Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 0.0e+00 1093.6 574 100.0
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 3.3e-277 958.0 560 92.3
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 1.4e-275 952.6 576 89.4
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 5.5e-272 940.6 574 88.0
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 3.3e-184 649.0 466 77.3
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 2.4e-171 606.3 635 59.4
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 4.2e-171 605.5 564 63.1
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 8.7e-169 597.8 561 61.7
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 8.1e-167 591.3 564 62.2
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 3.2e-163 579.3 561 60.4
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 4.6e-162 575.5 635 56.9
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 1.0e-161 574.3 629 56.3
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 1.0e-161 574.3 628 56.1
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 1.3e-161 573.9 630 56.0
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 1.1e-160 570.9 620 56.9
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 1.1e-160 570.9 620 58.2
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 2.5e-160 569.7 620 56.6
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 3.7e-159 565.8 626 56.2
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 3.9e-153 545.8 607 57.5
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 3.3e-152 542.7 626 55.0
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 9.1e-150 534.6 585 58.3
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 1.2e-149 534.3 630 52.7
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 2.9e-132 476.5 631 51.2
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 2.4e-126 456.8 620 47.7
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 1.6e-122 444.1 628 47.3
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 1.8e-121 440.7 638 44.7
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 4.0e-121 439.5 631 46.4
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 6.8e-121 438.7 632 45.1
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 1.5e-120 437.6 633 44.4
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 2.0e-120 437.2 626 45.5
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 2.0e-120 437.2 626 45.5
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 3.4e-120 436.4 632 44.8
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 3.4e-120 436.4 626 47.0
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 5.7e-120 435.6 609 46.8
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 5.7e-120 435.6 632 44.0
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 9.8e-120 434.9 624 46.2
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 1.7e-119 434.1 640 44.7
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 2.8e-119 433.3 624 46.2
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 6.3e-119 432.2 626 44.7
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.4e-118 431.0 624 46.0
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 3.1e-118 429.9 633 44.4
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 5.4e-118 429.1 631 45.5
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.6e-117 427.6 624 45.4
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 4.5e-117 426.0 642 42.7
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 2.3e-116 423.7 628 45.2
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 2.9e-116 423.3 542 50.7
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 8.6e-116 421.8 615 43.7
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 8.6e-116 421.8 627 45.3
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 2.5e-115 420.2 631 44.1
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 9.5e-115 418.3 641 44.6
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 1.8e-113 414.1 626 43.8
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 2.3e-113 413.7 643 42.1
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 4.0e-113 412.9 622 44.7
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 8.8e-113 411.8 626 44.6
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 8.8e-113 411.8 643 41.7
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 7.5e-112 408.7 635 43.1
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 1.8e-110 404.1 622 44.2
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 3.1e-110 403.3 649 41.8
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 7.0e-110 402.1 577 45.9
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 3.5e-109 399.8 655 42.6
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 3.5e-109 399.8 653 42.0
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 7.8e-109 398.7 639 42.4
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 1.7e-108 397.5 634 42.4
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 1.7e-108 397.5 637 41.0
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 1.7e-108 397.5 625 43.8
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.0e-108 396.0 645 41.6
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.9e-107 394.0 645 40.9
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.5e-107 393.7 645 41.2
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.5e-107 393.7 645 41.2
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 5.6e-107 392.5 610 42.0
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 1.6e-106 391.0 628 42.0
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 1.6e-106 391.0 645 41.2
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.6e-106 391.0 645 40.9
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.8e-106 390.2 645 40.9
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 4.7e-106 389.4 623 43.0
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 4.7e-106 389.4 623 42.7
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 4.7e-106 389.4 659 40.7
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.2e-105 386.0 645 41.1
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 6.8e-105 385.6 654 40.7
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 5.7e-104 382.5 633 41.7
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 2.9e-103 380.2 626 40.7
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 6.4e-103 379.0 640 40.8
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 1.1e-102 378.3 645 39.8
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 9.2e-102 375.2 626 41.4
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 2.0e-101 374.0 648 40.4
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 3.5e-101 373.2 624 41.7
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 5.9e-101 372.5 628 42.0
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 1.7e-100 370.9 634 40.9
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 2.3e-100 370.5 622 40.5
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 2.3e-100 370.5 621 40.6
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 3.9e-100 369.8 634 39.7
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 6.6e-100 369.0 628 41.7
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 8.0e-98 362.1 642 39.7
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 6.8e-97 359.0 557 42.5
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 1.3e-95 354.8 620 40.3
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 1.7e-95 354.4 642 39.3
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 8.3e-95 352.1 613 39.8
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 4.1e-94 349.7 612 39.9
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 3.5e-93 346.7 631 39.5
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 1.9e-91 340.9 568 41.7
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 4.3e-91 339.7 581 41.3
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 1.4e-89 334.7 638 36.4
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 6.8e-89 332.4 570 41.6
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 1.2e-88 331.6 623 37.9
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 1.2e-88 331.6 626 37.5
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 6.4e-87 325.9 637 37.4
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 6.4e-87 325.9 628 37.6
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 1.9e-86 324.3 631 36.8
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 7.1e-86 322.4 629 36.1
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 1.6e-85 321.2 594 38.0
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 5.1e-84 316.2 591 38.1
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 1.4e-78 298.1 666 35.7
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 3.2e-78 297.0 656 34.5
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 2.7e-77 293.9 563 38.7
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 5.1e-76 289.7 660 34.2
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 2.5e-75 287.3 150 98.7
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 5.6e-75 286.2 331 55.0
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 1.2e-74 285.0 494 39.9
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 2.8e-74 283.9 582 35.9
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 4.4e-72 276.6 413 44.8
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 6.4e-71 272.7 412 44.7
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 4.6e-69 266.5 418 41.9
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 2.3e-68 264.2 358 45.8
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 6.2e-66 256.1 369 42.8
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 1.5e-64 251.5 430 41.9
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 2.0e-64 251.1 547 33.8
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 1.2e-61 241.9 542 33.6
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.8e-58 229.9 541 33.1
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 8.1e-58 229.2 540 32.8
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 1.1e-57 228.8 413 40.0
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 9.3e-54 215.7 542 31.2
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.8e-52 211.5 342 43.6
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 1.3e-50 205.3 654 29.4
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 6.0e-45 186.4 333 39.9
BolC5t33660H Brassica oleracea HOM05D001997 ORTHO05D004620 1.8e-44 184.9 351 40.5
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.8e-39 167.2 477 28.7
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 7.2e-30 136.3 84 86.9
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 8.8e-28 129.4 696 24.1
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 6.3e-26 123.2 178 48.3
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 4.5e-24 117.1 105 61.0
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 2.9e-23 114.4 69 87.0
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 1.4e-22 112.1 88 67.0
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 4.7e-21 107.1 98 59.2
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 1.0e-20 105.9 88 64.8
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 1.4e-20 105.5 61 85.2
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 8.8e-20 102.8 150 40.7
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 1.1e-19 102.4 130 46.9
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 1.1e-19 102.4 406 25.9
BcaB01g03396 Brassica carinata HOM05D001623 ORTHO05D001473 2.0e-19 101.7 231 34.6
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 5.7e-19 100.1 112 49.1
BcaC01g05246 Brassica carinata HOM05D001997 ORTHO05D004620 1.3e-18 99.0 84 70.2
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 2.2e-18 98.2 183 35.5
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 2.8e-18 97.8 300 32.3
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 6.3e-18 96.7 104 51.9
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 5.3e-17 93.6 108 52.8
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 1.9e-14 85.1 117 52.1
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 2.5e-14 84.7 142 41.5
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 2.5e-14 84.7 86 52.3
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 1.2e-13 82.4 93 48.4
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 1.2e-13 82.4 88 50.0
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 1.6e-13 82.0 84 51.2
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 6.1e-13 80.1 111 45.9
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 2.0e-11 75.1 239 32.6
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 1.7e-10 72.0 64 54.7
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 2.2e-10 71.6 62 62.9
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 2.2e-10 71.6 62 62.9
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 6.3e-10 70.1 83 44.6
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 8.2e-10 69.7 62 61.3
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 1.1e-09 69.3 70 52.9
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 1.3e-07 62.4 152 37.5


User provided reference genes

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