Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g39334 Brassica carinata HOM05D011481 ORTHO05D009878 1.7e-67 259.2 130 100.0
C08p23500 Brassica napus HOM05D011481 ORTHO05D009878 1.7e-67 259.2 130 100.0
BolC8t49978H Brassica oleracea HOM05D011481 ORTHO05D009878 1.7e-67 259.2 130 100.0
A06p19190 Brassica napus HOM05D011481 ORTHO05D009878 8.8e-61 236.9 130 93.8
BraA06t25002Z Brassica rapa HOM05D011481 ORTHO05D009878 8.8e-61 236.9 130 93.8
BcaB01g00807 Brassica carinata HOM05D011481 ORTHO05D009878 1.2e-57 226.5 130 91.5
Thhalv10011023m.g Eutrema salsugineum HOM05D011481 ORTHO05D009878 1.2e-36 156.8 120 74.2
AL5G27920 Arabidopsis lyrata HOM05D011481 ORTHO05D009878 5.1e-32 141.4 122 69.7
Sp5g13540 Schrenkiella parvula HOM05D011481 ORTHO05D009878 1.1e-29 133.7 137 62.8
THA.LOC104821506 Tarenaya hassleriana HOM05D011481 ORTHO05D009878 1.3e-27 126.7 149 51.7
Carub.0005s1467 Capsella rubella HOM05D011481 ORTHO05D009878 2.2e-27 125.9 114 62.3
AT3G48490 Arabidopsis thaliana HOM05D011481 ORTHO05D009878 8.3e-27 124.0 116 64.7
Aa31LG4G17080 Aethionema arabicum HOM05D011481 ORTHO05D009878 6.0e-25 117.9 129 58.9
TWI14G0571 Tripterygium wilfordii HOM05D008121 ORTHO05D009878 3.1e-13 79.0 156 38.5
CsaV3_1G009340 Cucumis sativus L. HOM05D008121 ORTHO05D009878 1.7e-11 73.2 157 36.3
CiPaw.12G036100 Carya illinoinensis HOM05D008121 ORTHO05D009878 2.9e-11 72.4 53 62.3
CiPaw.11G011700 Carya illinoinensis HOM05D008121 ORTHO05D009878 8.4e-11 70.9 133 38.3
Haze_07274 Corylus avellana HOM05D008121 ORTHO05D009878 1.4e-10 70.1 143 35.0
EL10Ac7g18085 Beta vulgaris HOM05D008121 ORTHO05D009878 4.2e-10 68.6 113 36.3
Potri.015G091100 Populus trichocarpa HOM05D008121 ORTHO05D009878 7.1e-10 67.8 141 35.5
Manes.14G055100 Manihot esculenta HOM05D008121 ORTHO05D009878 1.2e-09 67.0 74 52.7
CSS0015443 Camellia sinensis var. sinensis HOM05D008121 ORTHO05D009878 2.7e-09 65.9 140 36.4
Hma1.2p1_0014F.1_g009910 Hydrangea macrophylla HOM05D008121 ORTHO05D009878 3.5e-09 65.5 143 35.7
Atru.chr9.1017 Acer truncatum HOM05D008121 ORTHO05D009878 1.0e-08 63.9 128 36.7
MELO3C002337.2 Cucumis melo HOM05D008121 ORTHO05D009878 1.0e-08 63.9 153 34.6
Eucgr.K02754 Eucalyptus grandis HOM05D011481 ORTHO05D009878 1.0e-08 63.9 62 58.1
ClCG03G003530 Citrullus lanatus HOM05D008121 ORTHO05D009878 1.3e-08 63.5 129 34.9
PGR044G1447 Punica granatum HOM05D011481 ORTHO05D009878 1.3e-08 63.5 131 37.4
Cpa.g.sc4.77 Carica papaya HOM05D008121 ORTHO05D009878 1.7e-08 63.2 45 66.7
Duzib084G1233 Durio zibethinus HOM05D008121 ORTHO05D009878 1.7e-08 63.2 116 37.9
vmacro19236 Vaccinium macrocarpon HOM05D008121 ORTHO05D009878 3.0e-08 62.4 113 40.7
Phvul.003G208400 Phaseolus vulgaris HOM05D008121 ORTHO05D009878 5.1e-08 61.6 138 34.8
Duzib205G1258 Durio zibethinus HOM05D008121 ORTHO05D009878 6.6e-08 61.2 51 64.7
Gorai.006G270600 Gossypium raimondii HOM05D008121 ORTHO05D009878 6.6e-08 61.2 89 44.9
Sabra15G0113100 Salix brachista HOM05D000290 ORTHO05D004630 6.6e-08 61.2 142 34.5
Gohir.D09G246100 Gossypium hirsutum HOM05D008121 ORTHO05D009878 8.7e-08 60.8 89 44.9
MSTRG.22918 Avicennia marina HOM05D008121 ORTHO05D009878 1.5e-07 60.1 120 39.2
Actinidia25609 Actinidia chinensis HOM05D008121 ORTHO05D009878 2.5e-07 59.3 124 36.3
DCAR_026211 Daucus carota HOM05D008121 ORTHO05D009878 2.5e-07 59.3 144 36.8
Migut.I00480 Erythranthe guttata HOM05D008121 ORTHO05D009878 2.5e-07 59.3 127 40.2
Medtr4g104040 Medicago truncatula HOM05D008121 ORTHO05D009878 5.6e-07 58.2 108 41.7
RcHm_v2.0_Chr7g0190901 Rosa chinensis HOM05D008121 ORTHO05D009878 5.6e-07 58.2 43 65.1
Thecc.03G123300 Theobroma cacao HOM05D008121 ORTHO05D009878 5.6e-07 58.2 55 58.2
Ciclev10023121m.g Citrus clementina HOM05D008121 ORTHO05D009878 9.6e-07 57.4 54 57.4
Ciclev10024026m.g Citrus clementina HOM05D008121 ORTHO05D009878 9.6e-07 57.4 54 57.4
Dinv38465 Davidia involucrata HOM05D008121 ORTHO05D009878 9.6e-07 57.4 127 37.0
Psat4g064880 Pisum sativum HOM05D008121 ORTHO05D009878 9.6e-07 57.4 104 41.3
VMungo1215G2720 Vigna mungo HOM05D000290 ORTHO05D004630 9.6e-07 57.4 133 32.3
Cc04_g10260 Coffea canephora HOM05D008121 ORTHO05D009878 1.3e-06 57.0 137 38.0
Glyma.17G127300 Glycine max HOM05D008121 ORTHO05D009878 1.3e-06 57.0 117 35.0
arahy.Tifrunner.gnm1.ann1.DV5N5R Arachis hypogaea HOM05D008121 ORTHO05D009878 1.6e-06 56.6 128 35.9
Cfa018889 Carpinus fangiana HOM05D008121 ORTHO05D009878 1.6e-06 56.6 165 32.1
AUR62001288 Chenopodium quinoa HOM05D008121 ORTHO05D009878 1.6e-06 56.6 126 34.9
COL.COLO4_03517 Corchorus olitorius HOM05D008121 ORTHO05D009878 1.6e-06 56.6 127 37.8
Gohir.A09G245200 Gossypium hirsutum HOM05D008121 ORTHO05D009878 2.1e-06 56.2 89 43.8
Lalb_Chr13g0297421 Lupinus albus HOM05D008121 ORTHO05D009878 2.1e-06 56.2 90 41.1
HanXRQChr09g0272891 Helianthus annuus HOM05D008121 ORTHO05D009878 4.8e-06 55.1 135 35.6
MD06G1149100 Malus domestica HOM05D008121 ORTHO05D009878 4.8e-06 55.1 68 47.1
Dinv02922 Davidia involucrata HOM05D008121 ORTHO05D009878 6.2e-06 54.7 127 36.2
Glyma.05G045100 Glycine max HOM05D008121 ORTHO05D009878 8.1e-06 54.3 140 31.4
Solyc03g110980.4 Solanum lycopersicum HOM05D008121 ORTHO05D009878 8.1e-06 54.3 145 33.8


User provided reference genes

Program Settings