008496 3.4e-12 75.1 85 51.8
Cfa007227 Carpinus fangiana HOM05D006526 ORTHO05D008496 4.4e-12 74.7 90 48.9
MD09G1010800 Malus domestica HOM05D006526 ORTHO05D008496 4.4e-12 74.7 80 52.5
SGA_v2.0_scaffold47G17596 Striga asiatica HOM05D006526 ORTHO05D008496 4.4e-12 74.7 83 50.6
ClCG05G013530 Citrullus lanatus HOM05D006526 ORTHO05D008496 9.8e-12 73.6 88 48.9
CDE06G2358 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 1.3e-11 73.2 72 50.0
TPR.G14866 Trifolium pratense HOM05D006526 ORTHO05D008496 1.3e-11 73.2 79 53.2
Lj1g0010270 Lotus japonicus HOM05D006526 ORTHO05D008496 1.7e-11 72.8 88 50.0
CDE05G2481 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 2.2e-11 72.4 57 63.2
CDE05G3548 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 2.2e-11 72.4 71 56.3
MBI11_g23476_MAGBIO Magnolia biondii HOM05D006526 ORTHO05D008496 2.8e-11 72.0 57 59.6
ATR0561G126 Amborella trichopoda HOM05D006526 ORTHO05D008496 3.7e-11 71.6 72 50.0
Nitab4.5_0010204g0040 Nicotiana tabacum HOM05D006526 ORTHO05D008496 3.7e-11 71.6 60 60.0
MSTRG.3258 Avicennia marina HOM05D006526 ORTHO05D008496 4.8e-11 71.2 75 53.3
CiPaw.03G055600 Carya illinoinensis HOM05D006526 ORTHO05D008496 8.3e-11 70.5 79 51.9
FvH4_6g53521 Fragaria vesca HOM05D006526 ORTHO05D008496 8.3e-11 70.5 75 52.0
FAN09G0514 Fragaria x ananassa HOM05D002875 ORTHO05D003215 8.3e-11 70.5 75 52.0
Migut.K01466 Erythranthe guttata HOM05D006526 ORTHO05D008496 1.1e-10 70.1 75 50.7
SalBow7G1947 Salvia bowleyana HOM05D006526 ORTHO05D008496 1.1e-10 70.1 70 50.0
Sed0022734 Sechium edule HOM05D006526 ORTHO05D008496 1.1e-10 70.1 76 47.4
CANSAT64G1234 Cannabis sativa HOM05D006526 ORTHO05D008496 1.4e-10 69.7 81 49.4
PSO017G5829 Papaver somniferum HOM05D006526 ORTHO05D008496 1.4e-10 69.7 75 53.3
Psat3g163920 Pisum sativum HOM05D006526 ORTHO05D008496 2.4e-10 68.9 82 48.8
PSO478G2106 Papaver somniferum HOM05D006526 ORTHO05D008496 4.1e-10 68.2 75 50.7
unitig_88.g27695 Utricularia gibba HOM05D006526 ORTHO05D008496 4.1e-10 68.2 76 47.4
Os08g0531300 Oryza sativa ssp. japonica HOM05D006526 ORTHO05D008496 1.6e-09 66.2 74 48.6
ECA238G1207 Erigeron canadensis HOM05D006526 ORTHO05D008496 2.7e-09 65.5 81 45.7
Ca_12965_v3 Cicer arietinum L. HOM05D006526 ORTHO05D008496 4.5e-09 64.7 57 59.6
Lsat_1_v5_gn_2_93080 Lactuca sativa HOM05D006526 ORTHO05D008496 1.0e-08 63.5 84 41.7
HanXRQChr14g0450751 Helianthus annuus HOM05D006526 ORTHO05D008496 1.7e-08 62.8 78 41.0
A06p18730 Brassica napus HOM05D006526 ORTHO05D024464 2.2e-08 62.4 70 51.4
Zm00001eb175140 Zea mays HOM05D006526 ORTHO05D008496 4.2e-07 58.2 69 42.0
SMO137G0097 Selaginella moellendorffii HOM05D006526 ORTHO05D008496 1.2e-06 56.6 76 42.1
AagrBONN_evm.TU.Sc2ySwM_228.1921 Anthoceros agrestis HOM05D006526 ORTHO05D008496 2.7e-06 55.5 71 40.8


User provided reference genes

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